Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005714.1 Hibiscus syriacus cultivar Beakdansim tig00013355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96116

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2497--2529
17
1.9
17
100
0
66
27
0
0
72
0.85
3385--3418
16
2.1
16
88
0
50
41
11
23
23
1.87
16752--16782
14
2.2
14
94
0
53
38
12
9
38
1.77
39928--39965
16
2.4
16
82
4
51
44
0
0
55
0.99
40867--40913
24
2.0
24
86
0
67
38
12
4
44
1.62
42730--43070
171
2.0
171
94
0
592
36
23
12
27
1.91
44146--44285
29
4.9
29
78
6
124
44
11
23
20
1.84
50867--50901
2
17.5
2
100
0
70
51
0
0
48
1.00
50899--50981
4
20.8
4
100
0
166
50
0
24
25
1.49
53065--53105
19
2.2
19
86
8
57
12
17
0
70
1.16
53072--53110
20
1.9
19
90
10
60
12
17
0
69
1.19
53072--53105
9
3.6
9
88
11
50
11
20
0
67
1.21
53457--53513
30
1.9
30
92
0
96
31
22
22
22
1.98
53906--54030
47
2.8
45
84
8
155
30
20
8
40
1.83
70574--70622
24
2.0
24
84
0
62
65
2
12
20
1.35
70920--70958
9
4.3
9
83
9
53
64
0
10
25
1.25
70920--70958
17
2.2
19
86
9
55
64
0
10
25
1.25
71526--71630
37
2.8
37
85
0
147
31
13
15
40
1.85
72381--73643
106
12.0
106
89
3
1804
22
17
24
34
1.96
75240--75310
8
8.4
8
75
18
56
1
12
4
81
0.90
75240--75294
28
2.0
28
85
7
76
1
14
3
80
0.94
75239--75300
29
2.2
28
80
8
72
1
16
3
79
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79678--79734
19
2.8
22
75
20
61
66
0
3
29
1.08
79704--79777
28
2.7
27
76
19
73
62
1
4
32
1.22
80495--80596
37
2.8
37
89
0
141
30
14
14
40
1.86
82252--82362
35
3.2
35
81
2
125
34
2
36
27
1.71
86335--86379
7
7.2
6
83
16
56
0
20
0
80
0.72
86340--86389
20
2.3
22
83
13
68
0
18
4
78
0.91
86747--86846
35
2.8
34
76
7
92
33
4
36
27
1.75

Tables:   1

The End!