genome.fa.s5715.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005715.1 Hibiscus syriacus cultivar Beakdansim tig00013365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47840

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107--415	55	5.7	55	84	4	380	33	12	18	34	1.89
124--412	160	1.8	161	85	3	413	32	12	19	35	1.90
6197--6257	27	2.3	27	97	0	113	31	11	13	44	1.79
6555--6605	19	2.5	22	90	9	81	39	15	15	29	1.89
6963--7276	55	5.7	55	90	1	472	34	11	18	35	1.87
7678--7728	25	1.9	27	84	11	70	39	3	7	49	1.51
8148--8178	8	3.8	8	91	8	53	0	22	0	77	0.77
8134--8177	9	4.9	9	81	18	56	2	22	0	75	0.92
8134--8178	17	2.5	18	89	7	65	2	24	0	73	0.95
17906--18004	25	4.0	25	92	3	157	29	15	20	35	1.93
18315--18545	43	5.2	43	68	12	151	23	19	30	26	1.98
18331--18543	87	2.3	92	89	5	319	24	18	30	26	1.98
18377--18533	46	3.6	45	72	11	139	23	19	30	26	1.98
18423--18669	135	1.9	134	85	8	353	25	19	28	25	1.99
29734--29760	14	1.9	14	100	0	54	81	0	0	18	0.69
33232--33330	25	4.0	25	97	1	173	30	16	20	33	1.94
41732--41858	46	2.7	47	79	4	141	32	10	11	46	1.73
41777--41913	46	3.0	46	75	13	129	32	10	10	45	1.74
45641--45701	17	3.4	17	71	18	52	78	1	6	13	1.01
45646--45679	10	3.5	10	92	4	52	82	0	11	5	0.83
45673--45807	46	2.8	49	76	13	138	66	2	2	27	1.20
45728--45827	44	2.3	46	84	10	129	61	3	2	34	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45680--45827	48	3.2	47	78	14	141	64	3	2	30	1.21
46374--46447	36	2.0	37	97	2	141	31	16	13	39	1.87
47016--47840	84	10.1	83	74	7	706	25	20	23	30	1.98
47037--47840	245	3.3	246	84	5	1032	25	20	23	30	1.98
47055--47644	164	3.6	166	77	7	424	24	20	23	31	1.98

Tables:   1

The End!