Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005716.1 Hibiscus syriacus cultivar Beakdansim tig00013366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63063
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Found at i:2155 original size:30 final size:30
Alignment explanation
Indices: 2120--2183 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
2110 CAAATCAATG
2120 CTTTAGGCAATTAGTAGTCTTTTTTTCTTT
1 CTTTAGGCAATTAGTAGTCTTTTTTTCTTT
2150 CTTTAGGCAATTAGTAGTCTTTTTTTCTTT
1 CTTTAGGCAATTAGTAGTCTTTTTTTCTTT
2180 CTTT
1 CTTT
2184 CTTTTTGCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.16, C:0.14, G:0.12, T:0.58
Consensus pattern (30 bp):
CTTTAGGCAATTAGTAGTCTTTTTTTCTTT
Found at i:8927 original size:6 final size:6
Alignment explanation
Indices: 8916--8944 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8906 GTTGTTTCCA
8916 GAAAAG GAAAAG GAAAAG GAAAAG GAAAA
1 GAAAAG GAAAAG GAAAAG GAAAAG GAAAA
8945 AAAAAGAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (6 bp):
GAAAAG
Found at i:18754 original size:2 final size:2
Alignment explanation
Indices: 18749--18849 Score: 71
Period size: 2 Copynumber: 55.5 Consensus size: 2
18739 ATATAAAATA
* *
18749 AT AT AT AT AT AT AT A- AT -T A- AT AT A- AA AT AT AT AA ACT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
* * *
18788 -T AT AT AT GT A- AT -T AT -T AT A- AA AT AT AT A- AA AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18823 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
18850 ATAATCGGGG
Statistics
Matches: 80, Mismatches: 7, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
1 11 0.14
2 68 0.85
3 1 0.01
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (2 bp):
AT
Found at i:18759 original size:34 final size:34
Alignment explanation
Indices: 18720--18831 Score: 152
Period size: 34 Copynumber: 3.2 Consensus size: 34
18710 GGGTTTGTAT
*
18720 TATATAATTAATATAAAAAATATAAAATAATATATATA
1 TATATAATTAATAT--AAAATATATAA-AATAT-TATA
*
18758 TATATAATTAATATAAAATATATAAACTATTATA
1 TATATAATTAATATAAAATATATAAAATATTATA
* *
18792 TATGTAATTATTATAAAATATATAAAATATTATA
1 TATATAATTAATATAAAATATATAAAATATTATA
18826 TATATA
1 TATATA
18832 TATATATATA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
34 40 0.59
35 4 0.06
36 10 0.15
38 14 0.21
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (34 bp):
TATATAATTAATATAAAATATATAAAATATTATA
Found at i:18847 original size:34 final size:35
Alignment explanation
Indices: 18730--18850 Score: 140
Period size: 34 Copynumber: 3.4 Consensus size: 35
18720 TATATAATTA
* *
18730 ATATAAAAAATATAAAATAATATATATATATATAATT
1 ATATAAAATATATAAAATATTATATATATATAT-A-T
* *
18767 AATATAAAATATATAAACTATTATATATGTA-AT-T
1 -ATATAAAATATATAAAATATTATATATATATATAT
18801 ATTATAAAATATATAAAATATTATATATATATATAT
1 A-TATAAAATATATAAAATATTATATATATATATAT
*
18837 ATAT-ATATATATAA
1 ATATAAAATATATAA
18851 TAATCGGGGC
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
33 1 0.01
34 37 0.51
35 5 0.07
36 2 0.03
37 2 0.03
38 26 0.36
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (35 bp):
ATATAAAATATATAAAATATTATATATATATATAT
Found at i:19109 original size:8 final size:8
Alignment explanation
Indices: 19096--19122 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
19086 TAAAAGATTG
19096 AAATTTGA
1 AAATTTGA
19104 AAATTTGA
1 AAATTTGA
19112 AAATTTGA
1 AAATTTGA
19120 AAA
1 AAA
19123 ACTAAAAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (8 bp):
AAATTTGA
Found at i:19861 original size:156 final size:157
Alignment explanation
Indices: 19572--19905 Score: 553
Period size: 156 Copynumber: 2.1 Consensus size: 157
19562 GAACCTCGAG
*
19572 GATAAATATTCTAGTATTTCTTCCATAGAGAAAAATCCCGAGTTGTCTTCTCAACTCACTAAGGA
1 GATAAATATTCTAGTATTTCTTCCATAGAGAAAAATCCCGAGTTGTCATCTCAACTCACTAAGGA
* ** * *
19637 GCTTGAGGATATATATTCAAGTATTTCTGGTTGGAAACCTTCCCTTGAGAAAAATCATGATTTAT
66 GCTTGAGGATATATACTCAACCATTTCTGGTTGGAAACCTTCCCTTGAGAAAAATCATGACTCAT
*
19702 CTTCTCCGCTTACT-AAAAAAATTGAA
131 CTTCTCAGCTTACTAAAAAAAATTGAA
* *
19728 GATAAATATTATAGTATTTCTTCCGTAGAGAAAAATCCCGAGTTGTCATCTCAACTCACTAAGGA
1 GATAAATATTCTAGTATTTCTTCCATAGAGAAAAATCCCGAGTTGTCATCTCAACTCACTAAGGA
* * *
19793 GCTTGAGGATATATACTCTACCATTTCTGGTTGGAAGCCTTCCCTTGAGAAAAATCATGACTCGT
66 GCTTGAGGATATATACTCAACCATTTCTGGTTGGAAACCTTCCCTTGAGAAAAATCATGACTCAT
19858 CTTCTCAGCTTACTAAAAAAAATTGAA
131 CTTCTCAGCTTACTAAAAAAAATTGAA
19885 GATAAATATTCTAGTATTTCT
1 GATAAATATTCTAGTATTTCT
19906 CGTTGGAGAT
Statistics
Matches: 164, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
156 132 0.80
157 32 0.20
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (157 bp):
GATAAATATTCTAGTATTTCTTCCATAGAGAAAAATCCCGAGTTGTCATCTCAACTCACTAAGGA
GCTTGAGGATATATACTCAACCATTTCTGGTTGGAAACCTTCCCTTGAGAAAAATCATGACTCAT
CTTCTCAGCTTACTAAAAAAAATTGAA
Found at i:22499 original size:30 final size:30
Alignment explanation
Indices: 22457--22516 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
22447 ATGACTTTTA
22457 ATTTAAACAAATGTTAGGGTATAAACATTT
1 ATTTAAACAAATGTTAGGGTATAAACATTT
*
22487 ATTT-AACTAAATGTTAGGGTATAAATATTT
1 ATTTAAAC-AAATGTTAGGGTATAAACATTT
22517 TATTATGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 3 0.11
30 25 0.89
ACGTcount: A:0.42, C:0.05, G:0.13, T:0.40
Consensus pattern (30 bp):
ATTTAAACAAATGTTAGGGTATAAACATTT
Found at i:23314 original size:21 final size:21
Alignment explanation
Indices: 23272--23314 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
23262 TTTCTGGGCT
*
23272 AGGGGAATCGATACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
23293 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
23314 A
1 A
23315 ACGAATATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.28, G:0.23, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:23367 original size:20 final size:20
Alignment explanation
Indices: 23342--23379 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23332 GAACGCTAGA
*
23342 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
23362 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
23380 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:24026 original size:23 final size:22
Alignment explanation
Indices: 23993--24054 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 22
23983 ATTATTATTT
23993 GGCACTACGGTGCAATTCTACGC
1 GGCACT-CGGTGCAATTCTACGC
* *
24016 GGCACTCCGGTGCAATTTTACGT
1 GGCACT-CGGTGCAATTCTACGC
*
24039 GGCACTAGGTGCAATT
1 GGCACTCGGTGCAATT
24055 ATATGAGCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 9 0.26
23 26 0.74
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (22 bp):
GGCACTCGGTGCAATTCTACGC
Found at i:30170 original size:20 final size:20
Alignment explanation
Indices: 30145--30182 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
30135 GAACGCTAGA
*
30145 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
30165 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
30183 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:30992 original size:103 final size:103
Alignment explanation
Indices: 30664--30984 Score: 597
Period size: 103 Copynumber: 3.1 Consensus size: 103
30654 GTAGAGGATC
30664 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
30729 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
* * * *
30767 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACACGTGTGAGGTCTAGTGAAACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
30832 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
30870 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
30935 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
30973 TATGTGGTCCTT
1 TATGTGGTCCTT
30985 ATGGACATTA
Statistics
Matches: 208, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 208 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:31034 original size:23 final size:23
Alignment explanation
Indices: 31001--31063 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
30991 ATTATTATTT
31001 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* * *
31024 GGCACTCCGGTGCAATTTTACGT
1 GGCACTACGGTGCAATTCTACGC
31047 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
31064 ATATGAGCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 34 0.97
24 1 0.03
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:32056 original size:25 final size:24
Alignment explanation
Indices: 32004--32049 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 24
31994 TGGTTAAATA
32004 TTAAATATAATCATATAGTTTGAAT
1 TTAAATATAAT-ATATAGTTTGAAT
32029 TTAAATTATAAT-TAT-GTTTGA
1 TTAAA-TATAATATATAGTTTGA
32050 TACTTTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 5 0.25
26 6 0.30
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (24 bp):
TTAAATATAATATATAGTTTGAAT
Found at i:33184 original size:84 final size:84
Alignment explanation
Indices: 33038--33428 Score: 444
Period size: 84 Copynumber: 4.8 Consensus size: 84
33028 TTTAGTGAGA
** * * * * *
33038 AAAAATCCTGAGTTAACTTCTCAATTTTCTAAGGAGCTCGAAGATAAATATTTTAATTTTGCTAA
1 AAAAATCCTGAGTTGTCTTCTCAACTTGCTAAGGAGCTTGAAGATAAATATTCTAATGTTGCTAA
* *
33103 TTGGAGATATTAT-ACAGAC
66 TTGGAGATCTTATGTC-GAC
* *
33122 AGAAGTCCTGAGTTGTCTTCTCAACTTGCTAAGGAGCTTGAAGATAAATATTCTAATGTTGCTAA
1 AAAAATCCTGAGTTGTCTTCTCAACTTGCTAAGGAGCTTGAAGATAAATATTCTAATGTTGCTAA
* *
33187 TTGGAGATCTTCTGTCGAT
66 TTGGAGATCTTATGTCGAC
* *
33206 AAAAAT-CTCGAGTTGTCTTCTCAACTTGTTAAGGAGCTTGAAGATAAATATTCTAACGTTGCTA
1 AAAAATCCT-GAGTTGTCTTCTCAACTTGCTAAGGAGCTTGAAGATAAATATTCTAATGTTGCTA
*
33270 ATTGGAGATCTTATGTCGAT
65 ATTGGAGATCTTATGTCGAC
* * * * *
33290 AAAAATCTTGAGTTG-----T---CTTGCTAAGGAGCTCGAAAATAAATATCCTAATGTTGTTAA
1 AAAAATCCTGAGTTGTCTTCTCAACTTGCTAAGGAGCTTGAAGATAAATATTCTAATGTTGCTAA
* * *
33347 TTGAAGATCTCATGCCGAC
66 TTGGAGATCTTATGTCGAC
* * *
33366 -AAAATCCCGAGTTGTCTTCTCAACTTGCTAAGAAGCTTGAAGATAAATATTCTAGTGTTGCTA
1 AAAAATCCTGAGTTGTCTTCTCAACTTGCTAAGGAGCTTGAAGATAAATATTCTAATGTTGCTA
33429 TTATATTGAA
Statistics
Matches: 259, Mismatches: 37, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
75 12 0.05
76 50 0.19
79 1 0.00
80 1 0.00
83 36 0.14
84 157 0.61
85 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (84 bp):
AAAAATCCTGAGTTGTCTTCTCAACTTGCTAAGGAGCTTGAAGATAAATATTCTAATGTTGCTAA
TTGGAGATCTTATGTCGAC
Found at i:34990 original size:22 final size:21
Alignment explanation
Indices: 34956--34996 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
34946 ATAATTATTT
34956 AAAAAATTAAATAAAAATACC
1 AAAAAATTAAATAAAAATACC
*
34977 AAAAATATTTAATAAAAATA
1 AAAAA-ATTAAATAAAAATA
34997 ATTTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAAAATTAAATAAAAATACC
Found at i:35867 original size:5 final size:5
Alignment explanation
Indices: 35857--35884 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
35847 AGTATCGGCA
35857 TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTA
35885 ATCGTTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:38495 original size:20 final size:19
Alignment explanation
Indices: 38466--38503 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
38456 CTTTTGATAA
38466 GTTCGATTCAATTTGATTCG
1 GTTCGATTCAA-TTGATTCG
*
38486 GTTCGGTTCAATTGATTC
1 GTTCGATTCAATTGATTC
38504 AGATTCTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.18, C:0.16, G:0.21, T:0.45
Consensus pattern (19 bp):
GTTCGATTCAATTGATTCG
Found at i:39072 original size:16 final size:17
Alignment explanation
Indices: 39047--39081 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
39037 AAATCATAAA
*
39047 TATTAGATATTA-ATTT
1 TATTAAATATTATATTT
39063 TATTAAATATTATATTT
1 TATTAAATATTATATTT
39080 TA
1 TA
39082 AAACAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TATTAAATATTATATTT
Found at i:46235 original size:27 final size:27
Alignment explanation
Indices: 46204--46264 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
46194 AACAGGGCTA
*
46204 AATGATTCAGCATAAAAGTACATTCTG
1 AATGATTCAGCACAAAAGTACATTCTG
*
46231 AATGATTCAGTACAAAAGTACATTCTG
1 AATGATTCAGCACAAAAGTACATTCTG
46258 AATGATT
1 AATGATT
46265 TAGAGTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (27 bp):
AATGATTCAGCACAAAAGTACATTCTG
Found at i:48562 original size:18 final size:18
Alignment explanation
Indices: 48538--48583 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
48528 TTTATTATGT
48538 TTATAATATTTGTTATAC
1 TTATAATATTTGTTATAC
*
48556 TTCTAAT-TATTGTTATAC
1 TTATAATAT-TTGTTATAC
48574 TTATAATATT
1 TTATAATATT
48584 AATTAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 1 0.04
18 22 0.92
19 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.57
Consensus pattern (18 bp):
TTATAATATTTGTTATAC
Found at i:60128 original size:28 final size:26
Alignment explanation
Indices: 60071--60134 Score: 74
Period size: 28 Copynumber: 2.4 Consensus size: 26
60061 TAAATGACTA
* *
60071 ATTTATTTAATTTTTAAAATCATATT
1 ATTTATTTAATTTATAAAATCATAAT
* *
60097 ATTTATTTATGATTTATAATATTATAAT
1 ATTTATTTA--ATTTATAAAATCATAAT
60125 ATTTATTTAA
1 ATTTATTTAA
60135 AATTAAATAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 10 0.31
28 22 0.69
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (26 bp):
ATTTATTTAATTTATAAAATCATAAT
Found at i:60267 original size:24 final size:22
Alignment explanation
Indices: 60239--60311 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 22
60229 TTTAGAAATT
60239 ATATAATTTTTAAAAATATTATA
1 ATATAATTTTTAAAAATATT-TA
*
60262 ATTATAAATTTTT-AGAATGATTTA
1 A-TAT-AATTTTTAAAAAT-ATTTA
*
60286 ATATAAATTTTATAAAATATATTA
1 ATATAATTTTTA-AAAATAT-TTA
60310 AT
1 AT
60312 TGTTTAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
22 6 0.15
23 6 0.15
24 19 0.46
25 10 0.24
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (22 bp):
ATATAATTTTTAAAAATATTTA
Done.