genome.fa.s5718.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005718.1 Hibiscus syriacus cultivar Beakdansim tig00013370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146329

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2149--2184	18	1.9	19	88	5	56	47	2	2	47	1.31
20762--20840	38	2.1	38	95	0	140	40	13	16	29	1.87
21306--21345	17	2.4	17	87	8	55	42	2	2	52	1.28
21633--21657	12	2.1	12	100	0	50	40	8	36	16	1.77
33922--33966	21	2.1	21	83	0	54	31	31	24	13	1.93
35560--35619	23	2.6	23	91	0	93	20	26	26	26	1.99
49509--49543	15	2.3	15	95	0	61	57	0	0	42	0.99
49630--49683	27	2.0	27	92	0	90	42	31	9	16	1.80
49761--49811	26	1.9	27	96	4	95	43	17	13	25	1.86
52585--52993	20	20.2	20	79	12	374	41	22	19	16	1.90
52587--52940	101	3.5	102	88	5	472	40	23	19	16	1.90
53064--53150	6	14.5	6	100	0	174	33	50	16	0	1.45
53651--53689	6	6.5	6	100	0	78	0	15	51	33	1.44
53785--54272	40	12.1	40	87	8	624	15	19	23	41	1.89
53785--54272	20	24.2	20	80	13	542	15	19	23	41	1.89
56786--56844	23	2.6	23	88	0	82	40	16	5	37	1.71
57262--57324	23	2.7	23	92	0	99	38	20	4	36	1.74
57738--57800	23	2.7	23	90	0	90	38	19	4	38	1.73
58211--58273	23	2.7	23	90	0	90	38	19	4	38	1.73
58691--58746	23	2.4	23	90	0	94	37	21	5	35	1.76
56377--58987	481	5.5	481	96	1	4772	40	10	7	41	1.68
58786--59723	228	4.1	229	96	0	1702	39	8	7	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62383--62445	7	9.0	7	98	0	117	15	0	55	28	1.41
63268--63294	14	1.9	14	100	0	54	59	0	0	40	0.98
67100--67258	81	2.0	81	98	0	309	38	9	3	47	1.54
70638--70669	15	2.3	15	89	10	50	40	0	6	53	1.26
79035--79095	3	21.0	3	75	12	56	26	3	3	67	1.22
80881--80919	20	1.9	21	89	5	62	30	0	20	48	1.50
81098--81131	17	1.9	18	88	5	52	38	2	2	55	1.30
86794--86897	36	3.0	35	79	9	115	32	20	12	34	1.90
87149--87243	28	3.5	27	83	9	113	28	9	14	47	1.76
87144--87258	54	2.1	55	79	9	128	29	8	13	47	1.73
87339--87402	27	2.3	27	89	7	94	28	6	18	46	1.73
87390--87516	37	3.6	37	70	20	119	30	12	12	44	1.80
87364--87588	67	3.4	65	86	5	276	29	11	12	45	1.78
87666--87783	63	1.9	62	84	8	159	27	17	11	42	1.85
87920--88033	46	2.6	45	85	4	151	24	30	21	23	1.99
87864--88198	43	7.9	43	74	11	219	22	31	20	26	1.98
88027--88205	83	2.2	83	90	6	308	20	31	19	27	1.97
88355--88415	3	21.0	3	75	12	56	26	3	3	67	1.22
90425--90458	17	1.9	18	88	5	52	38	2	2	55	1.30
91883--91959	31	2.5	31	82	2	100	28	31	25	14	1.95
92829--92866	7	5.4	7	100	0	76	26	28	28	15	1.96
92863--92903	5	7.8	5	84	10	55	4	21	53	19	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92856--92904	22	2.2	22	100	0	98	10	22	48	18	1.77
92900--92998	9	10.3	9	77	10	81	28	28	27	16	1.97
92906--92999	19	4.8	19	77	16	79	28	28	25	17	1.97
92925--92999	29	2.5	31	89	8	120	29	26	26	17	1.97
99182--99271	31	2.9	30	82	8	110	27	28	26	16	1.97
100141--100178	7	5.4	7	100	0	76	26	28	28	15	1.96
100175--100215	5	7.8	5	84	10	55	4	21	53	19	1.63
100168--100216	22	2.2	22	100	0	98	10	22	48	18	1.77
100214--100268	19	2.9	19	94	0	92	29	34	23	12	1.92
100212--100329	38	3.1	37	83	13	118	28	28	27	15	1.96
100218--100330	19	5.9	18	78	16	88	29	29	25	15	1.96
100256--100329	29	2.5	29	91	6	114	29	27	27	16	1.97
100212--100329	9	12.3	9	78	10	101	28	28	27	15	1.96
102450--102513	31	2.1	30	85	2	83	23	6	10	59	1.54
102460--102521	30	2.0	31	84	3	81	25	11	9	53	1.67
102649--102684	13	2.8	13	95	0	63	36	16	8	38	1.79
110603--110702	34	2.8	36	87	6	150	44	13	13	30	1.81
114529--114590	24	2.7	22	80	11	79	83	6	9	0	0.79
114529--114593	32	2.1	31	83	16	82	84	6	9	0	0.77
115192--115235	22	2.0	22	91	8	72	38	22	11	27	1.88
115671--115706	18	2.0	18	94	0	63	16	8	33	41	1.78
116189--116296	36	3.0	36	100	0	216	25	19	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117051--117680	105	6.0	105	88	3	869	33	25	17	23	1.96
118227--118326	34	2.8	36	89	6	159	44	14	13	29	1.82
118709--118782	34	2.2	34	83	4	89	28	4	8	59	1.44
118913--118947	16	2.1	18	89	10	56	25	8	0	65	1.21
127332--127496	57	2.9	57	88	0	249	36	13	26	24	1.92
129345--129381	2	19.0	2	88	5	58	48	0	0	51	1.00
129566--129668	39	2.6	39	81	17	133	46	1	16	34	1.58
135574--135802	114	2.0	114	94	1	406	37	22	12	27	1.90
138273--138303	15	2.1	15	93	0	53	38	0	0	61	0.96
138926--138999	34	2.1	36	78	14	84	44	18	0	36	1.50
138995--139102	33	3.2	35	84	7	134	37	0	22	39	1.60
139227--139284	29	2.0	29	82	0	71	34	12	27	25	1.91
139700--139761	22	2.8	20	73	17	52	30	0	4	64	1.14
143631--143657	6	4.5	6	100	0	54	0	29	0	70	0.88

Tables:   1

The End!