genome.fa.s5719.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005719.1 Hibiscus syriacus cultivar Beakdansim tig00013371_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113209

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10382--10451	32	2.2	31	80	7	77	31	12	22	32	1.92
10395--10459	32	2.0	32	84	0	85	33	12	20	33	1.89
31159--31251	24	3.9	24	85	1	98	27	24	24	22	2.00
31159--31251	48	2.0	47	82	2	114	27	24	24	22	2.00
34694--34767	22	3.3	22	79	7	78	22	13	28	35	1.92
36167--36258	43	2.1	43	85	0	130	43	8	20	27	1.81
38025--38429	214	1.9	210	93	4	697	32	22	14	29	1.94
42822--42872	24	2.1	24	85	0	66	17	7	1	72	1.18
43350--43423	20	3.6	20	70	13	60	54	1	5	39	1.32
44879--44989	56	2.0	56	94	0	195	26	12	9	52	1.68
47423--47466	13	3.5	13	84	6	63	20	47	18	13	1.82
53334--53372	20	2.0	20	89	0	60	33	10	23	33	1.88
53697--53750	23	2.3	23	83	0	63	25	31	27	14	1.95
54500--54554	23	2.2	26	78	21	80	21	25	7	45	1.77
54506--54571	23	2.9	23	95	0	114	21	33	9	36	1.85
70036--70075	21	1.9	21	89	0	62	10	25	40	25	1.86
70056--70107	23	2.3	23	77	6	63	19	21	38	21	1.94
73923--73962	21	1.9	21	85	10	55	35	10	2	52	1.48
86711--86752	15	2.8	15	92	0	66	57	14	19	9	1.64
86712--86767	15	3.7	15	87	2	58	60	10	19	8	1.55
90603--90713	51	2.2	51	79	12	122	54	6	36	2	1.40
90601--90763	90	1.8	89	82	6	213	52	7	36	3	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91255--91285	12	2.6	12	94	0	53	12	6	9	70	1.31
92685--92741	4	14.2	4	92	0	60	40	0	0	59	0.97
92685--92741	6	9.5	6	80	0	60	40	0	0	59	0.97
92688--92740	18	2.9	18	80	0	70	37	0	0	62	0.96
92801--93061	85	3.1	84	91	2	362	31	16	21	30	1.95
92801--93096	85	3.5	85	88	3	348	31	17	21	29	1.96
99600--99642	13	3.3	13	96	0	77	30	13	23	32	1.93
106843--106879	18	2.1	18	100	0	74	35	10	37	16	1.83

Tables:   1

The End!