genome.fa.s5720.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005720.1 Hibiscus syriacus cultivar Beakdansim tig00013372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92739

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2192--2230	19	2.1	19	85	9	53	56	5	0	38	1.22
8773--8799	14	1.9	14	100	0	54	44	0	7	48	1.31
9368--9413	19	2.4	18	82	13	56	52	2	2	43	1.25
9551--9602	23	2.2	23	86	10	70	48	0	1	50	1.12
13797--13922	40	3.2	40	79	4	137	23	6	19	51	1.69
15431--15469	20	1.9	21	84	5	53	33	7	2	56	1.41
15456--15496	18	2.3	19	79	12	50	41	7	0	51	1.30
22033--22071	20	2.0	20	100	0	78	30	20	2	46	1.64
22625--22669	25	2.0	24	83	16	60	28	4	13	53	1.59
22981--23071	40	2.3	42	76	20	104	53	6	1	38	1.34
23012--23062	19	2.6	19	78	6	57	49	0	0	50	1.00
23280--23338	31	1.9	31	89	0	91	52	16	3	27	1.60
23420--23552	66	2.0	68	95	2	243	48	12	12	27	1.77
27856--27898	21	2.0	21	86	0	59	30	27	25	16	1.97
27878--28026	67	2.2	66	89	1	217	26	27	28	18	1.98
28328--28399	29	2.5	29	90	0	108	37	11	12	38	1.79
28414--28472	30	1.9	31	86	3	84	37	6	22	33	1.80
28692--28757	22	3.0	22	95	4	125	19	27	25	27	1.99
34766--34808	21	2.0	21	86	0	59	30	27	25	16	1.97
34788--34937	67	2.3	66	89	1	219	26	28	28	18	1.98
35238--35309	29	2.5	29	90	0	108	37	11	12	38	1.79
35324--35382	30	1.9	31	86	3	84	37	6	22	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35601--35667	22	3.0	22	100	0	134	19	26	26	26	1.99
38506--38584	2	39.5	2	94	0	140	50	0	1	48	1.08
44306--44340	2	17.5	2	87	0	52	51	0	2	45	1.16
61668--61757	27	3.5	26	75	14	87	50	3	2	44	1.31
61801--61836	10	3.8	9	92	3	54	52	2	0	44	1.15
62717--62754	20	1.9	20	88	0	58	23	18	26	31	1.97
63678--63775	51	1.9	51	89	0	151	32	11	21	34	1.89
64885--64939	20	2.8	20	94	0	101	21	29	20	29	1.98
64884--64953	20	3.5	20	86	1	88	27	25	18	28	1.98
73543--73593	21	2.4	21	100	0	102	37	21	11	29	1.89
73596--73652	20	2.8	20	81	2	60	35	15	17	31	1.92
73546--73652	21	5.2	21	79	4	78	36	18	14	29	1.91
74986--75048	32	2.0	32	90	3	101	33	11	25	30	1.90
91131--91283	77	2.0	76	88	3	227	43	13	13	30	1.81
92653--92694	22	1.9	22	85	0	57	47	9	19	23	1.78

Tables:   1

The End!