genome.fa.s5721.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005721.1 Hibiscus syriacus cultivar Beakdansim tig00013376_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96963

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4797--4828	2	16.5	2	93	6	57	50	0	0	50	1.00
4800--4825	13	2.0	13	100	0	52	46	0	0	53	1.00
4798--4827	15	2.0	15	100	0	60	46	0	0	53	1.00
12812--12845	14	2.3	15	90	10	52	50	0	2	47	1.16
15532--15593	25	2.4	26	91	2	99	50	1	3	45	1.27
18337--18388	21	2.5	21	81	3	61	38	19	25	17	1.93
19007--19048	19	2.2	19	86	0	57	50	26	19	4	1.67
19044--19133	19	4.7	19	91	2	144	11	18	22	47	1.80
19044--19133	39	2.3	38	96	1	162	11	18	22	47	1.80
19044--19144	39	2.6	39	89	4	116	9	19	24	45	1.81
19157--19193	14	2.6	14	95	0	65	10	24	24	40	1.87
19106--19179	33	2.2	33	85	0	103	10	21	27	40	1.86
19124--19217	47	2.0	48	87	2	136	11	23	25	39	1.88
19184--19242	20	3.0	20	76	16	59	13	22	18	45	1.84
21304--21370	21	3.2	21	66	6	55	23	35	20	19	1.95
21252--21370	42	2.8	42	76	12	102	23	36	17	22	1.95
22730--22765	14	2.6	14	95	0	63	30	0	25	44	1.54
22924--23074	19	8.7	19	66	21	80	16	21	19	43	1.88
22928--23054	33	3.9	32	83	8	166	15	21	18	44	1.87
22921--23053	66	2.0	66	92	0	221	17	21	18	42	1.89
25534--25587	24	2.2	24	90	0	81	38	20	16	24	1.92
26633--26710	20	3.9	20	94	0	129	38	23	21	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26734--26787	14	3.5	14	77	22	63	11	20	20	48	1.80
26716--26786	33	2.2	33	84	0	88	19	19	21	39	1.93
26729--26806	33	2.4	33	91	0	120	12	23	21	42	1.87
26896--26930	14	2.5	14	85	0	52	48	20	0	31	1.50
28694--28762	26	2.6	27	73	15	72	52	15	10	21	1.73
28793--28881	19	4.7	19	84	5	108	39	22	23	14	1.91
28893--28950	14	3.9	14	77	16	62	10	17	24	48	1.78
28888--28966	32	2.4	33	93	2	133	11	18	22	46	1.81
28951--29005	20	2.8	19	83	8	65	16	23	23	36	1.94
29487--29531	18	2.5	18	88	0	72	13	15	44	26	1.83
30851--30893	20	2.2	20	86	0	59	48	20	18	11	1.79
31158--31201	22	2.0	22	95	0	79	18	15	45	20	1.85
31389--31502	20	5.7	20	81	8	115	23	18	26	31	1.97
31369--31503	20	6.7	19	80	9	99	23	17	25	33	1.96
31492--31584	20	4.5	21	78	4	100	17	24	18	39	1.91
31492--31584	41	2.3	41	100	0	150	17	24	18	39	1.91
32438--32494	30	1.9	30	88	0	87	38	8	12	40	1.74
34525--34556	15	2.1	15	100	0	64	59	0	6	34	1.23
37291--37317	14	1.9	14	100	0	54	22	22	18	37	1.95
38440--38472	15	2.2	15	94	0	57	39	24	33	3	1.71
39360--39543	29	6.4	29	86	6	196	41	22	3	32	1.72
39397--39543	29	5.1	29	91	1	224	38	24	4	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39400--39543	57	2.5	57	87	4	209	39	23	4	31	1.76
46613--46678	29	2.3	28	79	5	78	48	21	1	28	1.59
46633--46739	29	3.7	29	84	2	135	42	27	6	24	1.79
46739--46779	18	2.3	18	91	4	66	24	17	41	17	1.89
47508--47587	2	40.0	2	100	0	160	50	0	0	50	1.00
47902--47927	12	2.2	12	100	0	52	26	19	46	7	1.77
57566--57594	14	2.1	14	100	0	58	34	0	6	58	1.25
60555--60617	23	2.7	23	95	2	108	47	6	34	11	1.64
62699--62741	21	2.0	21	81	0	50	30	30	25	13	1.94
64329--64396	23	3.0	23	91	0	100	20	27	26	25	1.99
67631--67662	13	2.4	14	94	5	57	0	15	34	50	1.45
71595--71624	2	15.0	2	92	0	51	46	0	3	50	1.18
71667--71701	2	17.5	2	93	0	61	48	2	0	48	1.16
72273--72328	18	3.1	18	75	14	51	46	5	1	46	1.36
81016--81051	18	1.9	19	88	5	56	47	2	2	47	1.31
85619--85673	6	9.0	6	84	11	58	85	10	3	0	0.72
85619--85672	11	5.0	11	80	17	60	85	11	3	0	0.73
85625--85681	27	2.2	26	84	6	71	82	12	5	0	0.82
85625--85675	27	1.9	26	88	4	75	84	9	5	0	0.78
95744--95772	15	1.9	15	100	0	58	48	20	0	31	1.50

Tables:   1

The End!