genome.fa.s5722.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005722.1 Hibiscus syriacus cultivar Beakdansim tig00013377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54592

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4852--4878	4	6.8	4	100	0	54	77	0	0	22	0.76
5030--5108	29	2.5	31	76	15	83	56	5	11	26	1.55
5770--5805	9	4.1	9	89	7	56	77	0	0	22	0.76
5690--5992	120	2.6	119	90	4	465	41	16	19	22	1.90
5690--6028	115	2.9	115	86	6	447	44	14	18	22	1.86
6041--6109	29	2.5	28	80	4	68	55	5	14	24	1.61
7179--7814	216	2.9	218	84	3	809	26	16	23	33	1.95
7778--8311	139	3.8	139	80	5	566	23	16	27	31	1.96
7760--8309	278	2.0	277	81	5	655	23	17	27	31	1.97
8629--8772	66	2.2	66	83	6	175	37	12	20	29	1.89
16022--16100	29	2.5	31	78	12	90	55	5	12	26	1.57
16237--16294	29	2.0	29	83	6	73	48	6	20	24	1.74
19090--19145	28	2.0	28	93	6	96	48	14	7	30	1.70
20483--20527	19	2.3	19	80	7	54	44	6	4	44	1.50
29436--29470	17	1.9	19	88	11	56	31	8	34	25	1.86
41140--41181	18	2.3	19	83	4	50	64	2	4	28	1.26
44796--44856	15	4.2	15	81	14	65	39	0	0	60	0.97
44796--44832	3	13.0	3	88	11	60	32	0	0	67	0.91
44788--44844	12	4.4	13	85	12	73	35	0	0	64	0.93
46333--46455	30	4.1	30	80	3	140	19	14	8	56	1.64
46340--46462	59	2.1	60	85	1	167	17	15	9	56	1.65
47989--48022	4	9.0	4	93	6	54	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51796--51902	38	2.9	37	86	6	146	35	20	11	32	1.88
51990--52041	26	2.0	27	85	11	72	34	11	7	46	1.69
53419--53591	53	3.3	53	95	0	310	31	19	26	23	1.98
53580--53621	22	1.9	22	85	0	57	30	11	28	28	1.92
53954--54230	107	2.6	105	80	6	306	29	17	19	32	1.95
53954--54234	54	5.3	55	82	5	319	29	17	20	32	1.96

Tables:   1

The End!