Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005724.1 Hibiscus syriacus cultivar Beakdansim tig00013379_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66508

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3956--3985
13
2.3
13
100
0
60
23
16
0
60
1.36
5990--6027
19
2.0
20
94
5
69
28
15
28
26
1.96
5995--6153
63
2.5
61
87
8
212
33
18
21
26
1.97
6628--6913
149
1.9
149
97
0
536
30
13
20
36
1.91
6891--6936
23
2.0
23
86
0
65
21
21
26
30
1.99
12338--12641
149
2.0
149
96
0
563
28
15
20
35
1.93
13253--13319
20
3.3
20
89
0
98
34
19
29
16
1.94
13339--13420
20
4.0
19
81
13
83
25
19
32
21
1.97
13340--13438
21
4.8
20
82
13
110
24
18
35
22
1.96
13518--13576
30
2.0
29
90
9
93
44
16
6
32
1.74
13518--13575
29
1.9
30
93
6
100
44
17
5
32
1.70
14853--14900
19
2.5
20
82
3
62
29
12
6
52
1.63
16186--16259
20
3.7
20
82
10
96
28
22
28
20
1.99
16177--16259
41
2.0
41
90
4
132
26
25
27
20
1.99
16280--16338
19
2.9
20
73
12
66
22
18
33
25
1.96
16322--16354
13
2.5
13
95
0
57
21
21
39
18
1.93
16449--16506
30
2.0
29
90
10
91
44
17
5
32
1.70
16449--16508
29
2.0
30
93
6
104
43
16
6
33
1.74
17300--17339
17
2.3
18
86
4
55
30
2
2
65
1.19
21509--21550
7
6.0
7
82
0
57
45
35
0
19
1.50
21506--21549
21
2.1
21
91
0
70
47
31
0
20
1.50
21611--21656
7
6.6
7
82
0
56
47
30
0
21
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21611--21656
14
3.3
14
87
0
65
47
30
0
21
1.51
21607--21661
21
2.7
21
86
8
69
45
30
0
23
1.53
24672--24724
26
2.0
27
82
14
65
67
1
0
30
1.01
32903--32941
18
2.2
18
90
0
60
38
10
0
51
1.36
34804--34858
28
2.0
28
82
7
67
34
20
7
38
1.80
34975--35030
21
2.7
21
78
10
69
33
0
0
66
0.92
35430--35456
13
2.1
13
100
0
54
77
0
14
7
0.97
36787--36901
60
1.9
60
82
3
142
25
27
14
32
1.95
36927--36989
33
1.9
33
90
0
99
26
15
34
22
1.94
37052--37105
27
2.0
27
92
0
90
27
16
31
24
1.96
42136--42160
10
2.5
10
100
0
50
16
0
0
84
0.63
49001--49277
81
3.4
81
77
5
276
32
19
14
33
1.92
55683--55732
21
2.4
21
83
6
66
26
4
18
52
1.63
61106--61171
34
1.9
35
90
3
107
53
13
16
16
1.74

Tables:   1

The End!