genome.fa.s5725.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005725.1 Hibiscus syriacus cultivar Beakdansim tig00013380_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59557

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532--571	12	3.2	12	85	7	53	17	17	0	65	1.28
643--1345	45	16.0	45	85	8	977	25	23	10	40	1.87
643--1345	132	5.3	135	85	7	977	25	23	10	40	1.87
4135--4238	23	4.5	24	74	9	83	51	17	10	20	1.74
11021--11083	32	2.0	33	84	12	87	42	26	4	25	1.75
19660--19707	19	2.6	19	93	3	80	31	2	10	56	1.45
19824--20964	198	5.9	198	94	4	1919	36	15	16	31	1.90
19824--20964	395	2.9	395	94	4	1960	36	15	16	31	1.90
22421--22488	21	3.4	18	69	21	55	36	8	35	19	1.83
22421--22518	6	16.3	6	80	0	70	36	7	34	21	1.81
22436--22522	3	29.0	3	77	0	84	35	5	34	24	1.79
22424--22514	42	2.2	42	91	0	146	35	7	35	21	1.83
22421--22518	18	5.4	18	78	0	88	36	7	34	21	1.81
23982--24693	184	3.9	184	97	0	1316	35	14	16	33	1.89
27155--27219	25	2.6	25	80	0	85	35	9	13	41	1.77
27506--27569	23	2.8	23	87	0	92	35	6	20	37	1.78
27506--27578	23	3.2	23	82	7	85	34	5	20	39	1.76
27843--27893	25	2.0	25	92	0	84	33	7	19	39	1.81
28187--28223	18	2.1	18	89	0	56	32	5	10	51	1.60
28179--28225	24	2.0	24	86	0	67	34	4	14	46	1.64
28482--28568	39	2.2	39	95	0	156	48	20	13	17	1.81
28969--29032	23	2.8	23	87	0	92	35	6	20	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28969--29041	23	3.2	23	82	7	85	34	5	20	39	1.76
31877--31973	42	2.3	42	96	0	176	27	16	20	35	1.94
31847--32146	41	7.2	41	75	7	144	31	19	17	32	1.95
31901--32145	41	5.9	41	75	8	158	32	19	16	31	1.94
31905--32145	85	2.9	82	79	8	238	31	19	16	32	1.94
35105--35462	42	8.4	42	90	0	491	27	21	18	32	1.97
36053--36109	15	3.6	15	77	11	60	70	15	10	3	1.29
36062--36107	16	2.9	16	84	12	67	67	17	10	4	1.37
36061--36108	17	2.9	17	81	12	64	68	16	10	4	1.33
45115--45470	183	1.9	183	88	3	538	43	12	14	29	1.82
45300--45814	162	3.1	162	83	9	638	41	13	16	28	1.86
45462--46108	183	3.5	183	90	0	1019	41	13	15	28	1.86
47577--47622	21	2.2	20	85	7	65	23	13	15	47	1.80
47925--47970	21	2.2	20	85	7	65	28	10	13	47	1.76
48059--48317	118	2.2	116	85	4	333	29	16	14	38	1.89
56460--56500	7	5.7	7	85	2	55	46	2	0	51	1.14
56460--56500	14	2.9	14	96	3	73	46	2	0	51	1.14

Tables:   1

The End!