genome.fa.s5726.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005726.1 Hibiscus syriacus cultivar Beakdansim tig00013383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55985

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1331--1559	57	4.0	57	93	0	359	35	30	19	14	1.92
1387--1475	27	3.2	27	64	14	72	34	31	19	14	1.92
1398--1490	30	3.2	30	64	14	86	39	27	20	11	1.88
1414--1505	30	3.2	30	64	14	84	39	29	17	14	1.89
7740--7898	85	1.9	85	89	2	248	29	16	22	32	1.95
7870--7947	13	6.0	13	90	0	111	33	17	21	26	1.96
11656--11727	19	3.8	19	83	3	83	31	19	25	23	1.98
12306--12340	18	1.9	18	100	0	70	17	22	34	25	1.96
18407--18569	64	2.5	64	81	3	177	33	21	19	25	1.97
19133--19167	18	1.9	18	100	0	70	17	22	34	25	1.96
20564--20610	3	16.0	3	91	4	78	65	2	0	31	1.04
20713--20738	2	13.0	2	100	0	52	50	0	0	50	1.00
29522--29634	59	1.9	59	85	5	156	35	14	16	33	1.89
31441--31484	21	2.1	21	91	0	70	59	0	2	38	1.10
38960--38995	19	1.9	18	88	5	54	38	0	0	61	0.96
43201--43245	19	2.4	18	78	7	54	73	0	4	22	1.01
43194--43342	27	5.4	27	71	18	94	72	0	8	19	1.09
43281--43388	47	2.4	44	77	15	112	72	0	2	25	0.98
43416--43473	25	2.3	25	84	3	71	67	3	1	27	1.17
44589--44679	39	2.4	36	85	5	119	27	7	24	40	1.82
44665--44899	36	6.6	36	78	12	236	39	13	20	27	1.89
44699--44886	103	1.8	103	85	6	265	38	12	20	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44964--45036	37	2.0	37	91	0	119	42	13	19	24	1.87
44966--45050	37	2.3	37	82	6	102	45	12	17	23	1.83
44937--45177	102	2.3	103	89	0	367	38	11	18	31	1.86
45423--45741	106	3.0	106	86	1	417	23	19	22	34	1.96
46339--46424	32	2.7	32	81	1	84	40	19	8	31	1.81
46356--46429	32	2.3	32	85	2	103	44	17	6	31	1.75
47366--47496	69	1.9	69	93	0	226	25	14	22	36	1.93
47569--47620	13	3.9	13	78	11	52	3	15	1	78	0.98
51891--52142	4	62.5	4	73	17	80	69	0	5	24	1.14
51952--52019	26	2.5	27	79	9	59	75	0	8	16	1.05
52055--52179	2	64.5	2	75	15	66	60	0	1	36	1.12
52031--52169	43	3.1	42	82	11	143	64	0	2	33	1.11
52023--52197	51	3.4	51	82	10	214	65	1	1	32	1.10
54159--54214	23	2.2	26	78	15	64	26	1	3	67	1.16

Tables:   1

The End!