Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005728.1 Hibiscus syriacus cultivar Beakdansim tig00013386_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 971753
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 3 of 6
Found at i:363208 original size:42 final size:43
Alignment explanation
Indices: 363115--363213 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
363105 ATTTATGTGT
* *
363115 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
363156 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
363198 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
363214 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:367912 original size:43 final size:43
Alignment explanation
Indices: 367861--368124 Score: 243
Period size: 43 Copynumber: 6.1 Consensus size: 43
367851 AAAAAAAAAT
367861 GCCGCAAAAAGTCAAGATCTATAGCGGCGTTTTTGGAACAAAC
1 GCCGCAAAAAGTCAAGATCTATAGCGGCGTTTTTGGAACAAAC
* *
367904 GCAGC-AAAAGATCGAGATCTATAGCGGCGTTTTTGGAACAAAC
1 GCCGCAAAAAG-TCAAGATCTATAGCGGCGTTTTTGGAACAAAC
* * * * *
367947 ACCGCAAAAGGTCGAGATCTATAGCAGCATTTTTGGATACAAAC
1 GCCGCAAAAAGTCAAGATCTATAGCGGCGTTTTTGGA-ACAAAC
* * * * ***
367991 GCCG-AAAATGTCAAGTTCTCTAGCGACGTTTCTACCAA-AAAC
1 GCCGCAAAAAGTCAAGATCTATAGCGGCGTTT-TTGGAACAAAC
* * *
368033 GCCGTAAAAGGTCAAGATCTATAGCGG-GTTTTTGGAAAAAAAAC
1 GCCGCAAAAAGTCAAGATCTATAGCGGCGTTTTTGG--AACAAAC
* * *
368077 GCCGC-AAAAGAT-TAGATATATAACGGCGTTTTTGGACACAAAC
1 GCCGCAAAAAG-TCAAGATCTATAGCGGCGTTTTTGGA-ACAAAC
368120 GCCGC
1 GCCGC
368125 TAATTACCAT
Statistics
Matches: 179, Mismatches: 31, Indels: 22
0.77 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 18 0.10
43 128 0.72
44 32 0.18
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (43 bp):
GCCGCAAAAAGTCAAGATCTATAGCGGCGTTTTTGGAACAAAC
Found at i:368108 original size:44 final size:44
Alignment explanation
Indices: 368027--368112 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
368017 CGTTTCTACC
* * * *
368027 AAAAACGCCGTAAAAGGTCAAGATCTATAGCGGGTTTTTGGAAA
1 AAAAACGCCGCAAAAGATCAAGATATATAACGGGTTTTTGGAAA
*
368071 AAAAACGCCGCAAAAGAT-TAGATATATAACGGCGTTTTTGGA
1 AAAAACGCCGCAAAAGATCAAGATATATAACGG-GTTTTTGGA
368113 CACAAACGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
43 11 0.31
44 25 0.69
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (44 bp):
AAAAACGCCGCAAAAGATCAAGATATATAACGGGTTTTTGGAAA
Found at i:370337 original size:21 final size:21
Alignment explanation
Indices: 370293--370359 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
370283 AATCATATTA
* *
370293 CCCAGGGGGTATAGAATT-CTC
1 CCCAGGGGGTACAG-ATTCCCC
370314 CCCAGGGGGTACAGATTCCCCCC
1 CCCAGGGGGTACAGATT--CCCC
* *
370337 CCCAGGGGGTACCGATTCTCC
1 CCCAGGGGGTACAGATTCCCC
370358 CC
1 CC
370360 TGTCTAACGG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 3 0.08
21 18 0.46
23 18 0.46
ACGTcount: A:0.18, C:0.37, G:0.27, T:0.18
Consensus pattern (21 bp):
CCCAGGGGGTACAGATTCCCC
Found at i:370343 original size:23 final size:23
Alignment explanation
Indices: 370313--370359 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
370303 ATAGAATTCT
370313 CCCCAGGGGGTACAGATTCCCCC
1 CCCCAGGGGGTACAGATTCCCCC
* *
370336 CCCCAGGGGGTACCGATTCTCCC
1 CCCCAGGGGGTACAGATTCCCCC
370359 C
1 C
370360 TGTCTAACGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.15, C:0.45, G:0.26, T:0.15
Consensus pattern (23 bp):
CCCCAGGGGGTACAGATTCCCCC
Found at i:373082 original size:20 final size:20
Alignment explanation
Indices: 373023--373125 Score: 127
Period size: 20 Copynumber: 5.1 Consensus size: 20
373013 AATCAGATTG
373023 CCCAGGGGGTACAGATTCCC
1 CCCAGGGGGTACAGATTCCC
* * *
373043 CGCCATGTGGTACCGATTCCC
1 C-CCAGGGGGTACAGATTCCC
*
373064 CCCAGGGGGAACAGATTCCC
1 CCCAGGGGGTACAGATTCCC
*
373084 CCCAGGGGGTACTGATTCCC
1 CCCAGGGGGTACAGATTCCC
*
373104 CCCTA-GGGGTACCGATTCCC
1 CCC-AGGGGGTACAGATTCCC
373124 CC
1 CC
373126 TTGTCTAACG
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
20 53 0.75
21 18 0.25
ACGTcount: A:0.17, C:0.38, G:0.27, T:0.17
Consensus pattern (20 bp):
CCCAGGGGGTACAGATTCCC
Found at i:378426 original size:16 final size:17
Alignment explanation
Indices: 378400--378432 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
378390 TAAATTATAT
378400 TTACATAATTTTTTTAA
1 TTACATAATTTTTTTAA
378417 TTAC-TAATTTTTTTAA
1 TTACATAATTTTTTTAA
378433 AAAAGTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
TTACATAATTTTTTTAA
Found at i:381177 original size:54 final size:53
Alignment explanation
Indices: 381081--381188 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 53
381071 CATTCTTGTT
* * *
381081 CTACATGTAATGAGTGATTCCTTTACTGTTTTCCAGTACAGTTTTGTAAAAGA
1 CTACATGTAATAAATGATTCCTTTACTGTTTTCAAGTACAGTTTTGTAAAAGA
381134 CTACATGTAATAAATGATTCCTTTTACTGTTTTCAAGTACAGTTTTGTAAAAGA
1 CTACATGTAATAAATGATTCC-TTTACTGTTTTCAAGTACAGTTTTGTAAAAGA
381188 C
1 C
381189 AGGGGGAAAG
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 19 0.37
54 32 0.63
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (53 bp):
CTACATGTAATAAATGATTCCTTTACTGTTTTCAAGTACAGTTTTGTAAAAGA
Found at i:384636 original size:41 final size:41
Alignment explanation
Indices: 384580--384661 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
384570 AATGATGCCA
384580 AAAAGAAGTTAAATGGGTCACCTTTTAAGACAGACAATCGC
1 AAAAGAAGTTAAATGGGTCACCTTTTAAGACAGACAATCGC
384621 AAAAGAAGTTAAATGGGTCACCTTTTAAGACAGACAATCGC
1 AAAAGAAGTTAAATGGGTCACCTTTTAAGACAGACAATCGC
384662 CTTAATGTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (41 bp):
AAAAGAAGTTAAATGGGTCACCTTTTAAGACAGACAATCGC
Found at i:386405 original size:3 final size:3
Alignment explanation
Indices: 386397--386425 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
386387 GATATTTGCT
386397 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
386426 CTAAGCAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:392567 original size:3 final size:3
Alignment explanation
Indices: 392555--392606 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
392545 TTTGTCCGCG
* * *
392555 TAT T-T TAT TAT TAT TGT TAT TAT TAT CTAA TAT TAT TAT TAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
392600 TAT TAT T
1 TAT TAT T
392607 TTTCTTTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:397563 original size:21 final size:21
Alignment explanation
Indices: 397539--397583 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
397529 TGATTTTAAA
397539 AAAATAGA-AAGTTTAAATACT
1 AAAATAGATAA-TTTAAATACT
* *
397560 AAAATTGATAATTTAAGTACT
1 AAAATAGATAATTTAAATACT
397581 AAA
1 AAA
397584 CGTATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (21 bp):
AAAATAGATAATTTAAATACT
Found at i:400189 original size:31 final size:31
Alignment explanation
Indices: 400151--400220 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
400141 CGAGGTGACA
400151 ATATCTTAATTAAATAAAAACGAAAGTAATC
1 ATATCTTAATTAAATAAAAACGAAAGTAATC
* *
400182 ATATCTTAATTAAATAAAAATGAAAGTGATC
1 ATATCTTAATTAAATAAAAACGAAAGTAATC
400213 ATATCTTA
1 ATATCTTA
400221 TGTTTTTTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.51, C:0.09, G:0.07, T:0.33
Consensus pattern (31 bp):
ATATCTTAATTAAATAAAAACGAAAGTAATC
Found at i:407117 original size:73 final size:73
Alignment explanation
Indices: 407034--407180 Score: 181
Period size: 73 Copynumber: 2.0 Consensus size: 73
407024 TTTATTTCTT
* * * *
407034 TCAGCAATTTCAATTTTTGGTAATTTTCTTCTTT-TAAAAAAATC-TTTTAATAATGGTGCCATA
1 TCAGCAATTTCAATATTTGGT-ATTTT-TTCTTTCTAAAAAAATCATTTCAATAAAGGAGCCATA
407097 GAAAATAAAG
64 GAAAATAAAG
* * * *
407107 TCAGCGATTTCAATATTTGGTATTTTTTTTTTCTAAAAAAGTCATTTCGATAAAGGAGCCATAGA
1 TCAGCAATTTCAATATTTGGTATTTTTTCTTTCTAAAAAAATCATTTCAATAAAGGAGCCATAGA
*
407172 ATATAAAG
66 AAATAAAG
407180 T
1 T
407181 AAGAAACAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
71 5 0.08
72 14 0.22
73 44 0.70
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (73 bp):
TCAGCAATTTCAATATTTGGTATTTTTTCTTTCTAAAAAAATCATTTCAATAAAGGAGCCATAGA
AAATAAAG
Found at i:410068 original size:21 final size:23
Alignment explanation
Indices: 410044--410090 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
410034 TTGTGGTATG
410044 TTTATCTAT-CA-TTGAGACACA
1 TTTATCTATACATTTGAGACACA
* *
410065 TTTATCTCTACATTTGTGACACA
1 TTTATCTATACATTTGAGACACA
410088 TTT
1 TTT
410091 TTCATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 8 0.36
22 2 0.09
23 12 0.55
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (23 bp):
TTTATCTATACATTTGAGACACA
Found at i:419900 original size:13 final size:13
Alignment explanation
Indices: 419882--419906 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
419872 AAAAATAAGA
419882 AAAAAATTAAAAG
1 AAAAAATTAAAAG
419895 AAAAAATTAAAA
1 AAAAAATTAAAA
419907 ACATACTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAAATTAAAAG
Found at i:420666 original size:23 final size:22
Alignment explanation
Indices: 420627--420683 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
420617 AATAAGTCAA
* *
420627 TTATATATTTATTTATATTCGT
1 TTATTTATTTATTTATATTCAT
*
420649 TTATTTATTATATTTATATTTAT
1 TTATTTATT-TATTTATATTCAT
420672 TTATTTAATTTA
1 TTATTT-ATTTA
420684 ATAAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.27
23 19 0.63
24 3 0.10
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (22 bp):
TTATTTATTTATTTATATTCAT
Found at i:420678 original size:27 final size:28
Alignment explanation
Indices: 420630--420683 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
420620 AAGTCAATTA
*
420630 TATATTTATTTATATTCGTTT-ATTTAT
1 TATATTTATTTATATTCATTTAATTTAT
*
420657 TATATTTATATT-TATTTATTTAATTTA
1 TATATTTAT-TTATATTCATTTAATTTA
420684 ATAAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (28 bp):
TATATTTATTTATATTCATTTAATTTAT
Found at i:420705 original size:11 final size:12
Alignment explanation
Indices: 420691--420723 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
420681 TTAATAAATA
420691 AATAATTTAT-G
1 AATAATTTATCG
420702 AATAATTTATCG
1 AATAATTTATCG
*
420714 AATATTTTAT
1 AATAATTTAT
420724 TCATTTATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (12 bp):
AATAATTTATCG
Found at i:432084 original size:91 final size:91
Alignment explanation
Indices: 431924--432096 Score: 276
Period size: 91 Copynumber: 1.9 Consensus size: 91
431914 CAATAAACTC
*
431924 ATGTAACATTCTCGGTTGTAACCAAAATTATTACCAATTATGTAACTTTTTAGAGTAGACATGGT
1 ATGTAACATTCTCGGTTGTAACCAAAATTATTACCAATTATGTAACTTTTTAGAGTAAACATGGT
*
431989 AACATTTTAGGTTAAAACAGGCCACA
66 AACATTTTAGGATAAAACAGGCCACA
* * * *
432015 ATGTAACATTCTCGGTTGTAACCGAGATTATTACCAATTGTGTAACTTTTTAGAGTAAACA-GTT
1 ATGTAACATTCTCGGTTGTAACCAAAATTATTACCAATTATGTAACTTTTTAGAGTAAACATGGT
432079 AAACATTTTAGGATAAAA
66 -AACATTTTAGGATAAAA
432097 TCCAACGCAA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
90 2 0.03
91 73 0.97
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (91 bp):
ATGTAACATTCTCGGTTGTAACCAAAATTATTACCAATTATGTAACTTTTTAGAGTAAACATGGT
AACATTTTAGGATAAAACAGGCCACA
Found at i:440043 original size:29 final size:29
Alignment explanation
Indices: 440009--440066 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
439999 TGAATGATAC
440009 TCCATTTCGTTCGTTTCTCATATGATTTG
1 TCCATTTCGTTCGTTTCTCATATGATTTG
440038 TCCATTTCGTTCGTTTCTCATATGATTTG
1 TCCATTTCGTTCGTTTCTCATATGATTTG
440067 GACATCCCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.52
Consensus pattern (29 bp):
TCCATTTCGTTCGTTTCTCATATGATTTG
Found at i:449354 original size:20 final size:21
Alignment explanation
Indices: 449329--449380 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
449319 TTTTCCCAAT
*
449329 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* *
449349 TCGCAACGCGAATTGAGAAAA
1 TCGCAATGCGAATTAAGAAAA
449370 TCGCAATGCGA
1 TCGCAATGCGA
449381 TACTGACTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 11 0.41
21 16 0.59
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:449394 original size:20 final size:20
Alignment explanation
Indices: 449369--449503 Score: 137
Period size: 20 Copynumber: 6.7 Consensus size: 20
449359 AATTGAGAAA
*
449369 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
449389 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* * *
449409 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
449430 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
*
449450 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
449470 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* *
449490 TTCGCAACGTGATA
1 ATCGCAACGCGATA
449504 ATACATAATC
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
19 2 0.02
20 83 0.83
21 13 0.13
22 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:449413 original size:61 final size:61
Alignment explanation
Indices: 449348--449482 Score: 173
Period size: 61 Copynumber: 2.2 Consensus size: 61
449338 GAATAAGTAA
* * * * * *
449348 ATCGCAACGCGA-ATTGAGAAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACT
1 ATCGCAACGCGATAAT-ACAAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACT
* *
449409 ATCGCAATGCGATAATACAAAATCGCAACGAGATACTGACTTTCGCAACGCGATACTGACT
1 ATCGCAACGCGATAATACAAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACT
*
449470 TTCGCAACGCGAT
1 ATCGCAACGCGAT
449483 TCTGACTTTC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
61 61 0.97
62 2 0.03
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.22
Consensus pattern (61 bp):
ATCGCAACGCGATAATACAAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACT
Found at i:450051 original size:20 final size:20
Alignment explanation
Indices: 449997--450055 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
449987 GCGATTCTCT
**
449997 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
450017 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
450037 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
450056 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:450246 original size:25 final size:24
Alignment explanation
Indices: 450192--450246 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
450182 TGTTTATTAT
* *
450192 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
450216 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
450242 TGTTT
1 TGTTT
450247 ATTTTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:451395 original size:18 final size:18
Alignment explanation
Indices: 451374--451418 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
451364 TCCACTTCGG
*
451374 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
451392 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
451410 AAGCCATCA
1 GAGCCATCA
451419 TCTGATCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.29, C:0.47, G:0.13, T:0.11
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:451954 original size:19 final size:20
Alignment explanation
Indices: 451900--451966 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
451890 TAGTTTACTT
* *
451900 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
451920 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
451940 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
451959 TCGCAACG
1 TCGCAACG
451967 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:451974 original size:14 final size:14
Alignment explanation
Indices: 451955--452013 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
451945 ATGCGAAATG
451955 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
451969 AAAATCGCAATACGAAATG
1 AAAATCGC-A-ACG--A-C
451988 AAAATCGCAACGAC
1 AAAATCGCAACGAC
452002 AAAATCGCAACG
1 AAAATCGCAACG
452014 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 20 0.53
15 2 0.05
16 3 0.08
17 3 0.08
18 2 0.05
19 8 0.21
ACGTcount: A:0.51, C:0.24, G:0.15, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:451985 original size:33 final size:33
Alignment explanation
Indices: 451939--452030 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
451929 GGAAATGGCT
451939 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
451972 ATCGCAATACGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
452005 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
452031 TGCGATTTGT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.49, C:0.22, G:0.17, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:452035 original size:19 final size:19
Alignment explanation
Indices: 451939--452035 Score: 88
Period size: 19 Copynumber: 5.6 Consensus size: 19
451929 GGAAATGGCT
451939 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
451958 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
*
451972 ATCGCAATACGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
451991 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
*
452005 ATCGCAACGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
452024 ATCGCAATGCGA
1 ATCGCAATGCGA
452036 TTTGTGTTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 20
0.72 0.06 0.23
Matches are distributed among these distances:
14 20 0.32
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 31 0.49
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:452047 original size:19 final size:18
Alignment explanation
Indices: 452042--452148 Score: 69
Period size: 20 Copynumber: 5.9 Consensus size: 18
452032 GCGATTTGTG
*
452042 TTTCGCGTTGCGATTTCA
1 TTTCGCATTGCGATTTCA
452060 TTTCGCATTGCGATTT--
1 TTTCGCATTGCGATTTCA
* *
452076 TGTCG--TTGTGATTTTCA
1 TTTCGCATTGCGA-TTTCA
**
452093 TTTCGCATTGCGATAGCCA
1 TTTCGCATTGCGAT-TTCA
* *
452112 TTTCCGCGTTGCGATAGTCA
1 TTT-CGCATTGCGAT-TTCA
*
452132 TTTTCGCGTTGCGATTT
1 -TTTCGCATTGCGATTT
452149 TAAGTTTCGT
Statistics
Matches: 71, Mismatches: 10, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
14 5 0.07
15 3 0.04
16 4 0.06
17 4 0.06
18 16 0.23
19 11 0.15
20 25 0.35
21 3 0.04
ACGTcount: A:0.13, C:0.21, G:0.22, T:0.44
Consensus pattern (18 bp):
TTTCGCATTGCGATTTCA
Found at i:452125 original size:20 final size:19
Alignment explanation
Indices: 452091--452146 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
452081 TTGTGATTTT
*
452091 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
452110 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
452130 CATTTTCGCGTTGCGAT
1 CA-TTTCGCGTTGCGAT
452147 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 5 0.15
20 25 0.76
21 3 0.09
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:454038 original size:14 final size:14
Alignment explanation
Indices: 454019--454054 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
454009 ATTGTTTAAT
454019 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
454033 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
454047 TGATTTGT
1 TGATTTGT
454055 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:454220 original size:19 final size:19
Alignment explanation
Indices: 454198--454239 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
454188 CGAGAGAATT
454198 GCAATGCAAAATGAAAATC
1 GCAATGCAAAATGAAAATC
* *
454217 GCAATGCGAAATGAATATC
1 GCAATGCAAAATGAAAATC
454236 GCAA
1 GCAA
454240 CGAGAAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.48, C:0.17, G:0.19, T:0.17
Consensus pattern (19 bp):
GCAATGCAAAATGAAAATC
Found at i:454246 original size:19 final size:19
Alignment explanation
Indices: 454206--454246 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
454196 TTGCAATGCA
* *
454206 AAATGAAAATCGCAATGCG
1 AAATGAAAATCGCAACGAG
*
454225 AAATGAATATCGCAACGAG
1 AAATGAAAATCGCAACGAG
454244 AAA
1 AAA
454247 ATCGCAATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.15, G:0.20, T:0.15
Consensus pattern (19 bp):
AAATGAAAATCGCAACGAG
Found at i:454302 original size:20 final size:20
Alignment explanation
Indices: 454277--454334 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
454267 TTGCATTGCG
*
454277 ATTTTCTCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
454297 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
454317 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
454335 TCAAATGAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:454764 original size:20 final size:20
Alignment explanation
Indices: 454658--454771 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
454648 GATTCTGTAT
* *
454658 TATCTCGTTGCGAAAGTCAA
1 TATCGCGTTGCGAAAGTCAG
* *
454678 AATCGCGTTGTGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
454698 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* ** *
454718 TATCACGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--AAGTCAG
*
454739 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
454759 TATCGCATTGCGA
1 TATCGCGTTGCGA
454772 TTTTCCCAAT
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
19 3 0.04
20 59 0.77
21 13 0.17
22 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:454774 original size:41 final size:41
Alignment explanation
Indices: 454638--454775 Score: 145
Period size: 41 Copynumber: 3.4 Consensus size: 41
454628 AACTTTGAAA
* * **
454638 ATCGCATTGCGATTCTGTATTATCTCGTTGCGAAAGTCAAA
1 ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
* * ** *
454679 ATCGCGTTGTGA--AAGTCAGTATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTGT-ATTATCGCGTTGCGAAAGTCAGT
* * *
454719 ATCACGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
454760 ATCGCATTGCGATTTT
1 ATCGCATTGCGATTTT
454776 CCCAATTCGC
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
39 2 0.03
40 29 0.37
41 45 0.58
42 2 0.03
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (41 bp):
ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
Found at i:454786 original size:41 final size:41
Alignment explanation
Indices: 454698--454793 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
454688 TGAAAGTCAG
* * ** *
454698 TATCGCGTTGCGAAAGTCAGTATCACGTTGCGATTTTGTAT
1 TATCGCGTTGCGATAGTCAGTATCACATTGCGATTTTCCAA
*
454739 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCCAA
1 TATCGCGTTGCGATAGTCAGTATCACATTGCGATTTT-CCAA
454781 T-TCGCGTTGCGAT
1 TATCGCGTTGCGAT
454794 TTACTTATTC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 46 0.96
42 2 0.04
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.35
Consensus pattern (41 bp):
TATCGCGTTGCGATAGTCAGTATCACATTGCGATTTTCCAA
Found at i:468464 original size:23 final size:23
Alignment explanation
Indices: 468438--468485 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
468428 ATAAAGTACA
*
468438 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
468461 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
468484 AT
1 AT
468486 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:468892 original size:21 final size:20
Alignment explanation
Indices: 468862--468915 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
468852 GATAGACACT
*
468862 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
468883 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
468906 TTACATTATA
1 TTACATTATA
468916 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:468903 original size:23 final size:23
Alignment explanation
Indices: 468877--468939 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
468867 ATATAACCAT
468877 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
468900 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
468923 TACCTATTACATCATAT
1 TACCTATTACATTATAT
468940 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:469260 original size:431 final size:431
Alignment explanation
Indices: 468597--469900 Score: 2608
Period size: 431 Copynumber: 3.0 Consensus size: 431
468587 GGATCGATAC
468597 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
468662 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
66 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
468727 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
131 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
468792 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
196 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
468857 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
261 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
468922 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
326 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
468987 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
391 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
469028 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
469093 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
66 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
469158 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
131 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
469223 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
196 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
469288 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
261 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
469353 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
326 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
469418 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
391 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
469459 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
469524 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
66 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
469589 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
131 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
469654 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
196 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
469719 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
261 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
469784 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
326 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
469849 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
391 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
469890 TTTAACAGTGT
1 TTTAACAGTGT
469901 ACTGCGAATT
Statistics
Matches: 873, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
431 873 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (431 bp):
TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
Found at i:469323 original size:21 final size:20
Alignment explanation
Indices: 469293--469346 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
469283 GATAGACACT
*
469293 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
469314 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
469337 TTACATTATA
1 TTACATTATA
469347 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:469334 original size:23 final size:23
Alignment explanation
Indices: 469308--469370 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
469298 ATATAACCAT
469308 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
469331 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
469354 TACCTATTACATCATAT
1 TACCTATTACATTATAT
469371 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:469754 original size:21 final size:20
Alignment explanation
Indices: 469724--469777 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
469714 GATAGACACT
*
469724 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
469745 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
469768 TTACATTATA
1 TTACATTATA
469778 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:469765 original size:23 final size:23
Alignment explanation
Indices: 469739--469801 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
469729 ATATAACCAT
469739 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
469762 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
469785 TACCTATTACATCATAT
1 TACCTATTACATTATAT
469802 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:471082 original size:198 final size:198
Alignment explanation
Indices: 470554--471375 Score: 1495
Period size: 200 Copynumber: 4.1 Consensus size: 198
470544 TTTAAATTAG
* *
470554 TATCGACACAAAATATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
470619 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
470684 CGACAC-TTTTTATATATGGATCGACACTTTATTGATTCACCTTGTAAAAATTCATTCTGGAAAA
131 CGACACTTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAAA
470748 AAA
196 AAA
470751 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
470816 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
470881 CGACAC-TTTTTATATATGGATCGACACTTTATTGATTCACCTCGTAAAAATTCATTCTGGAAAA
131 CGACACTTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGG-AAA
470945 AAAA
195 AAAA
470949 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
471014 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* * ***
471079 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAA
131 CGACACTTTTTTATATATGGATCGACACTTTATTGATGCACCTTG-TAAAAATTCATTCT-GGAA
471144 AAAAA
194 AAAAA
471149 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
471214 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
471279 CGACACTTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAAA
131 CGACACTTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAAA
471344 AAA
196 AAA
*
471347 TATCGACACAAACTATATTAGTATCGACA
1 TATCGACACAAACTATATTAGTGTCGACA
471376 TGACCCTTAA
Statistics
Matches: 603, Mismatches: 18, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
197 187 0.31
198 179 0.30
199 45 0.07
200 190 0.32
201 2 0.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (198 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAAA
AAA
Found at i:471482 original size:37 final size:38
Alignment explanation
Indices: 471441--471520 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
471431 TCTCATTCAT
*
471441 AATTAT-ATTCACATAAAAAAATATAAATCGTATACAA
1 AATTATAAATCACATAAAAAAATATAAATCGTATACAA
** * * *
471478 AATTATAAATCGTATACAAAATTATAAATCTTATACAA
1 AATTATAAATCACATAAAAAAATATAAATCGTATACAA
471516 AATTA
1 AATTA
471521 ACTCGACATT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 6 0.17
38 30 0.83
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.33
Consensus pattern (38 bp):
AATTATAAATCACATAAAAAAATATAAATCGTATACAA
Found at i:471484 original size:19 final size:19
Alignment explanation
Indices: 471457--471520 Score: 110
Period size: 19 Copynumber: 3.4 Consensus size: 19
471447 ATTCACATAA
*
471457 AAAAATATAAATCGTATAC
1 AAAATTATAAATCGTATAC
471476 AAAATTATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
471495 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
471514 AAAATTA
1 AAAATTA
471521 ACTCGACATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.31
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:473352 original size:33 final size:33
Alignment explanation
Indices: 473315--473380 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
473305 CATCTTAATA
*
473315 TCACCCCTTAACACCGAAACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
***
473348 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
473381 CCATCTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.45, G:0.02, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCGAAACTTCTTTCACCACT
Found at i:475538 original size:24 final size:24
Alignment explanation
Indices: 475501--475553 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
475491 CCGTTCTATC
475501 TATTTTCAGAGGATAT-TTAGCTTA
1 TATTTTCAGAGGATATGTTA-CTTA
** *
475525 TATTTTCATCGGATATGTTATTTA
1 TATTTTCAGAGGATATGTTACTTA
475549 TATTT
1 TATTT
475554 AATCGATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (24 bp):
TATTTTCAGAGGATATGTTACTTA
Found at i:475744 original size:20 final size:19
Alignment explanation
Indices: 475698--475744 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
475688 TCCGGTATCA
*
475698 TTTTACCGTTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
475717 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
475738 TTTTACC
1 TTTTACC
475745 TGTTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.19, C:0.17, G:0.09, T:0.55
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:475909 original size:20 final size:20
Alignment explanation
Indices: 475861--475910 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
475851 TCGACACTTT
475861 TAATTTTACCGGTTTTATCA
1 TAATTTTACCGGTTTTATCA
*
475881 T-TTTGTTACCGGTTTTATCA
1 TAATT-TTACCGGTTTTATCA
475901 TAATTTTACC
1 TAATTTTACC
475911 TGGTATATCG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 2 0.08
20 22 0.85
21 2 0.08
ACGTcount: A:0.22, C:0.16, G:0.10, T:0.52
Consensus pattern (20 bp):
TAATTTTACCGGTTTTATCA
Found at i:484426 original size:32 final size:32
Alignment explanation
Indices: 484390--484471 Score: 76
Period size: 32 Copynumber: 2.5 Consensus size: 32
484380 TTTTGGTCAC
*
484390 TAAATATTTTTTTAATTTAATTACT-TAACTTT
1 TAAAT-TTTTTTTAATTTAATCACTCTAACTTT
*****
484422 TAAATTACACCTAATTTAATCACTCTAACTTT
1 TAAATTTTTTTTAATTTAATCACTCTAACTTT
484454 TAAATTTATTTTTTAATT
1 TAAA-TT-TTTTTTAATT
484472 ATATATCAAT
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
31 13 0.36
32 16 0.44
33 2 0.06
34 5 0.14
ACGTcount: A:0.35, C:0.11, G:0.00, T:0.54
Consensus pattern (32 bp):
TAAATTTTTTTTAATTTAATCACTCTAACTTT
Found at i:485607 original size:20 final size:20
Alignment explanation
Indices: 485582--485633 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
485572 GATTTTCAAT
* *
485582 AATCGCAACGCGAATATAAA
1 AATCGCAACGCGAACACAAA
*
485602 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACAAA
485622 AATCGCAACGCG
1 AATCGCAACGCG
485634 TATCCGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.44, C:0.27, G:0.17, T:0.12
Consensus pattern (20 bp):
AATCGCAACGCGAACACAAA
Found at i:485643 original size:20 final size:20
Alignment explanation
Indices: 485601--485971 Score: 455
Period size: 20 Copynumber: 18.5 Consensus size: 20
485591 GCGAATATAA
* *
485601 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
485621 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
485641 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
485661 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
485681 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
485701 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
485721 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
485741 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
*
485762 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
485782 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
485802 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
485822 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
485842 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
485862 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
485882 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
485902 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
485922 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
485942 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
485962 AAATCACAAC
1 AAATCGCAAC
485972 ACTGAAATTT
Statistics
Matches: 306, Mismatches: 35, Indels: 20
0.85 0.10 0.06
Matches are distributed among these distances:
19 3 0.01
20 284 0.93
21 18 0.06
22 1 0.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:486687 original size:24 final size:24
Alignment explanation
Indices: 486648--486694 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
486638 AAATTTGGTC
486648 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
486672 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
486695 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:486886 original size:12 final size:12
Alignment explanation
Indices: 486869--486893 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
486859 ATATAATCCT
486869 GAAGAAGAAAAA
1 GAAGAAGAAAAA
486881 GAAGAAGAAAAA
1 GAAGAAGAAAAA
486893 G
1 G
486894 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:489196 original size:19 final size:19
Alignment explanation
Indices: 489174--489447 Score: 354
Period size: 19 Copynumber: 15.4 Consensus size: 19
489164 CGGAAAATAC
*
489174 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
489193 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
489207 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
489227 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
489241 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
489260 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
489279 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
489293 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
489312 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
489331 AATCGCAATGCGAAATGGA
1 AATCGCAATGCGAAATGAA
489350 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
489369 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
489388 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
489402 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
489421 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
489440 AATCGCAA
1 AATCGCAA
489448 CGAGATAATC
Statistics
Matches: 226, Mismatches: 8, Indels: 42
0.82 0.03 0.15
Matches are distributed among these distances:
14 40 0.18
15 2 0.01
16 11 0.05
17 10 0.04
18 3 0.01
19 147 0.65
20 13 0.06
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:489376 original size:109 final size:105
Alignment explanation
Indices: 489202--489469 Score: 459
Period size: 109 Copynumber: 2.5 Consensus size: 105
489192 AAATCCCAAC
489202 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGA-GAATCGCAATGCGAAATGAAAATCGC
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGATGAATCGCAATGCGAAATGAAAATCGC
*
489266 AATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
65 AATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
*
489307 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGGAAATCGCAATGCGAAATGAAAAT
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGAGAT-G-AATCGCAATGCGAAATGAAAAT
489372 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
62 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
489416 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAT-AATCGCAATGCGAAAT
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATGAATCGCAATGCGAAAT
489470 TATAAACGCA
Statistics
Matches: 155, Mismatches: 3, Indels: 11
0.92 0.02 0.07
Matches are distributed among these distances:
104 32 0.21
105 16 0.10
106 4 0.03
107 5 0.03
108 1 0.01
109 97 0.63
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (105 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATGAATCGCAATGCGAAATGAAAATCGCA
ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
Found at i:489485 original size:52 final size:52
Alignment explanation
Indices: 489202--489469 Score: 455
Period size: 52 Copynumber: 5.0 Consensus size: 52
489192 AAATCCCAAC
489202 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
489255 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
489307 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGGAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGAGA--G-AATCGCAATGCGAA
*
489364 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
489416 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
489468 AT
1 AT
489470 TATAAACGCA
Statistics
Matches: 207, Mismatches: 3, Indels: 11
0.94 0.01 0.05
Matches are distributed among these distances:
52 134 0.65
53 17 0.08
54 4 0.02
55 5 0.02
56 1 0.00
57 46 0.22
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:489566 original size:19 final size:19
Alignment explanation
Indices: 489476--489558 Score: 113
Period size: 20 Copynumber: 4.6 Consensus size: 19
489466 AAATTATAAA
489476 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
489495 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
489515 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
489531 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
489548 CGCATTGCGAT
1 CGCATTGCGAT
489559 AGTCATTTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
14 6 0.11
16 7 0.12
17 7 0.12
19 17 0.30
20 19 0.34
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.43
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:489684 original size:14 final size:14
Alignment explanation
Indices: 489665--489701 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
489655 CATCAATTAC
489665 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
489679 ACAAATCATCTTTT
1 ACAAATCAACTTTT
489693 ACAAATCAA
1 ACAAATCAA
489702 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:491672 original size:14 final size:14
Alignment explanation
Indices: 491653--491709 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
491643 GCGAAATGAA
*
491653 AATCGCAACGACAG
1 AATCGCAACGAAAG
491667 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
491684 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
491700 AATCGCAACG
1 AATCGCAACG
491710 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:491680 original size:33 final size:33
Alignment explanation
Indices: 491634--491726 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
491624 GCGAAACCAA
*
491634 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
491667 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
491700 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
491727 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:491691 original size:19 final size:19
Alignment explanation
Indices: 491597--491731 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
491587 TAGTTTACTT
* *
491597 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
491617 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
491636 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
491655 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
491669 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
491688 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
491702 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
491721 TCGCAATGCGA
1 TCGCAACGCGA
491732 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:491749 original size:19 final size:19
Alignment explanation
Indices: 491727--491855 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
491717 AAAATCGCAA
491727 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
491746 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
491760 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
491779 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
491793 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
491812 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
491831 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
491851 TGCGA
1 TGCGA
491856 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:491769 original size:33 final size:33
Alignment explanation
Indices: 491727--491818 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
491717 AAAATCGCAA
491727 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
491760 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
491793 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
491819 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:492069 original size:92 final size:93
Alignment explanation
Indices: 491899--492277 Score: 735
Period size: 92 Copynumber: 4.1 Consensus size: 93
491889 TTGAATGGAT
491899 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
491964 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
491992 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
492056 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
492084 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
492148 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
492176 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
492241 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
492269 AAATTTACT
1 AAATTTACT
492278 AAGCAATCTA
Statistics
Matches: 284, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
92 184 0.65
93 100 0.35
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:492228 original size:185 final size:185
Alignment explanation
Indices: 491899--492277 Score: 733
Period size: 185 Copynumber: 2.0 Consensus size: 185
491889 TTGAATGGAT
491899 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
491964 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
492029 TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
492084 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
492148 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
*
492213 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAT
131 TA-TATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
492269 AAATTTACT
1 AAATTTACT
492278 AAGCAATCTA
Statistics
Matches: 192, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
184 92 0.48
185 100 0.52
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.22
Consensus pattern (185 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:493994 original size:14 final size:14
Alignment explanation
Indices: 493975--494064 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
493965 TTGAAATGAA
493975 AATCGCAACGAGAG
1 AATCGCAACGAGAG
493989 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
494006 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
494022 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
494041 AATCGCAACGAGAG
1 AATCGCAACGAGAG
494055 AATCGCAACG
1 AATCGCAACG
494065 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:494012 original size:33 final size:33
Alignment explanation
Indices: 493967--494081 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
493957 TCTTTTGGTT
493967 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
494000 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
494033 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
494066 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
494082 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:494013 original size:19 final size:18
Alignment explanation
Indices: 493974--494086 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
493964 GTTGAAATGA
493974 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
493989 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
494006 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
494022 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
494039 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
494055 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
494072 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
494087 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:494117 original size:14 final size:14
Alignment explanation
Indices: 494098--494152 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
494088 TTTGGTTTCG
494098 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
494112 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
494131 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
494145 CGTTGCGA
1 CGTTGCGA
494153 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:494130 original size:33 final size:33
Alignment explanation
Indices: 494082--494152 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
494072 AAAATCGCAA
**
494082 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
494115 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
494148 TGCGA
1 TGCGA
494153 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:494160 original size:33 final size:33
Alignment explanation
Indices: 494093--494174 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
494083 GCGATTTTGG
***
494093 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
494126 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
494159 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
494175 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:494179 original size:20 final size:20
Alignment explanation
Indices: 494105--494193 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
494095 TCGCGTTGCG
494105 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
494125 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
494138 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
494158 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
494178 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
494194 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:494315 original size:33 final size:33
Alignment explanation
Indices: 494273--494343 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
494263 AATACTAACT
494273 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
***
494306 TGAAAATCGCAACGAGAGAATCTTAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
494339 TGAAA
1 TGAAA
494344 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.17, G:0.23, T:0.13
Consensus pattern (33 bp):
TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
Found at i:494576 original size:22 final size:22
Alignment explanation
Indices: 494524--494578 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
494514 TGGTTGTGAG
**
494524 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
494546 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
494568 GGATTTCTTCG
1 GGATTTCTTCG
494579 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:494749 original size:20 final size:20
Alignment explanation
Indices: 494724--494916 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
494714 CTTTAAATAT
494724 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
494744 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
494766 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
494785 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
494805 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
494825 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
494845 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
494865 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
494885 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
494905 CGCGTTGCGATT
1 CGCGTTGCGATT
494917 ATTTAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 127 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:494911 original size:60 final size:60
Alignment explanation
Indices: 494724--494916 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
494714 CTTTAAATAT
**
494724 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
494785 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
494845 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
494905 CGCGTTGCGATT
1 CGCGTTGCGATT
494917 ATTTAAAATC
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 83 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:498859 original size:42 final size:42
Alignment explanation
Indices: 498797--498924 Score: 177
Period size: 42 Copynumber: 3.0 Consensus size: 42
498787 TGAATATTAT
*
498797 TGATGTTGATTT-TATTTAGACTTATTGAGACATATTAGTGTTA
1 TGATGTT-ATTTAT-TTTAGACTTATTGAGACATAATAGTGTTA
* *
498840 TGATGTTATTTATTTTAGACTTATTGAGACTTAATGGTGTTA
1 TGATGTTATTTATTTTAGACTTATTGAGACATAATAGTGTTA
* * *
498882 TGATGTTATTTATTTTAGACTTATTGAAACTTAATGGTGTTA
1 TGATGTTATTTATTTTAGACTTATTGAGACATAATAGTGTTA
498924 T
1 T
498925 TTATTTACTT
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
42 72 0.90
43 8 0.10
ACGTcount: A:0.27, C:0.05, G:0.18, T:0.50
Consensus pattern (42 bp):
TGATGTTATTTATTTTAGACTTATTGAGACATAATAGTGTTA
Found at i:499541 original size:51 final size:51
Alignment explanation
Indices: 499481--499580 Score: 200
Period size: 51 Copynumber: 2.0 Consensus size: 51
499471 ATATTATGAA
499481 TTTTTAAGTATAAATAAACAAGGAAAACACTTATACAATAAGTAGTGTGTT
1 TTTTTAAGTATAAATAAACAAGGAAAACACTTATACAATAAGTAGTGTGTT
499532 TTTTTAAGTATAAATAAACAAGGAAAACACTTATACAATAAGTAGTGTG
1 TTTTTAAGTATAAATAAACAAGGAAAACACTTATACAATAAGTAGTGTG
499581 ATGTAGTAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (51 bp):
TTTTTAAGTATAAATAAACAAGGAAAACACTTATACAATAAGTAGTGTGTT
Found at i:500227 original size:2 final size:2
Alignment explanation
Indices: 500220--500252 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
500210 ACAAAAGAAC
500220 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
500253 TGCTTCTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:500429 original size:23 final size:23
Alignment explanation
Indices: 500394--500440 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
500384 GAACTAATGA
*
500394 AACATGCAGTTACATACTTTCAT
1 AACATACAGTTACATACTTTCAT
*
500417 AACATACATTTACATACTTTCAT
1 AACATACAGTTACATACTTTCAT
500440 A
1 A
500441 TCTTACCTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.21, G:0.04, T:0.36
Consensus pattern (23 bp):
AACATACAGTTACATACTTTCAT
Found at i:500744 original size:23 final size:23
Alignment explanation
Indices: 500656--500744 Score: 83
Period size: 23 Copynumber: 4.0 Consensus size: 23
500646 GTCACATAAA
** * *
500656 ATGTCCCGAAGGACTGCGTAAAA
1 ATGTCCCGAAGGACCACGTAGAT
* *
500679 ATATCCCGAAGGACCATGTA-AT
1 ATGTCCCGAAGGACCACGTAGAT
*
500701 -TGTCCCGAAGGACCACATAGAT
1 ATGTCCCGAAGGACCACGTAGAT
* *
500723 ATGTCCCAAAGGACCGCGTAGA
1 ATGTCCCGAAGGACCACGTAGA
500745 ACCCTCGACT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
21 16 0.30
22 3 0.06
23 34 0.64
ACGTcount: A:0.34, C:0.25, G:0.24, T:0.18
Consensus pattern (23 bp):
ATGTCCCGAAGGACCACGTAGAT
Found at i:500958 original size:14 final size:14
Alignment explanation
Indices: 500939--501007 Score: 84
Period size: 14 Copynumber: 4.7 Consensus size: 14
500929 TTTCATATGG
500939 TCACATAGATCATA
1 TCACATAGATCATA
*
500953 TCACATAGATATATA
1 TCACATAGAT-CATA
*
500968 CTCACATAGCTCATAA
1 -TCACATAGATCAT-A
500984 TCACATAGATCATA
1 TCACATAGATCATA
*
500998 TCATATAGAT
1 TCACATAGAT
501008 ATGTACTCAC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
14 20 0.43
15 17 0.36
16 10 0.21
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.30
Consensus pattern (14 bp):
TCACATAGATCATA
Found at i:500973 original size:30 final size:32
Alignment explanation
Indices: 500939--500998 Score: 97
Period size: 30 Copynumber: 1.9 Consensus size: 32
500929 TTTCATATGG
500939 TCACATAGATCAT-ATCACATAGAT-ATATAC
1 TCACATAGATCATAATCACATAGATCATATAC
*
500969 TCACATAGCTCATAATCACATAGATCATAT
1 TCACATAGATCATAATCACATAGATCATAT
500999 CATATAGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 12 0.44
31 11 0.41
32 4 0.15
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.30
Consensus pattern (32 bp):
TCACATAGATCATAATCACATAGATCATATAC
Found at i:500988 original size:45 final size:45
Alignment explanation
Indices: 500939--501031 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
500929 TTTCATATGG
*
500939 TCACATAGATCATATCACATAGATATATACTCACATAGCTCATAA
1 TCACATAGATCATATCACATAGATATATACTCACATAACTCATAA
* *
500984 TCACATAGATCATATCATATAGATATGTACTCACATAACTCATAA
1 TCACATAGATCATATCACATAGATATATACTCACATAACTCATAA
501029 TCA
1 TCA
501032 TATACCCACT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.30
Consensus pattern (45 bp):
TCACATAGATCATATCACATAGATATATACTCACATAACTCATAA
Found at i:502019 original size:4 final size:4
Alignment explanation
Indices: 501994--502036 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
501984 TTATTAAAAT
* * *
501994 TAAA GAAA TATA TAAA -AAA TAAA TAAA TGAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
502037 AGTGTAAAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:502484 original size:32 final size:32
Alignment explanation
Indices: 502439--502513 Score: 132
Period size: 32 Copynumber: 2.3 Consensus size: 32
502429 TGATTTGAAA
**
502439 AGATAGTACTGCCCGAGGTTCACATGCAATGG
1 AGATAGTGTTGCCCGAGGTTCACATGCAATGG
502471 AGATAGTGTTGCCCGAGGTTCACATGCAATGG
1 AGATAGTGTTGCCCGAGGTTCACATGCAATGG
502503 AGATAGTGTTG
1 AGATAGTGTTG
502514 TCCAGTTCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (32 bp):
AGATAGTGTTGCCCGAGGTTCACATGCAATGG
Found at i:503467 original size:2 final size:2
Alignment explanation
Indices: 503455--503484 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
503445 ATAATACTAC
503455 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
503485 ATACACGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:504206 original size:106 final size:106
Alignment explanation
Indices: 504037--505609 Score: 2606
Period size: 106 Copynumber: 14.8 Consensus size: 106
504027 TGTTCCGAGG
** * * * * *
504037 CCAATATCCTTCGCCGTGAAGTTGAAATTGACTCTGAAACTGGGAAGTTTTTTATTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
* * *
504102 CGGTCCCTTCATCGTGAAGTTGAACTTGCGTTTTCTTGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * *
504143 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
*
504208 CAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * *
504249 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
* *
504314 CGGTCCATTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
504355 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
* *
504420 CGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTTGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* *
504461 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAATTTGTTTGTTGAAAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
504526 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * * * *
504567 CCAATATCATTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTATTTATTGATAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
* *
504632 CGGTCCCTTCGTCGCGAAGTTGAACTTGCGTTGTCTTGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * * **
504673 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTCATTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
504738 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * *
504779 CCAATATCCTTCATTGTGAAGTTAAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
*
504844 CGGTCCCTTTGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* *
504885 CCAATATCCTTCGTTGTGAAGTTGAAATTAGCTTTGAAATTGAGAAGTTGTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
* *
504950 CGGTTCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
*
504991 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTTTGAAATTGAGAAGTTGTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
*
505056 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
505097 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
*
505162 CGGTCCCTTCGTCGTGAAGTTGAACTTGAGTTGTCTGGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
*
505203 CCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
*
505268 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTTTCTGGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * * * *
505309 CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTTATTTACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
505374 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * *
505415 CCAATATCCTTTGCTGTGATGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
*
505480 CGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGT
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
*
505521 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
* *
505586 TGGTACCTTCGTCGTGAAGTTGAA
66 CGGTCCCTTCGTCGTGAAGTTGAA
505610 ACCGCAGGTG
Statistics
Matches: 1380, Mismatches: 87, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 1380 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG
CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
Found at i:507717 original size:26 final size:26
Alignment explanation
Indices: 507666--507718 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
507656 TGAGACATGT
*
507666 GAATGTAAAAAAAAGGAAAAATAATGC
1 GAATGTAAAAAAAA-GAAAAAAAATGC
507693 GAATGTAAAAAAAA-AAAACAAAATGC
1 GAATGTAAAAAAAAGAAAA-AAAATGC
507719 ATAATATGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 6 0.25
27 14 0.58
ACGTcount: A:0.66, C:0.06, G:0.15, T:0.13
Consensus pattern (26 bp):
GAATGTAAAAAAAAGAAAAAAAATGC
Found at i:511035 original size:2 final size:2
Alignment explanation
Indices: 511023--511058 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
511013 ATAATACTAC
511023 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
511059 ATACACGTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:517618 original size:76 final size:76
Alignment explanation
Indices: 517531--517839 Score: 346
Period size: 76 Copynumber: 4.1 Consensus size: 76
517521 CTCACTTGAT
* *
517531 ATTGTTTTTCTTAAAAC-ATATTTGTCTCACTTGAGACAATTTTTACTAGAAAGTAAG-ACATTT
1 ATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACAATTTTTACTA-AAA-TAAGAACATTT
517594 CATTTCACTCAAA
64 CATTTCACTCAAA
* *
517607 ATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACAA-TTTTATTCAAAACAAG-ACATTTC
1 ATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACAATTTTTACT-AAAATAAGAACATTTC
*
517670 ATTTCACT--AC
65 ATTTCACTCAAA
* * * * * *
517680 A-TGTTTTTCCTAAAGCAATATTTGTCTCGCTTGAGACATTTTTTACTCGAAATAAGAAGATTT-
1 ATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACAATTTTTACT-AAAATAAGAACATTTC
*
517743 ATTTTACTCAAA
65 ATTTCACTCAAA
* * ** * *
517755 ATTATTTTTCTTAAAACAAGATGTGTCTCGCTTGAGATGATTTTTACTAAAAAAAGAACATTTTA
1 ATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACAATTTTTACTAAAATAAGAACATTTCA
* *
517820 TTTTACTCAAG
66 TTTCACTCAAA
517831 ATTGTTTTT
1 ATTGTTTTT
517840 AAAGAAGATT
Statistics
Matches: 197, Mismatches: 28, Indels: 16
0.82 0.12 0.07
Matches are distributed among these distances:
72 34 0.17
73 22 0.11
74 5 0.03
75 32 0.16
76 83 0.42
77 21 0.11
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42
Consensus pattern (76 bp):
ATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACAATTTTTACTAAAATAAGAACATTTCA
TTTCACTCAAA
Found at i:517898 original size:21 final size:21
Alignment explanation
Indices: 517874--517934 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
517864 ACAGTTTCCT
517874 TTGAAACAAATTTTGTCTCCC
1 TTGAAACAAATTTTGTCTCCC
*
517895 TTGAAAC--A-GTT-TCT--C
1 TTGAAACAAATTTTGTCTCCC
517910 TTGAAACAAATTTTGTCTCCC
1 TTGAAACAAATTTTGTCTCCC
517931 TTGA
1 TTGA
517935 GACAGTTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
15 8 0.25
17 4 0.12
18 4 0.12
19 4 0.12
21 12 0.38
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.39
Consensus pattern (21 bp):
TTGAAACAAATTTTGTCTCCC
Found at i:517898 original size:36 final size:36
Alignment explanation
Indices: 517847--518062 Score: 279
Period size: 36 Copynumber: 5.9 Consensus size: 36
517837 TTTAAAGAAG
* *
517847 ATTTTGTCTCTCTTGAGACAGTTTCCTTTGAAACAA
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAA
* *
517883 ATTTTGTCTCCCTTGAAACAGTTTCTCTTGAAACAA
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAA
*
517919 ATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAATAA
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAA
517955 ATTTTGTCTCCCCTTGAGACAGTTTCCCTTGAAACAA
1 ATTTTGTCT-CCCTTGAGACAGTTTCCCTTGAAACAA
* * *
517992 ATCTTGTCTCCCTTGAGATAGTTTCCCTCGAAACAGAA
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAAC--AA
* * * *
518030 GATTTTTTTCTCCCTCGAGATAGTCTCCCTTGA
1 -A-TTTTGTCTCCCTTGAGACAGTTTCCCTTGA
518063 GACAGTTTCC
Statistics
Matches: 159, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
36 97 0.61
37 34 0.21
38 2 0.01
39 1 0.01
40 25 0.16
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (36 bp):
ATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAA
Found at i:517977 original size:109 final size:111
Alignment explanation
Indices: 517847--518062 Score: 294
Period size: 109 Copynumber: 2.0 Consensus size: 111
517837 TTTAAAGAAG
* * * * *
517847 ATTTTGTCTCTCTTGAGACAGTTTCCTTTGAAACAAATTTTGTCTCCCTTGAAACAGTTTCTCTT
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATCTTGTCTCCCTTGAAACAGTTTCCCTC
* *
517912 GAAAC-AA-A-TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAATAA
66 GAAACAAAGATTTTTGTCTCCCTCGAGACAGTCTCCCTTGAAATAA
* *
517955 ATTTTGTCTCCCCTTGAGACAGTTTCCCTTGAAACAAATCTTGTCTCCCTTGAGATAGTTTCCCT
1 ATTTTGTCT-CCCTTGAGACAGTTTCCCTTGAAACAAATCTTGTCTCCCTTGAAACAGTTTCCCT
* *
518020 CGAAACAGAAGATTTTTTTCTCCCTCGAGATAGTCTCCCTTGA
65 CGAAACA-AAGATTTTTGTCTCCCTCGAGACAGTCTCCCTTGA
518063 GACAGTTTCC
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
108 9 0.10
109 54 0.59
111 2 0.02
112 1 0.01
113 26 0.28
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (111 bp):
ATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATCTTGTCTCCCTTGAAACAGTTTCCCTC
GAAACAAAGATTTTTGTCTCCCTCGAGACAGTCTCCCTTGAAATAA
Found at i:518002 original size:73 final size:72
Alignment explanation
Indices: 517850--518026 Score: 273
Period size: 73 Copynumber: 2.4 Consensus size: 72
517840 AAAGAAGATT
* * *
517850 TTGTCTCTCTTGAGACAGTTTCCTTTGAAACAAATTTTGTCTCCCTTGAAACAGTTTCTCTTGAA
1 TTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAAACAGTTTCCCTTGAA
*
517915 ACAAATT
66 ACAAATC
* *
517922 TTGTCTCCCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCCCCTTGAGACAGTTTCCCTTGA
1 TTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCT-CCCTTGAAACAGTTTCCCTTGA
517987 AACAAATC
65 AACAAATC
* *
517995 TTGTCTCCCTTGAGATAGTTTCCCTCGAAACA
1 TTGTCTCCCTTGAGACAGTTTCCCTTGAAACA
518027 GAAGATTTTT
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 39 0.41
73 56 0.59
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (72 bp):
TTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAAACAGTTTCCCTTGAA
ACAAATC
Found at i:518127 original size:15 final size:15
Alignment explanation
Indices: 518109--518180 Score: 63
Period size: 15 Copynumber: 4.4 Consensus size: 15
518099 AGATAGTCTT
518109 CCTTGAGACAGTTTC
1 CCTTGAGACAGTTTC
* *
518124 CCTTGAAACAAATTTTGTC
1 CCTTGAGAC--A-GTT-TC
*
518143 TCCCTTGAGACAGTCTC
1 -C-CTTGAGACAGTTTC
518160 CCTTGAGACAGTTTC
1 CCTTGAGACAGTTTC
518175 CCTTGA
1 CCTTGA
518181 AACAAATTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
15 27 0.60
16 1 0.02
17 3 0.07
18 3 0.07
19 3 0.07
20 1 0.02
21 7 0.16
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (15 bp):
CCTTGAGACAGTTTC
Found at i:518166 original size:51 final size:51
Alignment explanation
Indices: 517997--518216 Score: 269
Period size: 51 Copynumber: 4.2 Consensus size: 51
517987 AACAAATCTT
* * * *
517997 GTCTCCCTTGAGATAGTTTCCCTCGAAACAGAAGATTTTTTTCTCCCTCGAGATA
1 GTCTCCCTTGAGACAGTTTCCCTTGAAAC--AA-A-TTTTGTCTCCCTCGAGACA
* * * *
518052 GTCTCCCTTGAGACAGTTTCCATTGAAACATATTTTTTTCTCCCTCGAGATA
1 GTCTCCCTTGAGACAGTTTCCCTTGAAACA-AATTTTGTCTCCCTCGAGACA
* *
518104 GTCTTCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
1 GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTCGAGACA
* *
518155 GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTAGTCTCCCTTGAGACA
1 GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTCGAGACA
* *
518206 GTTTCCATTGA
1 GTCTCCCTTGA
518217 AACAAATTTA
Statistics
Matches: 150, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
51 75 0.50
52 47 0.31
53 1 0.01
54 1 0.01
55 26 0.17
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.35
Consensus pattern (51 bp):
GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTCGAGACA
Found at i:518194 original size:36 final size:36
Alignment explanation
Indices: 518154--518256 Score: 161
Period size: 36 Copynumber: 2.9 Consensus size: 36
518144 CCCTTGAGAC
518154 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTT
1 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTT
*
518190 AGTCTCCCTTGAGACAGTTTCCATTGAAACAAATTT
1 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTT
* * * *
518226 AGTCTCGCTTGAGATAGTTACCCTAGAAACA
1 AGTCTCCCTTGAGACAGTTTCCCTTGAAACA
518257 GAAGATTTTA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 61 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (36 bp):
AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTT
Found at i:518295 original size:13 final size:13
Alignment explanation
Indices: 518277--518304 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
518267 TCTAGCTTGA
518277 GATAGTTTCCCTC
1 GATAGTTTCCCTC
518290 GATAGTTTCCCTC
1 GATAGTTTCCCTC
518303 GA
1 GA
518305 AATAGAAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.36
Consensus pattern (13 bp):
GATAGTTTCCCTC
Found at i:524003 original size:2 final size:2
Alignment explanation
Indices: 523992--524051 Score: 113
Period size: 2 Copynumber: 30.5 Consensus size: 2
523982 TAAATAATTT
523992 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
524033 TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA T
524052 CTCATGTGAT
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 56 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:529677 original size:48 final size:48
Alignment explanation
Indices: 529602--529699 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
529592 CCTAAACAAA
529602 AAGTAAAATTCCCGTTCCATTGAAAACAAACTAGATAGTTCAAAGCTT
1 AAGTAAAATTCCCGTTCCATTGAAAACAAACTAGATAGTTCAAAGCTT
* * *
529650 AAGTAAAATTTCTGTTCCATTGGAAACAAACTAGATAGTTCAAAGCTT
1 AAGTAAAATTCCCGTTCCATTGAAAACAAACTAGATAGTTCAAAGCTT
529698 AA
1 AA
529700 CATTCAAATT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (48 bp):
AAGTAAAATTCCCGTTCCATTGAAAACAAACTAGATAGTTCAAAGCTT
Found at i:535644 original size:37 final size:37
Alignment explanation
Indices: 535594--535664 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
535584 GAGCATGGGT
* *
535594 TACGATCTAAAATTTACGTGCATCAGATGCGTACTGA
1 TACGATCCAAAATTTACATGCATCAGATGCGTACTGA
535631 TACGATCCAAAATTTACATGCATCAGATGCGTAC
1 TACGATCCAAAATTTACATGCATCAGATGCGTAC
535665 CAAGTCAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (37 bp):
TACGATCCAAAATTTACATGCATCAGATGCGTACTGA
Found at i:540514 original size:60 final size:59
Alignment explanation
Indices: 540419--540603 Score: 196
Period size: 59 Copynumber: 3.1 Consensus size: 59
540409 TATAGTAATT
* * * * *
540419 AACACATACTTATAGATGTATAAGTATGTATATCTTTCAATATCTTATTATCTAAAAATA
1 AACACATACTTACACATGTATAAGTATGTACATC-TTCAATATCTTGTTACCTAAAAATA
* * * *
540479 AACACATACTTACACCTGTGTAAGCATGTACATCTTCAAATATATTGGTT-CCT-AAAATA
1 AACACATACTTACACATGTATAAGTATGTACATCTTC-AATATCTT-GTTACCTAAAAATA
* * * * *
540538 AACGCATACTTACACAAGTATAAGTATGTACATC-CCAATATCTTGGTACCCAAAAATA
1 AACACATACTTACACATGTATAAGTATGTACATCTTCAATATCTTGTTACCTAAAAATA
540596 AACACATA
1 AACACATA
540604 GTTATATTGA
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
56 2 0.02
57 9 0.09
58 14 0.14
59 38 0.37
60 37 0.36
61 2 0.02
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (59 bp):
AACACATACTTACACATGTATAAGTATGTACATCTTCAATATCTTGTTACCTAAAAATA
Found at i:540800 original size:59 final size:60
Alignment explanation
Indices: 540672--540840 Score: 196
Period size: 59 Copynumber: 2.8 Consensus size: 60
540662 TGTATATATT
* *** *
540672 CCAATATCTTATTACCTAAAAATAAACACATACTTACAACACCAGTGTAAGTATGCACATCTC
1 CCAATATCTTGTTACCTAAAAATAAACACATACTT---ACATTGGTGTAAGTATGCACATCCC
* * *
540735 CAAATATCTTGTTACCT-AAAATAAACGCATACTTACATTGGTGTAAGTATGTACATCCC
1 CCAATATCTTGTTACCTAAAAATAAACACATACTTACATTGGTGTAAGTATGCACATCCC
* * * *
540794 CCAATATCTTGGTACCTAAAAATAAACACATAATTATATTGATGTAA
1 CCAATATCTTGTTACCTAAAAATAAACACATACTTACATTGGTGTAA
540841 ATATCTTTAT
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
59 35 0.38
60 25 0.27
62 16 0.18
63 15 0.16
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (60 bp):
CCAATATCTTGTTACCTAAAAATAAACACATACTTACATTGGTGTAAGTATGCACATCCC
Found at i:540863 original size:220 final size:216
Alignment explanation
Indices: 540436--540869 Score: 647
Period size: 220 Copynumber: 2.0 Consensus size: 216
540426 ACTTATAGAT
* * * *
540436 GTATAAGTATGTATATCTTTCAATATCTTATTATCTAAAAATAAACACATACTTACACCTGTGTA
1 GTATAAGTATGTATATATTCCAATATCTTATTACCTAAAAATAAACACATACTTACACCAGTGTA
* *
540501 AGCATGTACATCTTCAAATATATTGGTTCCTAAAATAAACGCATACTTACACAAGTATAAGTATG
66 AGCATGCACATCTCCAAATATATTGGTTCCTAAAATAAACGCATACTTACACAAGTATAAGTATG
* *
540566 TACATCCCAATATCTTGGTACCCAAAAATAAACACATAGTTATATTGATGTAAATATCTTTTTGT
131 TACATCCCAATATCTTGGTACCCAAAAATAAACACATAATTATATTGATGTAAATATC-TTTTAT
*
540631 ATTTTTAAAGAAATAAATACCG
195 ATTTTCAAAGAAATAAATACCG
540653 GTATAAGTATGTATATATTCCAATATCTTATTACCTAAAAATAAACACATACTTACAACACCAGT
1 GTATAAGTATGTATATATTCCAATATCTTATTACCTAAAAATAAACACATACTT---ACACCAGT
* * *** *
540718 GTAAGTATGCACATCTCCAAATATCTT-GTTACCTAAAATAAACGCATACTTACATTGGTGTAAG
63 GTAAGCATGCACATCTCCAAATATATTGGTT-CCTAAAATAAACGCATACTTACACAAGTATAAG
*
540782 TATGTACATCCCCCAATATCTTGGTACCTAAAAATAAACACATAATTATATTGATGTAAATATC-
127 TATGTACAT--CCCAATATCTTGGTACCCAAAAATAAACACATAATTATATTGATGTAAATATCT
540846 TTTATATTTTCAAAGAAATAAATA
190 TTTATATTTTCAAAGAAATAAATA
540870 ACTAAAAATA
Statistics
Matches: 195, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
217 51 0.26
219 3 0.02
220 90 0.46
222 51 0.26
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.34
Consensus pattern (216 bp):
GTATAAGTATGTATATATTCCAATATCTTATTACCTAAAAATAAACACATACTTACACCAGTGTA
AGCATGCACATCTCCAAATATATTGGTTCCTAAAATAAACGCATACTTACACAAGTATAAGTATG
TACATCCCAATATCTTGGTACCCAAAAATAAACACATAATTATATTGATGTAAATATCTTTTATA
TTTTCAAAGAAATAAATACCG
Found at i:545156 original size:14 final size:14
Alignment explanation
Indices: 545139--545176 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
545129 TCCGTTCGTC
545139 TATGTTCGTTCA-TT
1 TATGTTCGTT-AGTT
*
545153 TATGTTTGTTAGTT
1 TATGTTCGTTAGTT
545167 TATGTTCGTT
1 TATGTTCGTT
545177 TATGTTCTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 1 0.05
14 20 0.95
ACGTcount: A:0.13, C:0.08, G:0.18, T:0.61
Consensus pattern (14 bp):
TATGTTCGTTAGTT
Found at i:545396 original size:14 final size:14
Alignment explanation
Indices: 545359--545398 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
545349 CTCAATTAAT
545359 TTTATGTTCGTTCA
1 TTTATGTTCGTTCA
* *
545373 TTTATATTCGTTCG
1 TTTATGTTCGTTCA
*
545387 TTTGTGTTCGTT
1 TTTATGTTCGTT
545399 TACGTTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.10, C:0.12, G:0.17, T:0.60
Consensus pattern (14 bp):
TTTATGTTCGTTCA
Found at i:545414 original size:24 final size:24
Alignment explanation
Indices: 545368--545448 Score: 90
Period size: 24 Copynumber: 3.4 Consensus size: 24
545358 TTTTATGTTC
** * *
545368 GTTCATTTATATTCGTTCGTTTGT
1 GTTCATTTACGTTCATTCATTTGT
* *
545392 GTTCGTTTACGTTTATTCATTTGT
1 GTTCATTTACGTTCATTCATTTGT
* *
545416 GTTCATTTACGTTCGTTTATTTGT
1 GTTCATTTACGTTCATTCATTTGT
545440 GTTCATTTA
1 GTTCATTTA
545449 TCATTTTAAT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.14, C:0.12, G:0.16, T:0.58
Consensus pattern (24 bp):
GTTCATTTACGTTCATTCATTTGT
Found at i:545489 original size:31 final size:29
Alignment explanation
Indices: 545454--545512 Score: 91
Period size: 31 Copynumber: 2.0 Consensus size: 29
545444 ATTTATCATT
545454 TTAATGAACGAACACGAACAAACTAAATTTC
1 TTAATGAACGAACACGAA-AAA-TAAATTTC
*
545485 TTAATGAACGAACATGAAAAATAAATTT
1 TTAATGAACGAACACGAAAAATAAATTT
545513 TATTTATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 7 0.26
30 3 0.11
31 17 0.63
ACGTcount: A:0.51, C:0.14, G:0.10, T:0.25
Consensus pattern (29 bp):
TTAATGAACGAACACGAAAAATAAATTTC
Found at i:548594 original size:20 final size:19
Alignment explanation
Indices: 548557--548595 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
548547 AACGATTATC
548557 ATATCTCAACCAAATGTTA
1 ATATCTCAACCAAATGTTA
548576 ATATC-CAACCGAGAATGTTA
1 ATATCTCAACC-A-AATGTTA
548596 TCAATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 6 0.33
20 7 0.39
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (19 bp):
ATATCTCAACCAAATGTTA
Found at i:555651 original size:35 final size:34
Alignment explanation
Indices: 555594--555721 Score: 116
Period size: 35 Copynumber: 3.7 Consensus size: 34
555584 TGAAAGTATT
*
555594 AAAATGGTTTT-TAAGTTTGGTAA-CCAACTTTG
1 AAAATGGTTTTCAAAGTTTGGTAATCCAACTTTG
****
555626 AAAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
1 --AAAATGGTTTTCAAAGTTTGGT-AATCCAACTTTG
****
555663 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAATGGTTTTCAAAGTTTGGT-AATCCAACTTTG
*
555698 AAAATGATTTTCAAAGTTTGGTAA
1 AAAATGGTTTTCAAAGTTTGGTAA
555722 ATGTTTCTTT
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
34 13 0.15
35 65 0.76
36 2 0.02
37 5 0.06
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (34 bp):
AAAATGGTTTTCAAAGTTTGGTAATCCAACTTTG
Found at i:555686 original size:70 final size:70
Alignment explanation
Indices: 555594--555757 Score: 199
Period size: 70 Copynumber: 2.3 Consensus size: 70
555584 TGAAAGTATT
* *
555594 AAAATGGTTTT-TAAGTTTGGTAA-CCAACTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTT
1 AAAATGGTTTTCAAAGTTTGGTAATCCAACTTTG--AAAATGATTTTCAAAGTTTGGTAAATGTT
555657 TCTTTG-
64 TCTTTGA
****
555663 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTGAAAATGATTTTCAAAGTTTGGTAAATGTTT
1 AAAATGGTTTTCAAAGTTTGGT-AATCCAACTTTGAAAATGATTTTCAAAGTTTGGTAAATGTTT
555728 CTTTGA
65 CTTTGA
* *
555734 AAAATAGTTTTTCAAATTTTGGTA
1 AAAAT-GGTTTTCAAAGTTTGGTA
555758 GATGTTTGTT
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
69 11 0.13
70 43 0.52
71 8 0.10
72 20 0.24
ACGTcount: A:0.32, C:0.06, G:0.18, T:0.44
Consensus pattern (70 bp):
AAAATGGTTTTCAAAGTTTGGTAATCCAACTTTGAAAATGATTTTCAAAGTTTGGTAAATGTTTC
TTTGA
Found at i:555770 original size:36 final size:36
Alignment explanation
Indices: 555621--555775 Score: 226
Period size: 35 Copynumber: 4.3 Consensus size: 36
555611 TGGTAACCAA
555621 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
555658 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
555693 CTTTG-AAAATGATTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* * *
555728 CTTTGAAAAATAGTTTTTCAAATTTTGGTAGATGTTT
1 CTTTGAAAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
*
555765 -GTTGAAAAATG
1 CTTTGAAAAATG
555776 ATAATGTGAT
Statistics
Matches: 111, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
35 70 0.63
36 14 0.13
37 27 0.24
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.45
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Done.