Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005729.1 Hibiscus syriacus cultivar Beakdansim tig00013390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123944

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2115--2153
20
2.0
20
85
10
53
41
7
2
48
1.45
2174--2239
2
34.5
2
73
14
50
45
1
3
50
1.26
2173--2239
17
4.1
17
70
12
59
44
1
2
50
1.26
3392--3440
17
2.8
17
85
11
64
4
4
10
81
0.95
6840--6914
21
3.6
21
85
7
91
18
17
29
34
1.94
6842--6914
19
3.5
21
87
7
87
19
17
28
34
1.95
10528--10566
19
2.0
19
85
5
51
33
7
23
35
1.83
10687--10726
15
2.7
15
96
0
71
37
10
27
25
1.88
11817--11992
70
2.5
68
80
7
203
50
10
10
28
1.70
12066--12117
21
2.5
21
100
0
104
19
15
9
55
1.67
12246--12674
100
4.2
103
82
8
495
44
12
10
33
1.75
12247--12674
205
2.1
202
84
5
549
44
12
10
32
1.75
12686--12878
74
2.7
69
80
4
224
31
12
10
45
1.75
12794--13327
202
2.6
202
80
6
556
33
12
11
42
1.79
14087--14182
27
3.6
27
98
0
183
42
0
12
44
1.42
14089--14160
16
5.1
16
63
30
56
41
0
12
45
1.42
17495--17557
2
31.5
2
100
0
126
50
0
0
49
1.00
26398--26473
36
2.1
36
97
0
143
43
14
10
31
1.79
31401--31476
36
2.1
36
97
0
143
43
14
10
31
1.79
32813--33040
84
2.7
83
76
9
237
27
17
17
37
1.92
46402--46453
27
2.0
27
85
11
72
21
11
17
50
1.77
46889--46954
29
2.2
30
84
10
82
53
4
1
40
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46905--46984
31
2.6
30
84
3
90
48
5
1
45
1.32
46933--46963
12
2.6
12
94
0
53
41
6
0
51
1.27
47991--48015
2
12.5
2
100
0
50
48
0
0
52
1.00
48242--48290
22
2.2
22
78
7
55
55
2
0
42
1.11
51239--51278
18
2.3
18
87
8
57
7
10
10
72
1.28
62861--62947
35
2.5
35
81
14
99
39
0
2
58
1.11
63090--63143
17
3.2
17
72
0
54
31
0
3
64
1.11
65569--65609
22
1.9
21
90
5
64
43
0
2
53
1.13
66675--67547
183
4.8
182
88
1
1142
44
13
15
26
1.83
67549--68047
182
2.7
181
88
1
739
44
12
15
28
1.82
68435--68479
19
2.4
19
92
3
74
44
0
17
37
1.49
68598--68626
5
5.8
5
100
0
58
20
0
17
62
1.33
68741--68779
18
2.2
18
86
9
53
48
5
5
41
1.47
69415--69944
198
2.7
194
82
5
600
40
15
13
30
1.86
70338--70378
21
2.0
21
85
0
55
41
17
0
41
1.49
71004--71053
23
2.2
23
92
0
82
38
8
22
32
1.83
71352--71723
197
1.9
199
86
6
540
37
15
16
31
1.89
71904--72133
125
1.8
125
88
0
352
39
15
16
28
1.89
76447--76533
35
2.5
34
77
18
90
55
9
8
27
1.60
76528--76611
34
2.5
33
81
12
91
61
14
2
21
1.43
76524--76600
34
2.2
34
84
11
95
61
16
1
20
1.42
78885--78918
16
2.1
17
88
5
52
64
0
0
35
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84121--84169
20
2.5
20
90
6
73
38
12
24
24
1.90
84250--84302
20
2.7
20
87
0
79
26
13
26
33
1.93
84957--84986
2
15.0
2
100
0
60
50
50
0
0
1.00
85013--85047
2
17.5
2
100
0
70
51
0
0
48
1.00
85364--85435
21
3.4
21
92
0
117
33
29
16
20
1.95
87443--87506
15
4.5
14
82
11
69
28
6
25
40
1.79
87441--87501
27
2.2
27
85
8
79
31
4
24
39
1.77
87739--87823
23
3.7
23
83
0
107
23
21
24
30
1.99
88293--88324
12
2.7
12
95
0
55
3
28
3
65
1.23
93992--94036
20
2.2
20
84
4
54
68
0
2
28
1.01
94157--94449
82
3.6
81
90
2
444
34
8
17
39
1.80
99833--99899
33
2.0
33
100
0
134
25
17
26
29
1.98
99959--100001
20
2.2
20
86
0
59
20
4
20
53
1.63
100013--100104
44
2.0
46
93
4
161
36
6
22
33
1.80
102641--102737
37
2.6
37
86
0
140
41
16
11
30
1.84
103270--103307
19
2.0
19
85
10
51
34
2
0
63
1.09
103609--103636
4
7.0
4
100
0
56
25
0
0
75
0.81
103609--103696
12
7.0
13
75
11
60
18
6
0
75
1.02
103614--103698
17
5.1
17
73
12
68
16
7
0
76
0.99
108137--108170
11
3.0
11
91
4
50
82
8
8
0
0.85
108139--108197
12
4.8
12
74
17
59
81
6
10
1
0.94
108804--108880
22
3.5
22
92
0
127
37
28
14
19
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109681--111373
106
16.0
106
90
1
2535
34
24
17
23
1.96
112412--112450
19
2.1
19
90
0
60
25
0
2
71
0.98
112643--112723
2
40.5
2
100
0
162
49
0
0
50
1.00
112819--112877
29
2.0
29
87
6
84
18
0
10
71
1.14
112947--113029
29
2.8
29
78
8
80
16
9
0
73
1.08
116577--116623
19
2.5
19
75
6
51
68
12
14
4
1.36
123505--123535
14
2.2
14
100
0
62
48
22
9
19
1.78

Tables:   1

The End!