genome.fa.s573.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000573.1 Hibiscus syriacus cultivar Beakdansim tig00001121_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72020

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411--1579	84	2.0	86	87	5	245	37	10	5	45	1.63
7942--8029	42	2.1	42	85	4	115	43	6	10	39	1.65
9321--9367	22	2.1	22	100	0	94	34	21	23	21	1.97
9578--9661	2	42.0	2	100	0	168	50	0	0	50	1.00
10058--10123	16	3.9	16	78	16	71	19	27	19	33	1.96
14807--14849	20	2.2	20	86	0	59	25	18	2	53	1.56
17180--17244	2	33.0	2	96	3	123	49	0	0	50	1.00
17825--17989	59	2.8	60	82	5	208	32	23	6	37	1.81
22964--23016	21	2.5	21	87	0	79	20	24	18	35	1.95
23006--23099	20	4.7	20	78	5	100	37	22	21	19	1.95
23941--23987	24	2.0	24	100	0	94	29	19	17	34	1.94
26363--26456	20	4.7	20	88	2	136	35	24	21	19	1.96
26428--26523	33	2.8	33	88	3	129	43	20	21	13	1.86
26661--26697	14	2.6	14	86	0	56	48	21	0	29	1.50
28676--28784	20	5.4	20	93	0	173	37	22	20	19	1.94
28791--28972	20	9.8	20	73	15	149	18	19	20	41	1.91
30834--30903	19	3.6	19	84	3	104	50	22	15	11	1.76
31239--31312	22	3.4	22	82	0	94	21	14	36	27	1.93
31488--31534	20	2.3	20	100	0	94	19	14	29	36	1.92
31528--31654	20	6.3	20	88	1	191	21	18	18	40	1.91
31528--31654	61	2.1	60	92	1	209	21	18	18	40	1.91
31651--31696	21	2.2	21	88	0	65	41	15	26	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31865--31890	2	13.0	2	100	0	52	50	0	0	50	1.00
32397--32466	33	2.1	34	86	2	97	52	1	2	42	1.24
35852--35951	33	2.9	33	72	22	91	49	1	1	49	1.14
35839--35891	27	2.0	27	85	14	74	47	1	0	50	1.12
35969--36010	18	2.3	18	87	0	57	45	2	2	50	1.27
36276--36328	23	2.3	23	93	6	90	47	11	18	22	1.81
37941--37988	24	2.0	24	91	0	78	29	20	10	39	1.86
38761--38848	43	2.1	41	82	4	104	22	5	5	65	1.35
38886--38983	46	2.1	47	80	1	108	25	14	5	55	1.60
38935--39027	44	2.1	44	84	5	118	23	18	7	50	1.72
41729--41771	21	2.0	21	82	8	52	41	4	0	53	1.21
52656--52720	30	2.2	29	86	2	94	21	29	18	30	1.97
59773--59830	26	2.2	26	100	0	116	36	3	6	53	1.45
62263--62316	22	2.3	23	79	17	58	50	3	1	44	1.30
63204--63257	20	2.7	19	80	8	63	75	0	3	20	0.95
66596--66627	16	2.0	16	100	0	64	25	18	25	31	1.98
67303--67348	18	2.7	17	90	6	67	36	6	28	28	1.82
67866--67947	38	2.2	37	91	4	128	39	39	10	10	1.76
68056--68137	38	2.2	38	91	4	130	37	39	10	12	1.78
68127--68574	228	2.0	223	90	4	701	36	28	12	22	1.90
69319--69417	44	2.2	44	75	21	100	47	3	0	49	1.17
71378--71452	39	1.9	39	97	0	141	28	8	26	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71927--72010	30	2.9	28	76	21	84	47	1	1	50	1.16

Tables:   1

The End!