Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005730.1 Hibiscus syriacus cultivar Beakdansim tig00013391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91109

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
940--1060
63
1.9
63
83
3
154
33
19
22
24
1.97
1040--1086
22
2.0
23
92
8
78
27
19
29
23
1.98
1043--1098
22
2.5
23
82
11
71
32
19
25
23
1.98
2269--2309
21
2.0
21
85
0
55
29
21
19
29
1.98
7874--7945
28
2.5
28
78
10
76
33
15
5
45
1.69
7866--7952
29
3.0
30
79
11
94
32
16
5
45
1.70
28184--28228
23
2.0
23
82
8
56
24
2
13
60
1.45
33041--33449
56
7.3
56
91
0
649
35
17
11
35
1.86
43165--43203
21
1.9
20
89
10
53
41
7
12
38
1.72
46606--46637
15
2.1
15
100
0
64
21
18
28
31
1.97
48505--48614
43
2.5
43
76
12
109
29
17
5
48
1.69
48505--48707
42
4.8
42
75
13
139
26
19
5
47
1.72
48652--48812
42
3.7
42
75
10
128
22
19
4
54
1.62
49101--49157
27
2.1
27
83
0
69
29
12
12
45
1.78
49297--49373
24
3.1
24
86
5
91
50
0
3
45
1.20
56037--56106
24
2.9
24
89
0
104
22
25
22
28
1.99
58046--58716
55
12.1
55
86
1
903
36
11
16
35
1.85
58046--58716
111
6.1
110
87
1
903
36
11
16
35
1.85
58046--58716
166
4.0
166
87
1
907
36
11
16
35
1.85
62179--62383
55
3.7
55
90
0
311
34
10
17
38
1.84
68605--70002
698
2.0
698
99
0
2760
29
15
17
38
1.90
77819--77865
24
2.0
24
83
8
60
57
12
2
27
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81144--81192
19
2.5
19
80
3
53
65
0
12
22
1.26
83751--83778
14
2.0
14
100
0
56
42
28
7
21
1.79
88040--88085
23
2.0
23
83
8
58
56
13
2
28
1.48

Tables:   1

The End!