genome.fa.s5731.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005731.1 Hibiscus syriacus cultivar Beakdansim tig00013392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96564

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58--97	21	2.0	21	85	9	57	32	7	7	52	1.58
92--191	30	3.2	32	83	11	118	34	7	15	44	1.73
251--283	17	1.9	17	93	0	57	48	12	6	33	1.65
2463--2504	14	3.1	14	93	6	77	50	14	21	14	1.78
4408--4504	36	2.7	36	91	0	167	23	19	26	29	1.98
15922--15972	26	2.0	26	84	0	66	35	17	19	27	1.94
16020--16111	38	2.3	40	87	7	134	33	17	25	23	1.96
18551--18601	23	2.3	22	86	3	66	23	23	31	21	1.98
23842--23895	2	27.0	2	96	0	99	50	1	0	48	1.11
24203--24280	23	3.3	23	85	1	102	33	23	19	24	1.97
25139--25169	2	15.5	2	100	0	62	51	0	0	48	1.00
25230--25281	25	2.1	25	92	0	86	48	3	0	48	1.20
25236--25271	19	1.9	18	94	5	63	47	2	0	50	1.15
25218--25281	25	2.8	24	81	13	80	48	3	0	48	1.17
25607--26079	144	3.3	142	80	4	450	33	19	24	22	1.97
25748--26077	146	2.3	145	80	2	349	34	20	23	21	1.97
28764--28905	55	2.6	55	88	2	205	40	14	25	19	1.90
34370--34403	15	2.3	15	94	0	59	26	26	32	14	1.95
34396--34457	32	2.0	31	93	3	106	17	17	46	17	1.84
34417--34461	18	2.5	18	92	0	81	13	17	51	17	1.77
34403--34440	13	2.8	14	88	8	60	15	21	44	18	1.86
36875--36963	7	12.7	7	68	19	53	78	5	13	2	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36848--36896	14	3.5	13	81	13	62	77	6	16	0	0.96
36872--36962	17	4.9	18	69	22	64	79	5	13	2	1.00
38000--38073	32	2.3	32	85	0	94	35	12	24	28	1.91
38349--38472	43	2.9	43	83	0	158	29	29	19	20	1.97
38684--38807	43	2.9	43	85	0	158	30	30	19	19	1.96
38234--39345	335	3.3	335	91	3	1730	32	25	18	23	1.97
38964--39049	34	2.5	34	96	0	163	34	24	19	20	1.96
39436--39514	36	2.2	36	88	0	113	29	20	11	39	1.87
39792--39874	3	26.7	3	79	7	58	42	2	0	55	1.13
39792--39867	28	2.8	27	78	9	84	42	2	0	55	1.14
39800--39879	25	2.9	27	83	12	101	42	3	0	53	1.18
39808--39877	25	2.8	25	91	2	106	41	4	0	54	1.20
40149--40670	145	3.6	145	77	4	480	33	21	24	21	1.97
42289--42319	2	16.0	2	93	6	55	48	0	0	51	1.00
44112--44154	17	2.6	16	78	7	50	39	25	0	34	1.56
45946--45970	2	12.5	2	100	0	50	52	0	0	48	1.00
46296--46373	23	3.3	23	85	1	102	33	23	19	24	1.97
46380--46700	103	3.1	103	97	0	597	36	23	13	25	1.92
51105--51163	23	2.6	23	81	5	66	30	23	23	22	1.99
58450--58490	15	2.7	15	84	3	55	21	2	12	63	1.40
62081--62261	92	2.0	92	92	0	299	38	13	13	33	1.85
64324--64386	28	2.2	28	100	0	126	23	15	20	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71275--71333	31	1.9	31	92	0	100	37	11	18	32	1.87
72185--72217	16	2.1	16	100	0	66	27	24	18	30	1.98
72826--72858	16	1.9	18	88	11	52	36	3	3	57	1.29
76785--76843	29	2.0	31	90	6	95	35	5	16	42	1.71
77043--77084	21	2.0	21	95	0	75	23	21	28	26	1.99
77362--77431	34	2.1	32	86	5	95	31	15	30	22	1.95
79078--79127	21	2.4	21	96	0	91	36	14	10	40	1.79
84751--84916	90	1.9	88	82	2	206	27	13	12	46	1.79
89455--89746	149	2.0	150	83	7	380	41	18	20	19	1.90

Tables:   1

The End!