genome.fa.s5732.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005732.1 Hibiscus syriacus cultivar Beakdansim tig00013399_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96799

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4500--4585	10	7.4	10	74	25	64	55	23	12	8	1.63
4521--4586	24	2.8	24	95	0	123	56	22	13	7	1.63
4487--4575	38	2.3	38	96	0	160	56	21	12	10	1.65
4507--4575	14	5.2	14	81	13	92	55	24	13	7	1.63
13746--13794	18	2.5	20	83	12	75	36	6	12	44	1.67
31082--31126	21	2.1	21	83	0	54	22	26	17	33	1.96
31116--31209	20	4.7	20	81	2	125	38	20	20	21	1.94
31116--31209	41	2.3	40	85	1	125	38	20	20	21	1.94
31116--31229	61	1.9	60	88	1	174	35	21	20	22	1.96
31836--31885	20	2.5	20	90	0	73	18	18	28	36	1.94
31870--31907	20	1.9	20	100	0	76	10	10	21	57	1.61
31872--31915	20	2.2	20	87	0	61	13	11	20	54	1.69
33780--33923	20	7.5	20	81	9	174	41	21	17	19	1.90
33780--33923	40	3.8	40	81	10	192	41	21	17	19	1.90
34474--34576	21	4.9	21	72	9	84	21	36	18	23	1.95
34477--34585	42	2.6	41	78	5	119	20	36	18	24	1.94
36092--36167	33	2.3	34	88	2	118	14	22	19	43	1.87
36092--36176	33	2.5	33	86	1	116	15	22	18	43	1.87
36159--36247	20	4.5	19	86	8	124	17	20	25	35	1.95
36159--36247	40	2.2	40	92	4	144	17	20	25	35	1.95
38551--38613	23	2.7	23	75	0	72	30	23	22	23	1.99
38625--38944	103	3.1	103	96	0	597	37	22	13	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43747--43803	23	2.5	23	91	0	87	26	26	26	21	1.99
43827--44143	103	3.1	103	99	0	616	36	23	13	27	1.92
47135--47188	24	2.2	24	90	0	81	42	20	16	20	1.89
48040--48155	20	5.8	20	85	9	87	23	20	22	33	1.97
48029--48155	40	3.2	40	71	18	120	23	19	22	33	1.97
48029--48155	60	2.1	60	91	2	202	23	19	22	33	1.97
48152--48197	21	2.2	21	88	0	65	36	17	28	17	1.92
51326--51459	51	2.6	51	84	2	153	19	30	27	22	1.98
57761--57814	26	2.1	26	96	3	101	24	29	16	29	1.97
58155--58184	2	15.0	2	92	0	51	50	3	0	46	1.18
58168--58534	36	10.2	36	76	12	280	46	3	6	44	1.46
58208--58534	37	9.2	36	74	16	258	45	3	6	44	1.46
58212--58527	71	4.5	72	79	12	309	45	3	6	44	1.45
58296--58426	11	11.1	11	65	19	50	45	2	4	47	1.36
58401--58458	30	2.0	30	93	3	100	43	5	8	43	1.57
58657--58697	21	2.0	21	90	9	66	21	4	0	73	1.02
59966--60016	21	2.4	22	83	9	61	19	5	0	74	1.02
61666--61725	31	1.9	31	82	3	75	45	3	3	48	1.35
63312--63352	18	2.3	18	91	4	66	29	4	0	65	1.13
65016--65057	18	2.3	18	79	0	57	28	28	19	23	1.98
65409--65461	12	4.4	12	75	0	52	35	22	30	11	1.89
66816--66858	18	2.4	18	88	0	59	20	32	4	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66826--66860	18	1.9	18	100	0	70	17	37	5	40	1.73
68767--68835	23	3.0	23	80	0	84	31	24	24	18	1.98
70252--70296	21	2.1	21	84	8	56	17	24	26	31	1.97
71191--71232	17	2.6	16	85	7	57	42	21	0	35	1.53
71871--71909	18	2.2	18	85	0	51	25	20	0	53	1.45
73597--73636	22	1.9	21	85	10	55	50	17	0	32	1.47
73867--73958	23	4.0	23	82	0	103	31	25	25	18	1.98
75379--75423	21	2.1	21	84	8	56	17	24	26	31	1.97
77505--77596	41	2.2	41	88	0	130	20	28	28	22	1.99
78804--78853	3	16.7	3	100	0	100	32	0	0	68	0.90
79569--79613	18	2.6	18	89	6	67	28	31	4	35	1.77
83289--83329	14	2.9	14	85	0	64	48	21	2	26	1.63
88799--88946	74	2.0	74	100	0	296	31	20	16	32	1.94

Tables:   1

The End!