genome.fa.s5733.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005733.1 Hibiscus syriacus cultivar Beakdansim tig00013400_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92727

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968--1003	14	2.6	14	95	0	63	30	0	25	44	1.54
1181--1278	19	5.7	19	67	22	81	15	21	20	42	1.88
1179--1277	33	3.0	33	89	4	155	17	21	20	41	1.90
3562--3586	12	2.1	12	100	0	50	0	28	0	72	0.86
3761--3814	24	2.2	24	90	0	81	38	20	16	24	1.92
4869--4926	20	2.9	20	94	0	98	37	22	22	17	1.93
4945--5136	19	10.6	19	88	9	287	14	21	17	46	1.84
4945--5136	71	2.6	71	92	4	312	14	21	17	46	1.84
7127--7193	19	3.5	19	83	4	89	37	23	23	14	1.93
7182--7239	14	3.9	14	79	16	71	48	25	17	8	1.75
7166--7244	32	2.4	33	95	2	142	46	24	18	10	1.80
7251--7332	19	4.6	19	77	14	95	13	20	19	46	1.83
7317--7362	20	2.4	19	85	7	65	17	26	21	34	1.95
7287--7370	19	4.4	19	83	4	89	14	22	22	40	1.90
8161--8198	20	1.9	20	88	0	58	50	21	15	13	1.78
8673--8786	20	5.7	20	77	10	90	25	16	24	33	1.96
8775--8867	20	4.5	21	78	4	100	17	24	18	39	1.91
8714--8848	41	3.3	41	84	4	148	20	20	21	37	1.94
8775--8867	41	2.3	41	100	0	186	17	24	18	39	1.91
10747--10802	19	2.8	20	72	8	51	64	1	8	25	1.32
10777--10822	16	2.8	17	77	12	51	65	2	8	23	1.32
11427--11505	24	3.3	24	81	0	95	15	10	15	59	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11677--11780	10	9.4	10	77	13	82	11	12	18	57	1.64
11673--11710	20	1.9	20	94	0	67	18	13	10	57	1.63
11692--11780	23	3.8	23	82	8	108	11	12	19	57	1.64
11715--11755	14	3.2	14	74	25	54	7	17	21	53	1.67
11682--11778	47	2.1	47	90	0	149	10	13	19	56	1.65
11715--11818	33	2.9	35	81	16	124	11	15	18	54	1.70
11677--11802	57	2.2	55	84	8	155	11	14	17	56	1.67
11682--11819	24	5.8	24	75	3	109	12	14	17	55	1.68
13383--13491	33	3.4	33	91	3	170	45	14	8	31	1.74
13482--13521	21	1.9	21	89	0	62	55	5	7	32	1.50
24903--25136	121	1.9	121	97	0	441	26	9	25	38	1.87
30534--30586	23	2.3	22	81	9	61	18	13	13	54	1.70
30999--31049	2	25.5	2	100	0	102	49	0	0	50	1.00
32499--32550	21	2.5	21	96	3	97	19	23	34	23	1.96
35290--35349	23	2.7	22	89	2	84	20	25	31	23	1.98
35269--35349	22	3.8	22	80	9	87	20	24	30	23	1.99
52398--52492	49	2.0	49	91	2	156	49	2	10	37	1.49
56151--56202	23	2.4	22	83	6	61	19	19	28	32	1.96
59541--59643	52	2.0	52	98	0	197	41	13	23	21	1.88
63283--63385	52	2.0	52	98	0	197	21	23	13	41	1.88
67881--67983	52	2.0	52	98	0	197	21	23	13	41	1.88
72543--72608	32	2.1	32	85	0	87	28	4	1	65	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74589--74618	14	2.1	14	100	0	60	30	33	23	13	1.93
83934--84054	64	1.9	63	82	1	152	33	22	20	23	1.97
87913--87959	23	2.0	23	91	0	76	44	34	4	17	1.68
88145--88192	24	2.0	25	95	4	89	43	6	0	50	1.27

Tables:   1

The End!