Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005735.1 Hibiscus syriacus cultivar Beakdansim tig00013404_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89503

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
258--330
34
2.1
34
85
5
94
36
15
23
24
1.93
1199--1246
18
2.8
18
78
6
55
68
2
25
4
1.18
1374--1415
19
2.3
19
92
8
70
26
0
7
66
1.17
3303--3352
2
25.5
2
91
4
84
48
2
0
50
1.12
4614--4651
19
2.0
19
100
0
76
42
21
15
21
1.89
7073--7134
3
21.0
3
80
12
58
3
27
0
69
1.04
7083--7145
19
3.2
19
89
10
92
4
23
0
71
1.05
7073--7137
26
2.5
26
82
2
76
4
26
0
69
1.08
7103--7150
24
1.9
26
87
8
73
4
27
0
68
1.07
11160--11194
18
1.9
18
88
0
52
28
17
0
54
1.43
28354--28501
2
73.5
2
89
1
224
45
4
1
48
1.29
31710--31840
60
2.2
59
81
10
142
31
23
4
40
1.75
32271--32303
16
2.1
16
94
0
57
30
30
18
21
1.97
33802--33878
21
3.6
21
76
16
70
29
14
28
27
1.95
33902--33952
20
2.6
19
85
11
68
25
17
29
27
1.98
35015--35097
31
2.7
32
85
7
102
26
18
24
31
1.97
36306--36345
22
1.9
20
85
10
53
27
22
22
27
1.99
37790--37821
12
2.6
13
90
9
50
15
31
3
50
1.60
47318--47653
171
1.9
173
95
4
606
31
19
8
41
1.81
50715--50753
20
1.9
21
89
5
62
17
0
20
61
1.34
53755--53799
22
2.0
22
91
8
74
55
13
0
31
1.38
58321--58354
2
17.5
2
93
6
61
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60007--60067
23
2.7
23
89
0
95
26
27
26
19
1.99
60106--60254
77
1.9
77
100
0
298
36
21
14
28
1.92
60183--60377
103
1.9
103
98
0
381
36
23
13
26
1.92
60897--60926
15
2.0
15
93
0
51
33
16
0
50
1.46
61466--61496
16
1.9
16
93
0
53
51
16
0
32
1.44
62722--63626
83
11.0
82
82
7
860
34
21
18
25
1.96
62722--63630
163
5.5
163
82
5
899
34
21
18
25
1.96
64282--64319
20
1.9
20
88
0
58
26
10
39
23
1.87
64747--64789
21
1.9
23
86
13
63
16
0
16
67
1.24
65964--65998
16
2.2
16
100
0
70
60
0
5
34
1.21
68887--68928
17
2.5
17
96
0
75
19
11
4
64
1.44
69120--69166
2
23.5
2
100
0
94
48
0
0
51
1.00
69224--69302
3
27.3
3
73
19
53
29
1
2
67
1.12
69242--69276
18
1.9
18
94
0
61
20
2
5
71
1.19
69224--69300
21
3.7
21
79
8
77
29
1
2
66
1.13
69376--69436
18
3.4
18
80
10
63
13
8
1
77
1.07
72880--72988
53
2.1
53
96
3
202
40
24
15
19
1.90
73450--74647
165
7.2
164
78
6
940
29
24
20
25
1.99
73450--74638
248
4.8
246
82
3
1204
29
24
20
25
1.99
73450--74621
84
14.1
84
78
4
983
29
24
20
26
1.99
76142--76190
18
2.7
18
84
9
64
22
2
4
71
1.13
76236--76321
17
4.7
18
75
16
79
13
9
2
74
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76270--76326
18
3.4
16
77
13
53
15
7
0
77
0.98
78475--78507
2
17.0
2
87
6
50
48
0
3
48
1.17
79857--79911
28
2.0
28
85
0
74
32
14
18
34
1.91
80189--80237
3
16.3
3
100
0
98
34
0
0
65
0.93
81318--81347
2
15.0
2
100
0
60
50
0
0
50
1.00
82150--82194
23
2.0
23
86
0
63
57
0
4
37
1.19
83762--83810
19
2.9
16
83
16
71
8
24
18
48
1.75
84205--84375
85
2.0
85
100
0
342
43
16
21
18
1.88
86289--86321
16
2.0
17
88
5
50
39
3
6
51
1.42
89412--89463
26
2.0
25
85
10
70
11
9
5
73
1.25

Tables:   1

The End!