Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005736.1 Hibiscus syriacus cultivar Beakdansim tig00013411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121025

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2339--2371
16
2.1
16
100
0
66
39
12
18
30
1.87
4425--4472
24
2.0
25
83
4
62
12
25
12
50
1.75
6946--6979
17
2.1
16
94
5
59
47
0
23
29
1.52
7692--7728
13
2.8
13
91
0
56
29
0
51
18
1.47
11645--11690
18
2.6
18
92
0
74
47
13
6
32
1.68
11746--11787
17
2.5
17
88
0
66
45
11
11
30
1.77
12115--12167
17
3.1
17
88
0
79
41
5
15
37
1.70
12118--12186
17
3.9
18
84
5
63
42
8
11
37
1.72
18030--18115
14
6.7
13
76
12
63
27
38
0
33
1.57
18066--18115
14
3.6
14
89
2
66
26
38
0
36
1.57
18273--18303
15
2.1
15
100
0
62
12
29
0
58
1.35
25208--25232
11
2.3
11
100
0
50
28
0
0
72
0.86
27409--27455
21
2.2
20
85
14
60
82
8
8
0
0.83
27418--27447
13
2.3
13
100
0
60
80
6
13
0
0.91
27429--27466
20
1.9
20
88
0
58
78
10
10
0
0.95
40302--40357
29
1.9
29
82
13
71
71
1
16
10
1.22
46441--46561
23
5.1
23
70
24
74
30
36
4
28
1.76
46438--46570
36
3.7
36
95
1
241
29
36
5
29
1.79
46441--46561
11
10.2
11
70
23
77
30
36
4
28
1.76
46976--47008
17
1.9
17
88
11
50
78
0
18
3
0.87
46967--47011
13
3.6
12
79
8
54
77
0
20
2
0.87
50994--51098
23
4.4
23
70
23
76
29
36
4
29
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50995--51132
36
3.9
36
93
0
224
30
34
4
30
1.77
50994--51113
11
10.1
11
71
22
75
30
35
4
30
1.76
60346--60386
22
1.9
21
90
5
64
24
2
36
36
1.69
63877--63925
22
2.2
22
96
0
89
20
8
32
38
1.82
69613--69674
10
6.2
9
77
18
61
1
16
3
79
0.95
69624--69675
18
2.8
19
82
11
63
1
15
5
76
1.05
69974--70014
22
1.9
21
90
5
64
24
2
36
36
1.69
74140--74212
18
3.9
19
76
16
64
9
9
4
76
1.13
84256--84307
20
2.6
20
74
17
54
3
13
3
78
1.02
85300--85341
15
2.7
15
85
3
57
23
21
23
30
1.99
88841--88901
10
6.2
9
76
16
59
3
14
1
80
0.92
88838--88901
19
3.4
18
81
16
69
3
15
1
79
0.93
88837--88901
27
2.3
27
74
25
64
3
15
1
80
0.92
89201--89241
22
1.9
21
90
5
64
24
2
36
36
1.69
90485--90527
15
2.8
16
80
16
54
55
4
6
32
1.47
97444--97493
2
25.0
2
100
0
100
50
0
0
50
1.00
98018--98157
17
8.1
17
78
3
127
37
14
7
41
1.73
109358--109397
17
2.4
17
86
0
53
32
20
25
22
1.98
110842--110880
15
2.5
15
87
4
51
66
5
12
15
1.41
115137--115194
18
3.3
18
78
11
66
0
10
10
79
0.94
115136--115196
20
3.3
20
73
21
69
0
9
9
80
0.91
115147--115205
10
5.5
10
74
21
57
0
6
8
84
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115149--115188
15
2.6
15
96
4
71
0
10
7
82
0.84
117733--117776
22
2.0
22
81
4
52
15
13
6
63
1.49
117859--117909
25
2.0
25
100
0
102
21
15
19
43
1.88

Tables:   1

The End!