genome.fa.s5738.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005738.1 Hibiscus syriacus cultivar Beakdansim tig00013415_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62705

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
801--1042	125	1.9	128	88	3	373	35	13	15	35	1.87
1427--1502	35	2.2	35	92	0	125	35	1	23	39	1.63
1724--1804	35	2.3	36	80	6	94	48	0	0	51	1.00
1721--1915	106	1.8	106	91	6	324	43	2	3	51	1.30
1828--1903	37	2.1	37	84	0	98	44	0	0	55	0.99
3460--3501	22	1.9	22	85	9	59	52	7	11	28	1.64
5032--5083	23	2.3	23	82	0	68	40	3	0	55	1.18
5342--5395	28	1.9	28	81	7	65	53	0	5	40	1.24
6110--6162	4	13.2	4	77	0	52	28	26	1	43	1.65
8671--8786	31	3.7	32	72	16	89	25	22	16	35	1.95
8766--8811	21	2.2	21	92	0	74	15	28	21	34	1.94
8901--8980	41	2.0	41	82	9	101	42	3	1	52	1.27
9190--9241	23	2.3	23	90	6	79	42	30	9	17	1.81
12585--12620	17	2.0	19	89	10	58	38	0	5	55	1.23
14818--14864	21	2.2	21	84	0	67	23	23	14	38	1.92
14855--14950	20	4.8	20	82	7	115	37	23	16	21	1.93
14855--14964	20	5.6	20	78	7	109	36	23	15	24	1.94
15122--15158	16	2.4	15	86	8	56	27	2	0	70	1.01
15852--15898	24	2.0	24	95	0	85	27	21	17	34	1.95
16159--17113	475	2.0	474	98	0	1865	35	13	21	29	1.91
19024--19073	25	2.0	25	92	0	82	26	8	20	46	1.78
19449--19535	39	2.2	39	91	0	138	49	20	13	16	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19773--19810	20	1.9	20	94	0	67	15	18	23	42	1.89
20601--20672	21	3.5	20	74	9	63	22	20	33	23	1.97
23125--23175	22	2.3	22	93	0	84	21	13	41	23	1.89
24264--24425	80	2.0	80	89	2	245	33	14	13	38	1.86
32459--32818	175	2.1	174	90	1	560	34	14	15	35	1.88
36112--36190	39	2.0	39	95	0	140	29	15	15	40	1.87
52581--52615	17	2.1	17	94	0	61	22	5	34	37	1.78
52692--53338	223	2.9	222	89	1	1001	33	14	18	33	1.91
57365--57501	39	3.5	39	87	2	186	23	24	31	21	1.98

Tables:   1

The End!