genome.fa.s574.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000574.1 Hibiscus syriacus cultivar Beakdansim tig00001122_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105058

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22--135	21	5.5	21	88	5	160	18	32	26	22	1.97
640--736	33	2.9	34	84	4	126	54	3	3	39	1.32
1129--2108	126	7.8	128	86	6	1404	32	20	25	22	1.98
1129--2101	250	3.9	255	92	4	1605	31	20	25	22	1.98
2178--2218	8	5.2	8	82	5	57	36	29	0	34	1.58
7481--7562	41	2.0	41	97	0	155	34	10	4	50	1.59
8784--9091	106	2.9	107	82	9	364	39	12	11	37	1.79
8800--9133	108	3.1	106	79	10	340	40	12	11	35	1.80
9462--9527	21	3.5	20	64	23	52	34	10	16	37	1.83
9982--10174	99	1.9	99	88	0	287	36	9	9	43	1.71
17835--17874	19	2.1	19	100	0	80	37	10	10	42	1.72
35966--35990	3	8.3	3	100	0	50	0	32	0	68	0.90
39317--39403	29	3.0	30	89	6	142	25	33	29	11	1.91
40191--40286	30	3.2	30	94	1	149	31	27	20	20	1.98
40275--40372	31	3.2	30	76	13	108	32	17	19	30	1.95
40278--40373	32	3.0	32	78	13	117	34	17	17	30	1.94
41478--41522	21	2.1	21	87	0	63	15	24	28	31	1.96
42334--42377	23	1.9	23	90	0	70	25	22	25	27	2.00
42302--42453	83	1.9	80	88	4	223	23	30	19	26	1.98
42815--42858	21	2.1	21	91	0	70	29	0	15	54	1.42
46621--46656	19	1.9	19	88	5	56	33	5	16	44	1.71
46695--46911	49	4.3	49	95	2	362	41	0	13	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46845--46924	21	4.0	21	69	25	64	42	0	11	46	1.39
47754--47796	21	2.0	21	82	8	52	30	32	23	13	1.93
47825--47870	22	2.0	22	83	8	56	30	32	26	10	1.90
49425--49492	23	3.0	22	81	12	57	22	25	27	25	1.99
50305--50622	12	26.3	11	67	20	108	41	1	10	46	1.46
50309--50400	19	5.2	18	71	24	79	35	0	11	52	1.39
50315--50411	16	5.9	15	71	24	63	36	0	12	51	1.40
50315--50383	8	8.2	8	77	16	61	34	0	13	52	1.40
50306--50492	35	5.6	35	76	16	207	37	1	11	49	1.47
50341--50547	97	2.1	98	91	2	337	40	1	11	47	1.48
50401--50619	72	3.0	69	80	7	240	43	1	9	44	1.47
50482--50627	26	5.8	26	82	6	174	45	1	8	44	1.42
50300--50592	132	2.2	131	83	10	346	42	1	10	46	1.46
50421--50648	75	3.1	71	76	10	208	45	2	8	43	1.46
50750--50791	17	2.5	16	85	11	57	42	0	0	57	0.99
52887--52925	11	3.5	11	80	13	53	38	12	0	48	1.42
52880--52928	22	2.2	22	100	0	98	38	14	0	46	1.44
52872--52992	30	4.3	30	77	16	118	44	10	0	43	1.44
52901--52951	15	3.3	16	75	10	61	43	11	0	45	1.40
52912--52961	15	3.3	15	75	10	57	50	10	0	40	1.36
53177--53216	21	1.9	21	94	0	71	57	12	0	30	1.36
53244--53298	18	3.4	18	65	31	52	52	9	0	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53305--53364	30	2.1	28	81	12	68	43	10	0	46	1.37
53428--53492	28	2.3	29	82	10	82	46	15	1	36	1.55
54660--54740	2	40.5	2	100	0	162	50	0	0	49	1.00
57747--57797	25	2.0	26	92	3	86	29	37	11	21	1.89
57962--57991	2	15.5	2	93	6	53	50	0	0	50	1.00
58007--58055	12	4.0	12	86	2	62	10	20	48	20	1.78
58893--58925	15	2.2	15	94	0	57	45	0	0	54	0.99
63779--63856	30	2.4	32	83	12	88	42	1	0	56	1.07
63864--63901	20	1.9	20	88	0	58	21	2	7	68	1.28
65584--65683	42	2.4	42	81	3	103	22	35	18	25	1.96
65661--65733	21	3.5	21	81	7	94	19	31	23	26	1.98
66250--66356	34	3.1	34	87	0	160	54	5	2	37	1.39
66790--67154	127	2.9	127	91	2	585	34	19	22	23	1.96
76090--76162	15	4.7	15	73	15	58	39	0	0	60	0.97
76087--76165	34	2.4	34	87	8	110	39	0	0	60	0.97
76305--76358	17	3.2	17	72	0	54	31	0	3	64	1.11
77890--77937	21	2.3	21	85	0	60	25	39	12	22	1.89
77941--78034	21	4.5	21	86	5	118	17	34	26	22	1.96
78482--79238	128	5.9	128	94	0	1336	32	19	24	23	1.98
79309--79349	8	5.2	8	82	5	57	36	29	0	34	1.58
82348--82386	12	3.2	12	85	3	51	46	0	0	53	1.00
83190--83229	21	1.9	21	89	0	62	27	5	15	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87462--87644	60	3.0	60	83	1	242	38	4	22	33	1.76

Tables:   1

The End!