Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005740.1 Hibiscus syriacus cultivar Beakdansim tig00013427_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 231194
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32
Found at i:3499 original size:54 final size:54
Alignment explanation
Indices: 3435--4005 Score: 740
Period size: 54 Copynumber: 10.6 Consensus size: 54
3425 ATGTATTTAA
*
3435 TGGATGAATAACCGTTTCGACACTAAGTGTGCATTTCACGAAATTCATCCTATG
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATG
** * *
3489 TGGATGAATAACCGTTTCAACACTAAGTGTGTATTTCACGAAATTTATCCTATG
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATG
* * *
3543 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCAGGGAATTCATCATATG
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATG
* *
3597 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCAGGGAATTCATCCTATG
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATG
3651 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATG
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATG
* * *
3705 TAGAAGAATAATCGTTTCGGCACTAAGTGTGCATTTCACG-AA---ATCCTATG
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATG
* * * *
3755 TGGATGAATAATCGTTTCGGCACTAAGTGTACATTTCACGGAATTCATCCTATA
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATG
*
3809 TGGATGAATAACCGTTTCGGCACTAAGTGTACATTTCAC-AGAATTCATCCTATG
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGA-AATTCATCCTATG
* * * * * * * **
3863 TAGATGAAGAATCATTTCGGCAATAAGTGTGCATTTCATGGAATTCATAATATG
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATG
** * **
3917 TTTATGAATAACCGTTTCGGCACTAAGTGTGCATTTCA-TAGAATTCATAATATG
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGA-AATTCATCCTATG
** * * * *
3971 TTTATGAATAACCGTATGGGCACTACGAGTGCATT
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATT
4006 ATAAAGAAAT
Statistics
Matches: 465, Mismatches: 45, Indels: 14
0.89 0.09 0.03
Matches are distributed among these distances:
50 45 0.10
51 2 0.00
53 2 0.00
54 416 0.89
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (54 bp):
TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATG
Found at i:3831 original size:212 final size:214
Alignment explanation
Indices: 3435--3954 Score: 774
Period size: 212 Copynumber: 2.4 Consensus size: 214
3425 ATGTATTTAA
* *
3435 TGGATGAATAACCGTTTCGACACTAAGTGTGCATTTCACGAAATTCATCCTATGTGGATGAATAA
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTAGATGAATAA
** *
3500 CCGTTTCAACACTAAGTGTGTATTTCACGAAATTTATCCTATGTGGATGAATAACCGTTTCGGCA
66 CCGTTTCGGCACTAAGTGTGCATTTCACGAAA--TATCCTATGTGGATGAATAACCGTTTCGGCA
* * * *
3565 CTAAGTGTGCATTTCAGGGAATTCATCATATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCA
129 CTAAGTGTACATTTCACGGAATTCATCATATATGGATGAATAACCGTTTCGGCACTAAGTGTACA
**
3630 TTTCAGGGAATTCATCCTATG
194 TTTCACAGAATTCATCCTATG
*
3651 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTAGAAGAATAA
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTAGATGAATAA
* *
3716 TCGTTTCGGCACTAAGTGTGCATTTCACG-AA-ATCCTATGTGGATGAATAATCGTTTCGGCACT
66 CCGTTTCGGCACTAAGTGTGCATTTCACGAAATATCCTATGTGGATGAATAACCGTTTCGGCACT
*
3779 AAGTGTACATTTCACGGAATTCATCCTATATGGATGAATAACCGTTTCGGCACTAAGTGTACATT
131 AAGTGTACATTTCACGGAATTCATCATATATGGATGAATAACCGTTTCGGCACTAAGTGTACATT
3844 TCACAGAATTCATCCTATG
196 TCACAGAATTCATCCTATG
* * * * * * * ** **
3863 TAGATGAAGAATCATTTCGGCAATAAGTGTGCATTTCATGGAATTCATAATATGTTTATGAATAA
1 TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTAGATGAATAA
3928 CCGTTTCGGCACTAAGTGTGCATTTCA
66 CCGTTTCGGCACTAAGTGTGCATTTCA
3955 TAGAATTCAT
Statistics
Matches: 276, Mismatches: 28, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
212 187 0.68
215 2 0.01
216 87 0.32
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (214 bp):
TGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTAGATGAATAA
CCGTTTCGGCACTAAGTGTGCATTTCACGAAATATCCTATGTGGATGAATAACCGTTTCGGCACT
AAGTGTACATTTCACGGAATTCATCATATATGGATGAATAACCGTTTCGGCACTAAGTGTACATT
TCACAGAATTCATCCTATG
Found at i:3995 original size:266 final size:268
Alignment explanation
Indices: 3437--4005 Score: 784
Period size: 266 Copynumber: 2.1 Consensus size: 268
3427 GTATTTAATG
*
3437 GATGAATAACCGTTTCGACACTAAGTGTGCATTTCACGAAATTCATCCTATGTGGATGAATAACC
1 GATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAA-T-ATCCTATGTGGATGAATAACC
** * *
3502 GTTTCAACACTAAGTGTGTATTTCACGAAATTTATCCTATGTGGATGAATAACCGTTTCGGCACT
64 GTTTCAACACTAAGTGTACATTTCACGAAATTCATCCTATATGGATGAATAACCGTTTCGGCACT
* ** * * * *
3567 AAGTGTGCATTTCAGGGAATTCATCATATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATT
129 AAGTGTACATTTCACAGAATTCATCATATGTAGATGAAGAACCATTTCGGCAATAAGTGTGCATT
** *
3632 TCAGGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATTC
194 TCAGGGAATTCATAATATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCAAGAAATTC
**
3697 ATCCTATGTA
259 ATAATATGTA
* * *
3707 GAAGAATAATCGTTTCGGCACTAAGTGTGCATTTCACG-AA-ATCCTATGTGGATGAATAATCGT
1 GATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATATCCTATGTGGATGAATAACCGT
** *
3770 TTCGGCACTAAGTGTACATTTCACGGAATTCATCCTATATGGATGAATAACCGTTTCGGCACTAA
66 TTCAACACTAAGTGTACATTTCACGAAATTCATCCTATATGGATGAATAACCGTTTCGGCACTAA
* *
3835 GTGTACATTTCACAGAATTCATCCTATGTAGATGAAGAATCATTTCGGCAATAAGTGTGCATTTC
131 GTGTACATTTCACAGAATTCATCATATGTAGATGAAGAACCATTTCGGCAATAAGTGTGCATTTC
* **
3900 ATGGAATTCATAATATGTTTATGAATAACCGTTTCGGCACTAAGTGTGCATTTCATAG-AATTCA
196 AGGGAATTCATAATATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCA-AGAAATTCA
*
3964 TAATATGTT
260 TAATATGTA
* * * * *
3973 TATGAATAACCGTATGGGCACTACGAGTGCATT
1 GATGAATAACCGTTTCGGCACTAAGTGTGCATT
4006 ATAAAGAAAT
Statistics
Matches: 262, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
266 224 0.85
267 1 0.00
269 2 0.01
270 35 0.13
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (268 bp):
GATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGAAATATCCTATGTGGATGAATAACCGT
TTCAACACTAAGTGTACATTTCACGAAATTCATCCTATATGGATGAATAACCGTTTCGGCACTAA
GTGTACATTTCACAGAATTCATCATATGTAGATGAAGAACCATTTCGGCAATAAGTGTGCATTTC
AGGGAATTCATAATATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCAAGAAATTCAT
AATATGTA
Found at i:10681 original size:18 final size:19
Alignment explanation
Indices: 10658--10702 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
10648 GCGATATTGT
**
10658 TATTATTATTT-AATTAAA
1 TATTATTATTTGAAAAAAA
10676 TATTATTATTTGAAAAAAA
1 TATTATTATTTGAAAAAAA
10695 TATTATTA
1 TATTATTA
10703 GTAAATGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TATTATTATTTGAAAAAAA
Found at i:11684 original size:5 final size:5
Alignment explanation
Indices: 11674--11702 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
11664 GGTATTTTAA
11674 AATAT AATAT AATAT AATAT AATAT AATA
1 AATAT AATAT AATAT AATAT AATAT AATA
11703 ATAGTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:12597 original size:21 final size:21
Alignment explanation
Indices: 12568--12612 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
12558 TCCAAGAGGG
12568 ATGGAAAAGCAAAGTGGTGCA
1 ATGGAAAAGCAAAGTGGTGCA
* * *
12589 ATGGGAAAGCATAGTGGTGGA
1 ATGGAAAAGCAAAGTGGTGCA
12610 ATG
1 ATG
12613 AGGGAGCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.07, G:0.38, T:0.18
Consensus pattern (21 bp):
ATGGAAAAGCAAAGTGGTGCA
Found at i:13011 original size:6 final size:6
Alignment explanation
Indices: 12991--13028 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
12981 AAAATTTATA
*
12991 AATAAG AATAA- AATAAC AATAAC AATAAC AATAA- AATA
1 AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC AATA
13029 TAAATATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 9 0.29
6 22 0.71
ACGTcount: A:0.71, C:0.08, G:0.03, T:0.18
Consensus pattern (6 bp):
AATAAC
Found at i:13034 original size:17 final size:17
Alignment explanation
Indices: 12990--13028 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
12980 GAAAATTTAT
*
12990 AAATAAGAATAA-AATA
1 AAATAACAATAACAATA
13006 ACAATAACAATAACAATA
1 A-AATAACAATAACAATA
13024 AAATA
1 AAATA
13029 TAAATATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 14 0.70
18 5 0.25
ACGTcount: A:0.72, C:0.08, G:0.03, T:0.18
Consensus pattern (17 bp):
AAATAACAATAACAATA
Found at i:13040 original size:23 final size:23
Alignment explanation
Indices: 12987--13040 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
12977 TTCGAAAATT
*
12987 TATAAATAAGAATAAAATAACAA
1 TATAAATAACAATAAAATAACAA
13010 TA-ACAATAACAATAAAATATA-AA
1 TATA-AATAACAATAAAATA-ACAA
13033 TATAAATA
1 TATAAATA
13041 TTTCAATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 1 0.04
23 24 0.89
24 2 0.07
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.24
Consensus pattern (23 bp):
TATAAATAACAATAAAATAACAA
Found at i:13548 original size:34 final size:34
Alignment explanation
Indices: 13505--13570 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
13495 ATACTAAAAA
13505 ATACATAAATTATTATAAAATAAAGTTAATTACT
1 ATACATAAATTATTATAAAATAAAGTTAATTACT
* *
13539 ATACATAAATTTTTATAAAATCAAGTTAATTA
1 ATACATAAATTATTATAAAATAAAGTTAATTA
13571 AGTTAATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (34 bp):
ATACATAAATTATTATAAAATAAAGTTAATTACT
Found at i:13626 original size:20 final size:20
Alignment explanation
Indices: 13601--13639 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
13591 AATACATACA
13601 TAAATTATTATAAAATCAAG
1 TAAATTATTATAAAATCAAG
13621 TAAATTATTATAAAATCAA
1 TAAATTATTATAAAATCAA
13640 ATATATACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (20 bp):
TAAATTATTATAAAATCAAG
Found at i:13629 original size:48 final size:48
Alignment explanation
Indices: 13570--13683 Score: 201
Period size: 48 Copynumber: 2.4 Consensus size: 48
13560 CAAGTTAATT
13570 AAGTTAATTATTATAAAATCAAATACATACATAAATTATTATAAAATC
1 AAGTTAATTATTATAAAATCAAATACATACATAAATTATTATAAAATC
* * *
13618 AAGTAAATTATTATAAAATCAAATATATACTTAAATTATTATAAAATC
1 AAGTTAATTATTATAAAATCAAATACATACATAAATTATTATAAAATC
13666 AAGTTAATTATTATAAAA
1 AAGTTAATTATTATAAAA
13684 ATTTAAATAT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (48 bp):
AAGTTAATTATTATAAAATCAAATACATACATAAATTATTATAAAATC
Found at i:20023 original size:30 final size:29
Alignment explanation
Indices: 19964--20023 Score: 68
Period size: 30 Copynumber: 2.0 Consensus size: 29
19954 TCTATGTCAT
**
19964 TTCATATAACATGTAATACATATTGCATA
1 TTCATATAACATGTAATACATATCACATA
*
19993 TTCATATAAGCATGT-ATATCATGTCACATA
1 TTCATATAA-CATGTAATA-CATATCACATA
20023 T
1 T
20024 AATATACTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (29 bp):
TTCATATAACATGTAATACATATCACATA
Found at i:26486 original size:20 final size:21
Alignment explanation
Indices: 26456--26495 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
26446 AGCCGTTGGG
26456 GCCTAATGGTATCGATACTAT
1 GCCTAATGGTATCGATACTAT
*
26477 GCCT-ATGGTATTGATACTA
1 GCCTAATGGTATCGATACTA
26496 CCATGTAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (21 bp):
GCCTAATGGTATCGATACTAT
Found at i:41498 original size:35 final size:35
Alignment explanation
Indices: 41442--41538 Score: 149
Period size: 35 Copynumber: 2.8 Consensus size: 35
41432 TGTCATCTCA
* * *
41442 TAATGCACTATTTTAGCAACTTTTCAGTGGTCAAT
1 TAATGCACCATTTCAGTAACTTTTCAGTGGTCAAT
41477 TAATGCACCATTTCAGTAACTTTTCAGTGGTCAAT
1 TAATGCACCATTTCAGTAACTTTTCAGTGGTCAAT
* *
41512 TAATGCACCATTTCAATACCTTTTCAG
1 TAATGCACCATTTCAGTAACTTTTCAG
41539 AAAACTTTTA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 57 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (35 bp):
TAATGCACCATTTCAGTAACTTTTCAGTGGTCAAT
Found at i:53995 original size:11 final size:11
Alignment explanation
Indices: 53979--54017 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
53969 CCAACAAACC
*
53979 ATAACAGACTA
1 ATAACAAACTA
53990 ATAACAAACTA
1 ATAACAAACTA
54001 ATAACAAACTA
1 ATAACAAACTA
*
54012 CTAACA
1 ATAACA
54018 CTCTAACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.59, C:0.21, G:0.03, T:0.18
Consensus pattern (11 bp):
ATAACAAACTA
Found at i:54023 original size:22 final size:22
Alignment explanation
Indices: 53971--54017 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
53961 TCAAGTAACC
* *
53971 AACAAAC-CATAACAGACTAAT
1 AACAAACTAATAACAAACTAAT
*
53992 AACAAACTAATAACAAACTACT
1 AACAAACTAATAACAAACTAAT
54014 AACA
1 AACA
54018 CTCTAACATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.60, C:0.23, G:0.02, T:0.15
Consensus pattern (22 bp):
AACAAACTAATAACAAACTAAT
Found at i:55894 original size:2 final size:2
Alignment explanation
Indices: 55887--55914 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
55877 ATCATGATAA
55887 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
55915 CACTCTCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57893 original size:29 final size:27
Alignment explanation
Indices: 57828--57902 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 27
57818 GAACCTGACT
* *
57828 ATGTGTTTTTATTTATTTTAATTCGGCC
1 ATGTG-TTTTATTTATTTTAATTAGCCC
57856 ATGTAGTTTTAATTTATTTTAATTTAGTCCC
1 ATGT-GTTTT-ATTTATTTTAA-TTAG-CCC
57887 AT-TGTTTTATTTATTT
1 ATGTGTTTTATTTATTT
57903 CCATTATTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
28 16 0.39
29 17 0.41
30 4 0.10
31 4 0.10
ACGTcount: A:0.21, C:0.08, G:0.11, T:0.60
Consensus pattern (27 bp):
ATGTGTTTTATTTATTTTAATTAGCCC
Found at i:58710 original size:131 final size:131
Alignment explanation
Indices: 58562--58871 Score: 408
Period size: 131 Copynumber: 2.4 Consensus size: 131
58552 AAGGCATAAG
* * * * * *
58562 AGGTCATTTATTATCGATTGAAAATAATTTGATATTATCGTTTTC-TTTCGAATTAATATCT-AT
1 AGGTCATTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACTT-GAATCAATAT-TGAA
* * * *
58625 TTTTTAGACGGAATATTAATATCTATTTATTTCAATTGGAGTAATAAATGACTGTTTTAATGCAC
64 TTTTAAGACGAAATAGTAATATCTATTTATTCCAATTGGAGTAATAAATGACTGTTTTAATGCAC
58690 GAA
129 GAA
* * * ** *
58693 AGGTCGTTTATTCTCGATTGGAAATCATTAAATATTATTATTTTCACTTGAATCGATATTGAATT
1 AGGTCATTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACTTGAATCAATATTGAATT
* * *
58758 TTAAGATGAAATAGTAATATCTCTTTATTCCAATTGGAGTAATAAATGATTGTTTTAATGCACGA
66 TTAAGACGAAATAGTAATATCTATTTATTCCAATTGGAGTAATAAATGACTGTTTTAATGCACGA
58823 A
131 A
*
58824 AGCTCATTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACT
1 AGGTCATTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACT
58872 CTTAAAATTA
Statistics
Matches: 152, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
130 1 0.01
131 149 0.98
132 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (131 bp):
AGGTCATTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACTTGAATCAATATTGAATT
TTAAGACGAAATAGTAATATCTATTTATTCCAATTGGAGTAATAAATGACTGTTTTAATGCACGA
A
Found at i:63078 original size:19 final size:20
Alignment explanation
Indices: 63049--63086 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
63039 CAAAATTTGT
63049 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCGATGCATA
63069 TGAA-GTGCATCGATGCAT
1 TGAAGGTGCATCGATGCAT
63087 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCGATGCATA
Found at i:63130 original size:63 final size:62
Alignment explanation
Indices: 63054--63209 Score: 188
Period size: 63 Copynumber: 2.5 Consensus size: 62
63044 TTTGTTGAAG
* * * *
63054 GTGCATCGATGCATATGAAGTGCATCGATGCATTAAT-TTAAATACAAACATCGAATGTCGTCA
1 GTGCATCGATGCATA-GGAGTGCATCGATGCATTAATAATAAA-ACAAACATCGAATGCCCTCA
** **
63117 GTGCATCGATGCATAAGGAGTGCATCGATGCATTTCTAATAAAATGAACATCGAATGCCCTCA
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
*
63180 ATGCATCGATGCATCAGGAGTGCATCGATG
1 GTGCATCGATGCAT-AGGAGTGCATCGATG
63210 TATGCCTCCA
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
63 76 0.94
64 5 0.06
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (62 bp):
GTGCATCGATGCATAGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
Found at i:63979 original size:149 final size:149
Alignment explanation
Indices: 63665--63968 Score: 599
Period size: 149 Copynumber: 2.0 Consensus size: 149
63655 GGGTAGAGGG
63665 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
63730 ACTTGATCCCTAGTATATGTATATGATTATTAAGGAATGATATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGTATATGTATATGATTATTAAGGAATGATATGTGGTCCTTATGGACATTATTA
63795 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
63814 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
*
63879 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGTATATGTATATGATTATTAAGGAATGATATGTGGTCCTTATGGACATTATTA
63944 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
63963 TCTACG
1 TCTACG
63969 TGGCACTTCG
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 154 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
ACTTGATCCCTAGTATATGTATATGATTATTAAGGAATGATATGTGGTCCTTATGGACATTATTA
TATGGCACTACGGTGCAAT
Found at i:63980 original size:23 final size:23
Alignment explanation
Indices: 63946--63991 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
63936 CATTATTATA
*
63946 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTATACG
*
63969 TGGCACTTCGGTGCAATTATACG
1 TGGCACTACGGTGCAATTATACG
63992 AGCTGTGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTATACG
Found at i:70083 original size:19 final size:20
Alignment explanation
Indices: 70054--70091 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
70044 AAAAATTTGT
70054 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCGATGCATA
70074 TGAA-GTGCATCGATGCAT
1 TGAAGGTGCATCGATGCAT
70092 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCGATGCATA
Found at i:70144 original size:63 final size:63
Alignment explanation
Indices: 70059--70217 Score: 212
Period size: 63 Copynumber: 2.5 Consensus size: 63
70049 TTTGTTGAAG
* * * * *
70059 GTGCATCGATGCATATGAAGTGCATCGATGCATTAAT-TTAAATACAAACATCGAATGTCGTCA
1 GTGCATCGATGCATAAGGAGTGCATCGATGCATTAATAATAAA-ACAAACATCGAATGCCCTCA
** **
70122 GTGCATCGATGCATAAGGAGTGCATCGATGCATTTCTAATAAAATGAACATCGAATGCCCTCA
1 GTGCATCGATGCATAAGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
*
70185 GTGCATCGATGCATCAGGAGTGCATCGATGCAT
1 GTGCATCGATGCATAAGGAGTGCATCGATGCAT
70218 GCCTCTATTA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
63 81 0.95
64 4 0.05
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (63 bp):
GTGCATCGATGCATAAGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
Found at i:70986 original size:149 final size:149
Alignment explanation
Indices: 70672--70975 Score: 554
Period size: 149 Copynumber: 2.0 Consensus size: 149
70662 GGGTAGAGGG
70672 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
* *
70737 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATTGACATTATTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATATGGTCCTTATGGACATTATTA
*
70802 TATGGCATTACGGTACAAT
131 TATGGCACTACGGTACAAT
* *
70821 TCTACGCGGTCCTTCGGGCTATATATATATTCTGTGGAACATGTGTGATGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
70886 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATATGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATATGGTCCTTATGGACATTATTA
*
70951 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTACAAT
70970 TCTACG
1 TCTACG
70976 TGGCACTTCG
Statistics
Matches: 149, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATATGGTCCTTATGGACATTATTA
TATGGCACTACGGTACAAT
Found at i:70987 original size:23 final size:23
Alignment explanation
Indices: 70953--70998 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
70943 CATTATTATA
*
70953 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTATACG
*
70976 TGGCACTTCGGTGCAATTATACG
1 TGGCACTACGGTGCAATTATACG
70999 AGCTGTGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTATACG
Found at i:71674 original size:17 final size:16
Alignment explanation
Indices: 71624--71718 Score: 72
Period size: 15 Copynumber: 6.1 Consensus size: 16
71614 AAAGAGTGTG
* * *
71624 AAAAGATAGATAAACA
1 AAAAGAAAGAGAAAAA
71640 AAAAGAAA-A-AACAAA
1 AAAAGAAAGAGAA-AAA
*
71655 AAAATAATAGAGAAAAA
1 AAAAGAA-AGAGAAAAA
* *
71672 AAAAGAAAAAGGAAAA
1 AAAAGAAAGAGAAAAA
* *
71688 AAGAGAAA-AGAGAAA
1 AAAAGAAAGAGAAAAA
71703 AAAAGAAA-AGAAAAA
1 AAAAGAAAGAGAAAAA
71718 A
1 A
71719 TAGGAAAAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
14 2 0.03
15 28 0.44
16 22 0.34
17 10 0.16
18 2 0.03
ACGTcount: A:0.79, C:0.02, G:0.15, T:0.04
Consensus pattern (16 bp):
AAAAGAAAGAGAAAAA
Found at i:71686 original size:7 final size:7
Alignment explanation
Indices: 71639--71786 Score: 81
Period size: 7 Copynumber: 20.7 Consensus size: 7
71629 ATAGATAAAC
71639 AAAAAGA
1 AAAAAGA
*
71646 AAAAACA
1 AAAAAGA
71653 AAAAA-A
1 AAAAAGA
* *
71659 TAATAG-
1 AAAAAGA
*
71665 AGAAA-A
1 AAAAAGA
71671 AAAAAGA
1 AAAAAGA
*
71678 AAAAGGA
1 AAAAAGA
71685 AAAAAGA
1 AAAAAGA
71692 GAAAAGAGAA
1 -AAAA-AG-A
71702 AAAAAGA
1 AAAAAGA
71709 AAAGAA-A
1 AAA-AAGA
*
71716 AAATAGGA
1 AAA-AAGA
71724 AAAAAGA
1 AAAAAGA
71731 AGAAAAGA
1 A-AAAAGA
** *
71739 TGAGAG-
1 AAAAAGA
71745 AAAAAGA
1 AAAAAGA
71752 GAAAAAGA
1 -AAAAAGA
*
71760 AAAAGAGG
1 AAAA-AGA
**
71768 ATGAAGA
1 AAAAAGA
71775 AAAAAGA
1 AAAAAGA
71782 AAAAA
1 AAAAA
71787 AGAGAAAAAA
Statistics
Matches: 105, Mismatches: 24, Indels: 24
0.69 0.16 0.16
Matches are distributed among these distances:
6 13 0.12
7 56 0.53
8 29 0.28
9 6 0.06
10 1 0.01
ACGTcount: A:0.76, C:0.01, G:0.20, T:0.03
Consensus pattern (7 bp):
AAAAAGA
Found at i:71688 original size:30 final size:28
Alignment explanation
Indices: 71654--71762 Score: 73
Period size: 29 Copynumber: 3.8 Consensus size: 28
71644 GAAAAAACAA
71654 AAAAATAATAGAGAAAAAAAAAGAAAAAG
1 AAAAA-AATAGAGAAAAAAAAAGAAAAAG
* * *
71683 GAAAAAAGAGA-AAAGAGAAAAAAAGAAAAG
1 AAAAAAATAGAGAAA-A-AAAAAGA-AAAAG
*
71713 -AAAAAATAG-GAAAAAAGAAGAAAAGATG
1 AAAAAAATAGAGAAAAAAAAAGAAAA-A-G
*
71741 AGAGAAAA-AGAGAAAAAGAAAA
1 A-AAAAAATAGAGAAAAA-AAAA
71763 AGAGGATGAA
Statistics
Matches: 62, Mismatches: 8, Indels: 18
0.70 0.09 0.20
Matches are distributed among these distances:
26 3 0.05
27 9 0.15
28 8 0.13
29 23 0.37
30 16 0.26
31 3 0.05
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (28 bp):
AAAAAAATAGAGAAAAAAAAAGAAAAAG
Found at i:71688 original size:32 final size:33
Alignment explanation
Indices: 71629--71706 Score: 95
Period size: 32 Copynumber: 2.4 Consensus size: 33
71619 GTGTGAAAAG
* * *
71629 ATAGATAAACAAAAAGAAAAAACAAAAAA-ATA
1 ATAGAGAAAAAAAAAGAAAAAACAAAAAAGAGA
**
71661 ATAGAGAAAAAAAAAGAAAAAGGAAAAAAGAGA
1 ATAGAGAAAAAAAAAGAAAAAACAAAAAAGAGA
*
71694 AAAGAGAAAAAAA
1 ATAGAGAAAAAAA
71707 GAAAAGAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
32 25 0.64
33 14 0.36
ACGTcount: A:0.78, C:0.03, G:0.14, T:0.05
Consensus pattern (33 bp):
ATAGAGAAAAAAAAAGAAAAAACAAAAAAGAGA
Found at i:71690 original size:46 final size:46
Alignment explanation
Indices: 71639--71794 Score: 120
Period size: 46 Copynumber: 3.3 Consensus size: 46
71629 ATAGATAAAC
* *
71639 AAAAAGA-AAAA-ACAAAAAAATAATAGAGAAAAAAAAAGAAAAAGGA
1 AAAAAGAGAAAAGACAAAAAAAGAA-A-AGAAAAAAAAAGAAAAAAGA
* * *
71685 AAAAAGAGAAAAGAGAAAAAAAGAAAAGAAAAAATAGGAAAAAAGA
1 AAAAAGAGAAAAGACAAAAAAAGAAAAGAAAAAAAAAGAAAAAAGA
* ** * *
71731 AGAAA-AGATGAGAGAAAAAGAGAAAAAGAAAAAGAGGATGAAGAAAAAAGAA
1 AAAAAGAGAAAAGACAAAAAAAG-AAAAGAAAAA-A--A--AAGAAAAAAG-A
71783 AAAAAGAGAAAA
1 AAAAAGAGAAAA
71795 AAATCAAGTA
Statistics
Matches: 86, Mismatches: 14, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
45 14 0.16
46 38 0.44
47 6 0.07
48 10 0.12
51 9 0.10
52 5 0.06
53 4 0.05
ACGTcount: A:0.76, C:0.01, G:0.20, T:0.03
Consensus pattern (46 bp):
AAAAAGAGAAAAGACAAAAAAAGAAAAGAAAAAAAAAGAAAAAAGA
Found at i:71763 original size:15 final size:15
Alignment explanation
Indices: 71668--71795 Score: 88
Period size: 16 Copynumber: 8.4 Consensus size: 15
71658 ATAATAGAGA
*
71668 AAAAAAAAGAAAAAGG
1 AAAAAAGAGAAAAA-G
71684 AAAAAAGAGAAAAGAG
1 AAAAAAGAGAAAA-AG
71700 AAAAAA-AG-AAAAG
1 AAAAAAGAGAAAAAG
*
71713 AAAAAATAGGAAAAAAG
1 AAAAAAGA-G-AAAAAG
*
71730 AAGAAAAGATG--AGAG
1 AA-AAAAGA-GAAAAAG
71745 -AAAAAGAGAAAAAG
1 AAAAAAGAGAAAAAG
**
71759 -AAAAAGAGGATGAAG
1 AAAAAAGA-GAAAAAG
*
71774 AAAAAAGAAAAAAAG
1 AAAAAAGAGAAAAAG
71789 AGAAAAA
1 A-AAAAA
71796 AATCAAGTAT
Statistics
Matches: 91, Mismatches: 10, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
12 1 0.01
13 14 0.15
14 15 0.16
15 16 0.18
16 31 0.34
17 8 0.09
18 6 0.07
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (15 bp):
AAAAAAGAGAAAAAG
Found at i:71771 original size:30 final size:28
Alignment explanation
Indices: 71724--71795 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 28
71714 AAAAATAGGA
71724 AAAAAGAAGAAAAGATGAGAGAAAAAGAG
1 AAAAAGAA-AAAAGATGAGAGAAAAAGAG
*
71753 AAAAAGAAAAAGAGGATGA-AGAAAAAAGAA
1 AAAAAGAAAAA-A-GATGAGAG-AAAAAGAG
71783 AAAAAGAGAAAAA
1 AAAAAGA-AAAAA
71796 AATCAAGTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
28 3 0.08
29 11 0.29
30 20 0.53
31 4 0.11
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.03
Consensus pattern (28 bp):
AAAAAGAAAAAAGATGAGAGAAAAAGAG
Found at i:71775 original size:29 final size:28
Alignment explanation
Indices: 71724--71789 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
71714 AAAAATAGGA
71724 AAAAAGAAGAAAAGATGAGAGAAAAAGAG
1 AAAAAGAAGAAAAGATGAGAGAAAAA-AG
71753 AAAAAGAA-AAAGAGGATGA-AGAAAAAAG
1 AAAAAGAAGAAA-A-GATGAGAGAAAAAAG
71781 AAAAA-AAGA
1 AAAAAGAAGA
71790 GAAAAAAATC
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
27 2 0.06
28 11 0.32
29 16 0.47
30 5 0.15
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (28 bp):
AAAAAGAAGAAAAGATGAGAGAAAAAAG
Found at i:71795 original size:8 final size:8
Alignment explanation
Indices: 71669--71795 Score: 76
Period size: 8 Copynumber: 16.6 Consensus size: 8
71659 TAATAGAGAA
*
71669 AAAAAAAG
1 AAAAAGAG
71677 AAAAAG-G
1 AAAAAGAG
71684 AAAAA-AG
1 AAAAAGAG
71691 AGAAAAGAG
1 A-AAAAGAG
*
71700 AAAAAAAG
1 AAAAAGAG
71708 -AAAAGA-
1 AAAAAGAG
*
71714 AAAAATAGG
1 AAAAAGA-G
71723 AAAAA-AG
1 AAAAAGAG
71730 AAGAAA-AG
1 AA-AAAGAG
**
71738 -ATGAGAG
1 AAAAAGAG
71745 AAAAAGAG
1 AAAAAGAG
71753 -AAAA-AG
1 AAAAAGAG
71759 AAAAAGAGG
1 AAAAAGA-G
**
71768 ATGAAGA-
1 AAAAAGAG
*
71775 AAAAAGAA
1 AAAAAGAG
71783 AAAAAGAG
1 AAAAAGAG
71791 AAAAA
1 AAAAA
71796 AATCAAGTAT
Statistics
Matches: 93, Mismatches: 13, Indels: 26
0.70 0.10 0.20
Matches are distributed among these distances:
6 3 0.03
7 37 0.40
8 39 0.42
9 14 0.15
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (8 bp):
AAAAAGAG
Found at i:75237 original size:322 final size:322
Alignment explanation
Indices: 74652--75295 Score: 1209
Period size: 322 Copynumber: 2.0 Consensus size: 322
74642 ATATTCTAGA
*
74652 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGCTTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCATCCAAGGCTTGG
74717 AAGACTGTCTATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGGATGT
66 AAGACTGTCTATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGGATGT
* *
74782 TCCCTTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATTCCTTGAAT
131 TCCCTTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAAT
*
74847 GTGTGAATTAAGTATCCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTT
196 GTGTGAATTAAGTATCCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTT
*
74912 TAAACTCATCCAAATCATCCATGCATAAATCTCCCGTAACAAAATTCCAGCCTGCACTGTCT
261 TAAACTCATCCAAATCATCCATGCATAAATCTCCCATAACAAAATTCCAGCCTGCACTGTCT
*
74974 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTTATCCAAGGCTTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCATCCAAGGCTTGG
*
75039 AAGACTGTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGGATGT
66 AAGACTGTCTATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGGATGT
75104 TCCCTTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAAT
131 TCCCTTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAAT
75169 GTGTGAATTAAG-AGTCCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGT
196 GTGTGAATTAAGTA-TCCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGT
75233 TTAAACTCATCCAAATCATCCATGCATAAATCTCCCATAACAAAATTCCAGCCTGCACTGTCT
260 TTAAACTCATCCAAATCATCCATGCATAAATCTCCCATAACAAAATTCCAGCCTGCACTGTCT
75296 CCAATAAATC
Statistics
Matches: 314, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
321 1 0.00
322 313 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (322 bp):
TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCATCCAAGGCTTGG
AAGACTGTCTATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGGATGT
TCCCTTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAAT
GTGTGAATTAAGTATCCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTT
TAAACTCATCCAAATCATCCATGCATAAATCTCCCATAACAAAATTCCAGCCTGCACTGTCT
Found at i:76739 original size:811 final size:810
Alignment explanation
Indices: 74974--79957 Score: 7446
Period size: 811 Copynumber: 6.2 Consensus size: 810
74964 TGCACTGTCT
** **
74974 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTTATCCAAGGCTTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* *
75039 AAGACTGTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGGATG-
66 AAGACTCTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
* *
75103 TTCCCTTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAA
131 TT--CTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAA
* *
75168 TGTGTGAATTAAGAGTCCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGT
194 TGTGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGT
* * *
75233 TTAAACTCATCCAAATCATCCATGCAT-AAATCTCCCATAACAAAATTCCAGCCTGCACTGTCTC
259 TCAAACTCATCCAAATCATCCATGCATAAAAT-TCCCGTAACAAAATTCCAGCCTGCACTGTCTT
* * *
75297 CAATAAATCGATCATA--T--A--T--C---A-C--ATTGAGGTTATTTAAAAGGAATTGGAAAG
323 CAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAG
* * * * * * * *
75348 CTAAAAGATAGAGGAATAATTCCCAATTGATTTATGGAAGCAATCATGCCTTTATCACATCCAGA
388 ATAAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGA
* * * ** *
75413 ATTTGGAGACATTCTG-CTGATATTCTTGCATATGATGAAACCGTTCAATAAACGTGACCCACAA
453 ATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTA
* * ** * *
75477 ACTATAAATGATGAGCTAGGAACCAATGCTATAAAAAAAATGAAATGAAGACTACAAGACTATCT
518 GCTATATATGATGAGCTAGGAACCAACACTAT-AACAAAAGGAAATGAAGACTACAAGACTATCT
* *
75542 TGAAGCCGATAAAATTCTAAAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATG-TTT-TATAT
582 TGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTATATAT
* * * * * * *
75605 ATTCAAAACGTGTATATACAAATAATTCCAAAGGTTCCTATTTATAATATTTCTAAGCAGCATAT
647 ATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACATAT
* *
75670 GAAAAGACTCAAAAGATGAAAAATTCTCATTAATTTAGCAATAAAATGCACTTGAATGCTTTGTT
712 GAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTC
*
75735 TTTATTATCTTCAAGGTTGGCTGAATATTCTAAA
777 TTTATTATCTTCAAGGTTGGCTGAATATTCTAGA
* * * *
75769 TCATTTTCGTGATGAATCTAGAGAATTTGAAGCTTAATTTGGTCTTAATTTCGTCCAAGGGGTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
*
75834 AAGACTCTTGCTATTCCTTGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
66 AAGACTC-T-CTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* *
75899 GTTTCCTTGAAGAATATGAACAACCCTTGACTTTGGATGATAACAATCATCTTTGAATGCCTTGA
129 GCTT-CTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGA
* * * *
75964 ATATGTGAATTAAGAGTCCTTCAAAGGCTTGTCACTTGGCTGAATTTGAAAAGACACTCCCTTGG
193 ATGTGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGG
76029 TTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTT
258 TTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTT
** * * *
76094 CAATAAATCGATCATATCTCAAGCTCCTAATATCGGATTGAGGTTATTGAAACGGCATTGGAAAG
323 CAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAG
* * * **
76159 ATAAGAGCTAGATGAATAATTACCAATTGATTTCTGGAGCCAAACATGTCTGTATGGCATCCAGA
388 ATAAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGA
*
76224 ATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTA
453 ATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTA
* *
76289 GCTATATTTGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTAGAAGACTATCTT
518 GCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTT
* *
76354 GAAGCCGATAAATTTCTACAAGAGAACAAGAATGAAAGAAACATCTCAAAGATGTTATATATATA
583 GAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTT-T-TATATA
*
76419 TATTCAAAATGTGTATCTACAAATGATCCCAAAGGTG-CTATTTATAGTATTTCTAAGCAGCATA
646 TATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACATA
* *
76483 TGAAAAGAGTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATTCTTTGT
711 TGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGT
* ** *
76548 CTTTCTTATCTTCAAGGTTGATTGAATATTCTATA
776 CTTTATTATCTTCAAGGTTGGCTGAATATTCTAGA
* * *
76583 TCATTTTGGGGATAAATCTATACAATTTGAAGCTTAATTTGGCCTTATTTTCGTCCAAGGGGTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * * *
76648 AAGACTCTCTATTCCATGTTGAAAGTTGTCTTAATAAGTGAATTAAATCACCCTTCGTTGCAAGC
66 AAGACTCTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
* *
76713 TTCTTCAAGAATATGAACAACCCTTGACATTAGATGATAACAATCATCTTTGAATGCCTTGAATG
131 TTCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATG
* *
76778 TATGAATTAAGAGTCCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTC
196 TGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTC
*
76843 AAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACGGTCTTCAA
261 AAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAA
76908 TAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATA
326 TAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATA
* * * * *
76973 AGAGAAAGATTAATAATTCCCAATTGATTTCTGAAACCAAACATGTCTATATCACATCTAGAATC
391 AGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGAATC
* * *
77038 TGAATACATTCTGACTGATATTCTAGCATATGATGAAACCGTTCAACGAACGTGACCCACTAGCT
456 TGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCT
* *
77103 ATATATGATGAGCTAGGAACTAACACTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAA
521 ATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAA
*
77168 GCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATATTC
586 GCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTATATATATTC
* *
77233 AAAATGTGTATCTACAAATGATCACAAAGGTGCCTATTTATAGTATGTCTAAGCAACATATGAAA
651 AAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACATATGAAA
* ** *
77298 AGACTCAAAAGATG-AAAATTCTCATCAATTTGGGGATAAAATGCACTTGAATGCTTTGTTTTTA
716 AGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTA
77362 TTATCTTCAAGGTTGGCTGAATATTCTAGA
781 TTATCTTCAAGGTTGGCTGAATATTCTAGA
* * *
77392 TCATTTTGGGGATTAATCTAGAGAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTAG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * *
77457 AAGATTCTTTCTATTCCTTGCTGAAAATTGTCTTAATAAGTGAATTAAATCTCCCTTCATTGCAT
66 AAGA--CTCTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
*
77522 GCTTCCTTGAAGAATATGAACAACCCTTGACTTTGGATGATAACAATCATCTTTGAATGCCTTGA
129 GCTT-CTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGA
* *
77587 ATGTGTGAATTAAGAGTCCTTCAAAGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGG
193 ATGTGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGG
*
77652 TTCAAACTCATCCAAATCATCCATGCATAAAACTCCCGTAACAAAATTCCAGCCTGCACTGTCTT
258 TTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTT
* * *
77717 CAATAAATCGATCATATCTTAAGCTCCCGTTATC-GATTGAGGTGATTCAAAAGGCATTAGAAAG
323 CAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAG
* * *
77781 ATAAGAGATAGTTGAATAATTCCCAAGTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGA
388 ATAAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGA
* * *
77846 ATCTGAAGACATTCTGACTGATATTCTTGCATTTGATGAAACCGTTCAACGAAAGTGAACCACTA
453 ATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTA
* * * * * *
77911 TCTCTATTTGATGAGCTAGGAACCAACACTATATA-AAAAGGAAATCAAGAATACAAGACAATCT
518 GCTATATATGATGAGCTAGGAACCAACACTATA-ACAAAAGGAAATGAAGACTACAAGACTATCT
77975 TGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTATATATAT
582 TGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATG-T-T-T-TAT
*
78040 ATATATTCAAAATGTGTATCTACAAATGATCCCAAAGGAG-CTATTTATAGTATTTCTAAGCAAC
643 ATATATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAAC
*
78104 AT-TGAAAAGACTCAAAAGATGAAAATTTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTT
708 ATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTT
* *
78168 TGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGG
773 TGTCTTTATTATCTTCAAGGTTGGCTGAATATTCTAGA
*
78206 TCATTTTGGGGATGAATCTAGACAATTTGAAG-TTAATTTGGCCTTATTTTCGTCCAAGGGGTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
78270 AAGACTCTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
66 AAGACTCTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
* * * *
78335 TCCCTTCAAGAATATGAACAACCCTTGACATTCGATGATAACAATCATCTTTGAATGCCTTGAAT
131 T-TCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAAT
* * * *
78400 GTATGAATTAAGAGTCCTT-AAATGGATTCTCACTTGGCTAAAGTTGAAAAGTCTCTCCCTTGGT
195 GTGTGAATTAAGAGTCCTTCAAA-GGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGT
*
78464 TCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTT
259 TCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTC
* *
78529 AATAAATCGAACATATCTCAAGCTCCCGATATTGGATTGAGGTGATTCAAAAGGCATTGGAAAGA
324 AATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGA
* * *
78594 TAAGAGATAGGTGAATAATTCCCAATTGATTTCTGAAACCAAACATGTCTGTATCACATCTAGAA
389 TAAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGAA
* * * * *
78659 TCTGAATACATTCTGACTGAAATTGTTTCATCTGATGAAACCGTTCAACGAACAT-AGCCCACTA
454 TCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGA-CCCACTA
**
78723 GCTATATATGATGAGCTAGGAATTAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTT
518 GCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTT
* * * * * *
78788 GAAGTCGATAAAGTTCTACAAGAGAGCAAGAATGAAAGCAACCTCTTAATGATTTTTTATATATA
583 GAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTATATATA
* * * * *
78853 TTCAAAATGTGTATCTACAATTGATCTCAAATGTGCCTATTTACAGTATTTCTAAGAAACATATG
648 TTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACATATG
78918 AAAAGACTCAAAAGATG-AAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCT
713 AAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCT
* *
78982 TTCTTATCTTCAAGGTTGGATGAATATTCTAGA
778 TTATTATCTTCAAGGTTGGCTGAATATTCTAGA
* **
79015 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTCCGTCCAAGGCTTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * *
79080 AAGACTGTCTATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGGATGC
66 AAGACTCTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
* * * *
79145 TCCCTTAAAGAATATGAACAACCCTTGACTTTACATGATAACAATAATCTTTGAATGCCTTGAAT
131 T-TCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAAT
* * * *
79210 GTGTGAATTAAGAGTTCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAACACTATCCCTTGGTT
195 GTGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGG-T
* * * *
79275 TC-AACTCATCCAAGTCATCCATTCAT-AAATCTCCCGTAACTAAATTCCAGCCTGCTCTGTCTT
259 TCAAACTCATCCAAATCATCCATGCATAAAAT-TCCCGTAACAAAATTCCAGCCTGCACTGTCTT
* * * * * * * *
79338 CAATAAATCGACCAGATCTCAAGTTCTCGATATCGCATTGAGGTTATTTAAAAGGAATTGGAAAG
323 CAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAG
* * * * * * * * *
79403 CTAAGAGATAGAGGAATAATTCCCAAATGATTTCTGGAAGCAATCATGCCTTTATCACATACAAA
388 ATAAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGA
* *
79468 ATTTGAAGACATTCT-ACTGATATTCTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTA
453 ATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTA
* ** *
79532 ACTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGATTATCTT
518 GCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTT
79597 GAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAA-ACAACCTCTCAAAGATG-TTT-TATAT
583 GAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGA-AACCTCTCAAAGATGTTTTATATAT
* * *
79659 ATTCAAAACGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATAT
647 ATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACATAT
* * *
79724 GAAAGGATTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTT
712 GAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTC
79789 TTTATTATCTTCAAGGTTGGCTGAATATTCTAGA
777 TTTATTATCTTCAAGGTTGGCTGAATATTCTAGA
* *
79823 TCATTTTGGGGATGAATCTAGAGAATTTGAAGCTGAATTTGGCCTTAATTTCGTCCAAGGGGTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * * *
79888 AAAACTCTTGCTATTCCTTACTGAAAATTGTCTTAATAAGTGAATTAAAGCACCCTTCATTGCAT
66 AAGACTC-T-CTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
79953 GCTTC
129 GCTTC
79958 ACTACAAGAA
Statistics
Matches: 3800, Mismatches: 340, Indels: 84
0.90 0.08 0.02
Matches are distributed among these distances:
795 63 0.02
796 1 0.00
797 244 0.06
798 6 0.00
799 1 0.00
801 1 0.00
803 1 0.00
807 78 0.02
808 185 0.05
809 466 0.12
810 496 0.13
811 1226 0.32
812 586 0.15
813 56 0.01
814 313 0.08
815 77 0.02
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (810 bp):
TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
AAGACTCTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
TTCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATG
TGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTC
AAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAA
TAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATA
AGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGAATC
TGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCT
ATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAA
GCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTATATATATTC
AAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACATATGAAA
AGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTA
TTATCTTCAAGGTTGGCTGAATATTCTAGA
Found at i:83654 original size:2 final size:2
Alignment explanation
Indices: 83647--83687 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
83637 TCAATCTACA
83647 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83688 CGAAATACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:83862 original size:12 final size:13
Alignment explanation
Indices: 83845--83902 Score: 75
Period size: 13 Copynumber: 4.5 Consensus size: 13
83835 GTGCAACGCA
83845 CGTCATAAATGC-
1 CGTCATAAATGCG
83857 CGTCATAAATGAC-
1 CGTCATAAATG-CG
*
83870 CATCATAAATGCG
1 CGTCATAAATGCG
*
83883 TGTCATAAATGCG
1 CGTCATAAATGCG
83896 CGTCATA
1 CGTCATA
83903 GATTTATGAC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
12 12 0.30
13 28 0.70
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (13 bp):
CGTCATAAATGCG
Found at i:86861 original size:18 final size:18
Alignment explanation
Indices: 86816--86855 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
86806 GCAACATATG
86816 AAAAGACTCAAAAGATGA
1 AAAAGACTCAAAAGATGA
86834 AAAAGACTCAAAAGATGA
1 AAAAGACTCAAAAGATGA
86852 AAAA
1 AAAA
86856 TTCTCATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.65, C:0.10, G:0.15, T:0.10
Consensus pattern (18 bp):
AAAAGACTCAAAAGATGA
Found at i:90525 original size:803 final size:805
Alignment explanation
Indices: 88815--90583 Score: 2575
Period size: 803 Copynumber: 2.2 Consensus size: 805
88805 GAATAATATC
** * **
88815 AACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTT-CTTCAACGGCTTCTCACTTGTC
1 AACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGA-TTCCTTCATTGGCTTGTCACTTGGA
** * *
88879 TGATGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAGTCATCCATGCATAAAATTCCCGTA
65 TGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTA
*
88944 ACAAATTTCCAGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTG
130 ACAAAATTCCAGCCTGCACTGTCTTC-----ATCGATCATATCTCAAGCTCCCGATATCGGATTG
* **
89009 AGGTGATTCAAAAGGCATTGGAAAGATAAGAGAAATATTAATAATTTAAAATTGATTTCTGAAAC
190 AGGTGATTCAAAAGGCATTGGAAAGATAAGAGAAAGAGAAATAATTTAAAATTGATTTCTGAAAC
* * * * *
89074 CAAAAATGTCTGTATCACATCTAGAATCTGAATACATTCTTACTGATATTCTAGCATATGATGAA
255 CAAAAATGTCTGTATCACATCCAGAATCTGAAGACATTATGACTAATATTCTAGCATATGATGAA
*
89139 ACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACTAACACTATAACAAAAG
320 ACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAG
* * *
89204 GAAATGAAGACTACAAGACTATCTTGAAGCTGATAAAGTTCTACAAGAGAATAAGAATTAAAGCA
385 AAAATGAAGACTACAAGACTATATTGAAGCTGATAAAGTTCTACAAGAGAACAAGAATTAAAGCA
* * * *
89269 ACCTCTCAAAAATGTTTTACATGTTCATAATGTGTATATACAAATTATCCCAATGGTGCCTATTT
450 ACCTCTCAAAAATGTTTTACATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTT
* * **
89334 ATAGTATTTTTAAGCAACATATGAAAAGACTCAAAAGATGAACAATTGTCATCAATTTAGCAATA
515 ATAGTATTTCTAAGCAACATATGAAAAGACTC-AAAGATGAAAAATCCTCATCAATTTAGCAATA
* *
89399 AAATGCACTTGAATGCTTTGTCTTTCTTATCTTGAAGGTTGGCTGAATATTCTAGATTATTTTGG
579 AAATGCACTTGAATGCTTTGTCTTTCTTATCTTGAAGGTTGGATGAATATTCTAGATCATTTTGG
*
89464 GATTGAATCTACACAATTTGAAGCTTAATTTGGCCTTAATTTCCTCCATGGGATGGAAGACTCGT
644 GATTGAATCTACACAATTTGAAGCTTAATTTGGCCTTAATTTCCTCCAAGGGATGGAAGACTCGT
* *
89529 GCTATTCAATGCTGAAAATTGTCTTAATAAGTAAATTAAATCACCCTTCATTGCATGCTCCCTTG
709 GCTATTCAATGCTAAAAATTGTCTTAATAAGTAAATTAAATCACCCTTCATTGCATGCTCCCATG
*
89594 AAGAATATTAACAACCCTTGACTTTAGATTAT
774 AAGAATATGAACAACCCTTGACTTTAGATTAT
*
89626 AACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCC-TCATTGGCTTGTCACTTGGAT
1 AACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGATTCCTTCATTGGCTTGTCACTTGGAT
* * * **
89690 TAAATTGAGAAGACTCTCCCTTGGTACAAACTCATCCAAATCATCCATGCGTAAAATTCTAGTAA
66 GAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAA
** *
89755 CAAAATTCTTGCCTGCACTGTCTTCATCGATCATATCTCAAGCTCCC-ATTATCGGATTGGGGTG
131 CAAAATTCCAGCCTGCACTGTCTTCATCGATCATATCTCAAGCTCCCGA-TATCGGATTGAGGTG
* * *
89819 ATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAA-TTATGAATTGATTTCTGGAACCAAA
195 ATTCAAAAGGCATTGGAAAGATAAGAGAAAGAGAAATAATTTA-AAATTGATTTCTGAAACCAAA
* * * * * * * * * * *
89883 CATGTGTGTGTCGCATCCAGAGTTTGAGGATATTATGACTAATATTCTTGCATCTGATGAAACTG
259 AATGTCTGTATCACATCCAGAATCTGAAGACATTATGACTAATATTCTAGCATATGATGAAACCG
* * ** **
89948 TTCAACGAACGTGACGCACTAGGTATATATGATGAGCTAGGAACCAACGTTATAATGAAAGAAAA
324 TTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGAAAA
* * *
90013 TGAAGACTACAAGACTATATTTAAGCTGATAAGGTTCTACAAGATAACAAG-ATTGAAAGCAACC
389 TGAAGACTACAAGACTATATTGAAGCTGATAAAGTTCTACAAGAGAACAAGAATT-AAAGCAACC
** * * *
90077 TCTCAATGATGTTTTATATATTCAAAATGTGTGTATACATATGATCCCAAAGGTGCCTATTTATA
453 TCTCAAAAATGTTTTACATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
* * *
90142 GTATTTCTATGCAGCATATGAAAAGACTC-AAGTTGAAAAATCCTCATCAATTTAGCAATAAAAT
518 GTATTTCTAAGCAACATATGAAAAGACTCAAAGATGAAAAATCCTCATCAATTTAGCAATAAAAT
*
90206 GCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGATGAATATTCTAGATCATTTTGGGGA-
583 GCACTTGAATGCTTTGTCTTTCTTATCTTGAAGGTTGGATGAATATTCTAGATCATTTT-GGGAT
* * * *
90270 TGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCT
647 TGAATCTACACAATTTGAAGCTTAATTTGGCCTTAATTTCCTCCAAGGGATGGAAGACTCGTGCT
* * *
90335 ATTCCATGCTAAAAATTGTCTTAATAAGTGAATTAAAAT-GCCCTTCATTGCATGCTCCCATGAA
712 ATTCAATGCTAAAAATTGTCTTAATAAGTAAATT-AAATCACCCTTCATTGCATGCTCCCATGAA
90399 GAATATGAACAACCCTTGACTTTAGATTAT
776 GAATATGAACAACCCTTGACTTTAGATTAT
* *
90429 AACAATCAGCTTTGAATGCCTTCAATGTATGAA-TAAGATTCCTTCATTGGCTTGTCACTTGGAT
1 AACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGATTCCTTCATTGGCTTGTCACTTGGAT
90493 GAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAA
66 GAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAA
**
90558 CAAAATTCCAGCCAACACTGTCTTCA
131 CAAAATTCCAGCCTGCACTGTCTTCA
90584 ATATGATGAG
Statistics
Matches: 855, Mismatches: 96, Indels: 22
0.88 0.10 0.02
Matches are distributed among these distances:
802 8 0.01
803 364 0.43
804 15 0.02
805 333 0.39
810 95 0.11
811 40 0.05
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (805 bp):
AACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGATTCCTTCATTGGCTTGTCACTTGGAT
GAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAA
CAAAATTCCAGCCTGCACTGTCTTCATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGA
TTCAAAAGGCATTGGAAAGATAAGAGAAAGAGAAATAATTTAAAATTGATTTCTGAAACCAAAAA
TGTCTGTATCACATCCAGAATCTGAAGACATTATGACTAATATTCTAGCATATGATGAAACCGTT
CAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGAAAATG
AAGACTACAAGACTATATTGAAGCTGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCT
CAAAAATGTTTTACATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
TTTCTAAGCAACATATGAAAAGACTCAAAGATGAAAAATCCTCATCAATTTAGCAATAAAATGCA
CTTGAATGCTTTGTCTTTCTTATCTTGAAGGTTGGATGAATATTCTAGATCATTTTGGGATTGAA
TCTACACAATTTGAAGCTTAATTTGGCCTTAATTTCCTCCAAGGGATGGAAGACTCGTGCTATTC
AATGCTAAAAATTGTCTTAATAAGTAAATTAAATCACCCTTCATTGCATGCTCCCATGAAGAATA
TGAACAACCCTTGACTTTAGATTAT
Found at i:92175 original size:809 final size:808
Alignment explanation
Indices: 90620--92853 Score: 3364
Period size: 809 Copynumber: 2.8 Consensus size: 808
90610 TAACAACGCT
* * * *
90620 GATATTCTTACTGATATTGTTGCATCTGATGAAACCGTTCAACGAACGGAACCCACTACCTATAT
1 GATATTCTGACTGATATTGTTGCATATGATGAAACCGTTCAACGAACGTAACCCACTAGCTATAT
* * *
90685 ATGATGAGCTATGAAACAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCATGAAGCCG
66 ATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCG
* * * * *
90750 ATAAAGTTCTAAAAGAGAACATGAATTAAAGAAATCTCTCAAAGATGTTTTATATATTCAAAATA
131 ATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAATATGTTTTATATATTCAAAATA
* * *
90815 TGTGTATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCAAAGTAGCATATGAAAAGACTC
196 TGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTC
90880 AAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCT
261 AAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGC-TTGTCTTTCTTATCT
* * * *
90945 TTAAGGTTGGCTGAATA---T---T-ATTTTGGGGATGAATCTAGA-AATTTAAAGATTAATTTG
325 TCAAGGTTGACTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTG
* * * *
91002 GCCTTAATTTCGTCCAAGGGGTGGAAGACACTTGTTATTCTATGCTGAAAATTCTCTTAATAAGT
390 GCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGT
*
91067 GAATTAAATCACCCTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAATAT
455 G-ATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAG-ATAT
91132 AACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGAT
518 AACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGAT
* *
91197 GAAATTAAGAAGACTCTCCCTTGGTTCAAACTCATCTAAATCATCCATGCATAAAATTCCCATAA
583 GAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCATAA
* *
91262 CAAAATTCCAGCCTGCAATGTCTTCAATAAATCGATCATATCTCAAGCTCCGGATATCGGATTGA
648 CAAAATTCCAGCCTGCAACGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGA
*
91327 GGTGATTCAAAAGGCATTGGAAAGATAAGAGACAGAGAAATAATTGC-CAATTTATTTCTGGAAC
713 GGTGATTCAAAAGGCATTGGAAAGATAAGAGACAGAGAAATAATT-CACAATTGATTTCTGGAAC
* * *
91391 CAAACATGTGTGTATAGCATCAGGAATTTGAA
777 AAAACATGTCTGTATAGCATCAAGAATTTGAA
* * *
91423 GATATTCTGATTGATATTGTTGCATTTGATGAAACCGTTCAACGAACGTAACCCAGTAGCTATAT
1 GATATTCTGACTGATATTGTTGCATATGATGAAACCGTTCAACGAACGTAACCCACTAGCTATAT
** * *
91488 ATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAACCAAGACAACAAGACTATCTTGACGCCG
66 ATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCG
* *
91553 ATAAAGTTCTACAAGAGAACAAGAATTAATGCAACCTCTCAAATATGTCTTATATATTCAAAATA
131 ATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAATATGTTTTATATATTCAAAATA
*
91618 TGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTTTAAGCAGCATATGAAAAGACTC
196 TGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTC
* * *
91683 AAAATATGAAAAATTCTCATTAATTTAGCAATAAAATGCACTTGAATGC-TGTCTTTATTATCTT
261 AAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTGTCTTTCTTATCTT
*
91747 CAACGTTGACTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGG
326 CAAGGTTGACTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGG
* * * * *
91812 CATTAATATCGTCGAAGTGCTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTG
391 CCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTG
* *
91877 TATTAAATCACCCTTCATTGCATGCTCCCTTGAAGTATATGAACAACCCCTGACTTTAGATGATA
456 -ATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT-ATA
* * *
91942 ACGACCAGTTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATG
519 ACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATG
*
92007 AAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCGTAAAATT-CCAGTAA
584 AAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCA-TAA
* * *
92071 CAAAATTCCTGCCTGCACCGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGG
648 CAAAATTCCAGCCTGCAACGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGA
*
92136 GGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCACAATTGATTTCTGGAACA
713 GGTGATTCAAAAGGCATTGGAAAGATAAGAGACAGAGAAATAATTCACAATTGATTTCTGGAACA
* * * *
92201 AAATATTTCTGTATCGCATCAAGAGTTTGAA
778 AAACATGTCTGTATAGCATCAAGAATTTGAA
* * * * * * * *
92232 TACATTCTGACTAATATTCTTGCATATGATGAAACCGTTCAAGGAACGTGACCAACTAGGTATAT
1 GATATTCTGACTGATATTGTTGCATATGATGAAACCGTTCAACGAACGTAACCCACTAGCTATAT
*
92297 ATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATGTTGAAGCCG
66 ATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCG
* * *
92362 ATAAGGTTGTACAAGAGAACAAGAATGAAAGCAACCTCTC-AATGATGTTTTATATATTCAAAAT
131 ATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAAT-ATGTTTTATATATTCAAAAT
* ** * *
92426 GTGTATATACTTATGATCCAAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGTCT
195 ATGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACT
* *
92491 CAAAAGATTAAAAATTTTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATC
260 CAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGC-TTGTCTTTCTTATC
* * * * *
92556 TTCATGGTTGGA-TGAATTTTCTAGATCAATTTGGGAATGAATTTAGACAATTTGAAGCTTAATT
324 TTCAAGGTT-GACTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATT
*
92620 TGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCATAATAA
388 TGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAA
*
92685 GTG--TAAATCACCCTTCATTGCATGCTTCCTTGAAGAATATGAACAACCCTTGACTTTAGATTA
453 GTGATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGA-TA
* * * *
92748 TAACAATCAACTTTGAATGCATTGAAAGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGT
517 TAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGA
* * * * *
92813 TGAAGTTGAAAAGACTCTACCTTGGTTTAAATTCATCCAAA
582 TGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAA
92854 GCATATCAGA
Statistics
Matches: 1291, Mismatches: 124, Indels: 27
0.90 0.09 0.02
Matches are distributed among these distances:
801 27 0.02
803 283 0.22
804 1 0.00
807 1 0.00
808 178 0.14
809 670 0.52
811 129 0.10
812 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (808 bp):
GATATTCTGACTGATATTGTTGCATATGATGAAACCGTTCAACGAACGTAACCCACTAGCTATAT
ATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCG
ATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAATATGTTTTATATATTCAAAATA
TGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTC
AAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTGTCTTTCTTATCTT
CAAGGTTGACTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGG
CCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTG
ATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATATAAC
AATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAA
ATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCATAACAA
AATTCCAGCCTGCAACGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGT
GATTCAAAAGGCATTGGAAAGATAAGAGACAGAGAAATAATTCACAATTGATTTCTGGAACAAAA
CATGTCTGTATAGCATCAAGAATTTGAA
Found at i:97090 original size:810 final size:811
Alignment explanation
Indices: 93088--101872 Score: 8666
Period size: 805 Copynumber: 10.9 Consensus size: 811
93078 GGCTATAACA
* * * * *
93088 TCTCAATGATTTTTTATATATTCAAAATGTGTATCTACAAATGATCCCAAAGATGTCTATTTATA
1 TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
* * *
93153 GTATTTCTATGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCCCATCAATTTGGCAATAAAA
66 GTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAA
*
93218 TGCACTTGAATGCTTTGTCTTTCTTATCTTCAACGTTGGCTGAATATTCTAGATCATTTTGGGGA
131 TGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGA
** *
93283 TGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCAACCAAGGGGTGGAAGACTCCTGCT
196 TGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCT
* * *
93348 ATTCCATGCAGACAATTGTGTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAG
261 ATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAG
* ** *
93413 AGTATGAACAACCCTTGATTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTA
326 AATATGAACAACCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTA
* * *
93478 AGTGTCCTTCAATGGCTTGACACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATC
391 AGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATC
* *
93543 CAAAGCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACGGTCTTCAATAAATCGAT
456 CAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATCGAT
*
93608 CATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAAAGATAAGAGATAGA
521 CATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGA
* * * * * * *
93673 TGAATAATTCCGAATTGATTTATGAAATCAAACATGTCTGTATCACATCTAGAATATGAAGACAT
586 TGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACAT
*
93738 TCTGAATGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGAT
651 TCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGAT
** * **
93803 GAGCTAGGAACCAATGCTATAACAGAACAAAATGAAGACTA-AATGACTATCTTGAAGCCGATAA
716 GAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAA-GACTATCTTGAAGCCGATAA
**
93867 AGTT-TAACAAGAGAACAAGAATGAATTCAACC
780 AGTTCT-ACAAGAGAACAAGAATGAAAGCAACC
* * * *
93899 TCTCAAAGATGTTTTATATTTTCAAAATGTGCATATACATATGATCCCAAAGGTTCCTATTTATA
1 TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
* * * * *
93964 GCATTTCTATGCAGCATATGAAATGACTTACAAGATGAAAAATTCTCATCAATTTAGCAATAAAA
66 GTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAA
* * * * * * *
94029 TGTACTTAAATGCTTTGCCTTTCTTATCTTAAAGGTTGGCTCAATATTATAGATCATTTTGGTGA
131 TGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGA
* * *
94094 CGAATGTAGACAATTTGAAGCTTAATTTGGCCTTAATATCGTCCAAGGGGTGGAAGACTCTTGCT
196 TGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCT
* * *
94159 ATTCCAATGTTGAAAATTGTCTAAATAAGTGAATTAAATCACCCTTCATTGCACGC-CCCATTGA
261 ATTCC-ATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCC-TTGA
* *
94223 AGAATATGAACAACCCTTAACCTTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTGTGAAT
324 AGAATATGAACAACCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTGTGAAT
* * *
94288 TAAGAGTCCTTAAATGTCTTGTCACTTGGATCAAGTTGAAAAGACTCTCCCTTGG-T---A--CA
389 TAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCA
* * * *
94347 ---AACTCATCCATGCATAAAATTCTCGTAACAAAATT-AAGCCTGCACTATCTTCAATAAATCG
454 TCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATCG
* *
94408 ATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAATATAAGAGATA
519 ATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATA
* * *
94473 GATGAATAATTCCCAATTGATTTCCT-GAACCAAACCTGTCTGTATAGCATCCAGATTTTGAAGA
584 GATGAATAATTCCCAATTGATTT-CTGGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGA
* * * *
94537 CTTTCTAACAGATATTCTTGCATCTGATGAAACAGTTCAACGAACGTGACCCACTAGCTATATAT
648 CATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATAT
* * *
94602 GATGAGCTAGGAACCAACGCTATAACAAAAGAAAATGAAGACTA-AATGAATATCTTGAAGCCGA
713 GATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAA-GACTATCTTGAAGCCGA
* **
94666 TAAAGTTCTACAAGAGAACAAGAACGAATTCAACC
777 TAAAGTTCTACAAGAGAACAAGAATGAAAGCAACC
* *
94701 TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACATATGATCCCAAAGGTTCCTATTTATA
1 TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
* * * * *
94766 GCATGTCCAAGCAGCATATGAAATGACTCAAAAGAAGAAAAATT-TGCATCAATTTAGCAATAAA
66 GTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCT-CATCAATTTAGCAATAAA
* * * * *
94830 ATGCACTTGAATGCTTTGCCTTTCTTATCTTTAAGGTTCGCTTAATATTCTAGATCATTTTGGTG
130 ATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGG
* *
94895 ATGAAACTAGGCAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA--CTTGC
195 ATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGC
*
94958 TTTTCCATGCTGAAAAGTT-TCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGA
260 TATTCCATGCTGAAAA-TTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGA
* *
95022 AGAATATGAAAAACCCTTGA-ATTTAGTTGATAACAATCAGCTTTGAAT-CTCTTGAATGTGTGA
324 AGAATATGAACAACCCTTGACA-TTAGATGATAACAATCAGCTTTGAATGC-CTTGAATGTGTGA
* * ** * * *
95085 ATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTTAAGTTTTAGAGACTTTCCCTTGATTCAAACT
387 ATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACT
* * * * *
95150 CATCCAAATCATCCATGCAT-AAATCTCTCGTAATAAAATTCCAGCCTGTATTGTCCTCAATAAA
452 CATCCAAATCATCCATGCATAAAAT-TCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAA
* * * * * *
95214 TTGAACACATCTCAAGCTCCCGATATTGGATTGAGGTGATTCAAAGGGAATTGGAAAGATAAGAG
516 TCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAG
* * * * *
95279 ATAGATAAATAATTCCCAATTGATTTCTGGAAACAAACATGACTGTATCGCATCCAAAATCTGAA
581 ATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATTTGAA
*
95344 GACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTTAACGAACGTGACCCACTAGCTATAT
646 GACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATAT
* * * * * *
95409 TTGATGAGCTAGGAACAAACACTATAACGAAAGGAAATGAAGACCAGAAGACTATCTTGAAGCTG
711 ATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCG
* *
95474 ATAAAGTTCTTCAAGAAAACAAGAATGAAA-CAAACC
776 ATAAAGTTCTACAAGAGAACAAGAATGAAAGC-AACC
* *
95510 TCTCAAAGATGTTTTATATATATATATTCAAAATGTGAATGTACAAATGATCCCAAAGGTG-CTA
1 TCTCAAAGATG---T-T-T-TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTA
* * * *
95574 TTTATAGTATTTTTAAGCAGCATATTAAAAGAATCAAAAGATGAAAGATTCTCATCAATTTAGCA
60 TTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCA
* *
95639 ATAAAGTGCAATTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTT
125 ATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTT
* *
95704 TGGGGATGAATCTAGACAATTTGAAGCTTCATTTGGCCTTAATTTTGTCCAAGGGGTGGAAGACT
190 TGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACT
*
95769 C-T-CTATTCCATGCTGAAAATTGTATTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCC
255 CTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCC
* * *
95832 TTGAAGAATATGAACAACCCTTGACATTAGATGATAAAAATCATCTTTGAATACCTTGAATGTGT
320 TTGAAGAATATGAACAACCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTGT
* * * * *
95897 GAATTAAGAGTCCTTCAATGGCTTCTCACTTAGCTGAAGTTGAAAAGTCTCTCCCTTTGTTC-AA
385 GAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAA
* *
95961 ---A--C---TCATCCATGCATAAAATTCCCGTAACAAAATTTCAGCCTGCACTATCTTCAATAA
450 CTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAA
* * *
96018 ATCGATCGTATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAAGCATTGAAAAGATAAGA
515 ATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGA
* * * * * *
96083 GATATATGAATAATTACCAATTGATTTCTTGAACCAAACATGCCTGTATCGCATCCTGATTTTGA
580 GATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATTTGA
* *
96148 AGACATTCTGACTGATATTCTTGCATCTGATGAAATCGTTCAACGAACGTGACCCACTAGTTATA
645 AGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATA
* * * * * *
96213 TATGATAAGCAAGGAACTAACACTATAACAACAGAAAATGAAGACTACAGGACTATCTTGAAGCC
710 TATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCC
* * * *
96278 GATAAGGTTATACAAGAGAACAATAATAAAAGCAACC
775 GATAAAGTTCTACAAGAGAACAAGAATGAAAGCAACC
* ** *
96315 TCTCAACGATGTTTTATATATTCAAAATGTGTATATACGTATGATCTCAAAGGTGCCTATTTATA
1 TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
* * * * * * *
96380 GTATTTCTAAGCAACATTTGAAACGACTCAAAAGTTTAAAAATTCTAATTAATATT-GCAATAAA
66 GTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAAT-TTAGCAATAAA
* * *
96444 ATGCAATTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGATGAATATTCTAGATCATTTTGGGG
130 ATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGG
96509 ATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAA-GGGTGGAAGACTCTTGC
195 ATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGC
96573 TATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAA
260 TATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAA
* *
96638 GAATATGAACAATCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCTTGAAAGTGTGAATT
325 GAATATGAACAACCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATT
* *
96703 AAGATTTCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCAT
390 AAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCAT
*
96768 CCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATTGA
455 CCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATCGA
* * * * *
96833 TCATATCTTAAGCTCCAGCTATCGGATTGAGGTGATTCAAAAGGCATCGGAAAGATAAAAGATAG
520 TCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAG
* * * *
96898 CTGAATAATTCACAATTGATTTCTGGAACCAAACATGTCTGTATCGTATCCAGAATCTGAAGACA
585 ATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACA
* * ** * *
96963 TTCTGACTGATATTCCTGCATCTAATGAAACCGTTCAAATAACGTGACTCACTAGCTATATTTGA
650 TTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGA
** * * * * *
97028 TGAGAGAGGAACCAACACTATAACAAAAGGAAATGAACACTACTAGACTGTCTCGGAGCCGATAA
715 TGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAA
* *
97093 AGTTCTACAAGAG-ACAAGAATGATAGAAACC
780 AGTTCTACAAGAGAACAAGAATGAAAGCAACC
* *
97124 TCTCAAAGATGTTTTATATATATTCAAAATGTGTATCTACAAATGATCCCAACGGTG-CTATTTA
1 TCTCAAAGATG-TTT-TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTA
* * * * * * *
97188 TAATATTTCTAAGCAGCATATGAAAAAACACAAAAGTTTAAAAACTCACATCAATTTAGCAATAA
64 TAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAA
* * *
97253 AAAGCACTTGAATACTTTGTCTTGCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGG
129 AATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGG
* *
97318 GATGAATCTAGAGAATTTGAAGCTTAATTTGGCCATAATTTCGTCCAAGGGGTGGAAGA--C-T-
194 GATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTG
* * *
97379 CTATTCCATGCTGAAAATTGTCTTAATAGGTGAATTAAAGCACCCTTCATTGCATGCTTCCTTGA
259 CTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGA
* * *
97444 AGAATATGAACAACCCTTGATATTAGATGATAACAATCATCTTTGAATACCTTGAATGTGTGAAT
324 AGAATATGAACAACCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTGTGAAT
* * *
97509 TAAGAGTCCTTCAATGGTTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCA
389 TAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCA
* * * *
97574 T-C----CA--CA--CATAAAATTCTCGCAACAAAATTCCAGCCTGCACTATCTTCAATAAATTG
454 TCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATCG
* * *
97630 ATCATATCTCAAGCTCCCGATATCAGATTGAGGTGAATCAAATGGCATT-GAATAGATAAGAGAT
519 ATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAA-AGATAAGAGAT
* *
97694 AGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATTGCATCCATAATTTGAAGA
583 AGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGA
* * * ** ** * * *** *
97759 CATTCTAACGGATATTCTTGCATAT--TGTCA-CGGGCTA-GAAACTTGGGTC-CGAGAC-AT-T
648 CATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACG-AACGTGACCCACTAG-CTATAT
* * ** * * ** * ** *
97817 GGTG-TAAGCGTCCG-ACCAAGAGGT-T--CAATACTGAGAATCG--GGCTTACCGTGACTA-CC
711 -ATGATGAGC-TAGGAACCAACA-CTATAACAA-AAGGA-AAT-GAAGAC-TA-CAAGACTATCT
* *** ** ** * * * *
97874 AGAATTAG-CCAA-TTCT--TGGAG-A-ATG-CT-TAA-CAA-G
768 TGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAACC
**** * ** * * * * * * *** * * * *
97908 TC-C---G-TGAAGGATCTATTC-CGAGGCGTCCGAGAGGAGC-GACGAGGGCGATGGGGGC-AG
1 TCTCAAAGATGTTTTATATATTCAAAATGTGT---ATA-TA-CAAATGATCCCAAAGGTGCCTA-
* * * * * ** * ** ** * *
97965 TGTTGTCAAGGCTCGTGGATTCAAACCAGGACATGTGAGCAGATATCTGTAAGA-GAATTATGCA
60 T-TTAT--A-G-T-AT---TTCTAAGCA-G-CATATGAAAAGA-CTC-AAAAGATGAAAAATTCT
* * * * * * * * * * *** * ***
98029 GA-CTATTGGGCTTGCCCAGAACCAT-CAAATCTGGCCCATTCCTTGGAGGATTCTAGAAGGAT-
112 CATCAATT----TAG-CAATAA-AATGC--A-CTTG---AATGCTTTG-TCTTTCT--TATCTTC
* * * ** ** * ** *
98091 AATGTTAGG-TGGGAT-TTCCT---TGATTTAAGGGATTGGGT-TAG---GTGGGAA--TCAATC
162 AAGGTT-GGCT-GAATATT-CTAGATCATTTTGGGGA-TGAATCTAGACAATTTGAAGCTTAAT-
* * * * ** ** ** ** *
98145 CTAGCCCTTCATGTAAAACGATCTTAGCCATCGATTGAGAGAGAGCTC-CCCTA-TAAAT--AGA
222 -TTGGCCTTAAT-T-------TCGT--CCAAGGGGTG-GA-AGA-CTCTTGCTATTCCATGCTGA
* ** * * ** * * * ** *
98206 GAGCTCTCCTCCTCA-T---TTGTAATCACCCAATTCCATT-C-TTCTCTTTGTGAGAGAGTAAT
273 AAATTGTCTTAATAAGTGAATT-AAATCACCC--TT-CATTGCATGCTCCCT-TGA-AGAAT-AT
* * *** * * ** * * * * * *
98265 -AA-AGCTC-TGAGGCATTTTCT-CTATTCTTTCTGAG-TTCTTAGTTTCTTTG-TTCTTGTTGC
331 GAACAACCCTTGA--CATTAGATGATA-ACAATC--AGCTT-TGA-ATGCCTTGAAT-GTG-TG-
* * * * * * * * * * * *
98324 CTATCT-TG-GTGGC--C-A-GGAGTAGCCACCTTCGTGTTAGCACTTCCACACGATAGTC-CGA
386 -AAT-TAAGAGT-CCTTCAATGG-CTTGTCA-CTT-G-GAT-GAAGTT-GA-A--A-AGACTC-T
* * ** * * * *** ** ** * * **
98382 CCTTGTGGCTCGGAGT-AGCC--AT-GTTGGTGTTTAAAACTT-CCGTAATCCGAA-GCCTTGAG
437 CCCT-TGGTTCAAACTCATCCAAATCATCCATGCATAAAA-TTCCCGTAA-CAAAATTCC-AGCC
* * * *** * * * * * *
98441 AGC-TTGGT-TCCAA-CCTTTG-TGAGT-TCGCACA-CTCAC--TA--GGCTTG-GGTAAGGCTT
498 TGCACT-GTCTTCAATAAATCGATCA-TATCTCA-AGCTCCCGATATCGGATTGAGGT---GATT
** * *** ** * * * * ** ** * ** *
98495 -ACTTAGTCGCCGAGAAGACCGAGGAGCGTCTAAAGCGTCTAAGGCCGC-A-CGA---CCCG--T
557 CA-AAAGGCATTG-GAA-A--GATAAGAG-ATAGA-TGAATAATTCC-CAATTGATTTCTGGAAC
* * * **** *
98552 CAGACTTTGACTCT-TAT---ATTCC-GACAGTTTGAGGCATCGAATT-T--CTG-GGGGCGTGA
614 CAAAC-ATG--TCTGTATCGCA-TCCAGA-A-TTTGAAG-A-C--ATTCTGACTGATATTCTTG-
* * * * *
98608 CAATATGATGAAACCATTCAACGAATGTGACCCACTAGCTATATATGATGATCTAGGAACCAACG
668 C-ATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACA
* *
98673 CTATAAAAAAAGGAAATGAAGACTA-AACAACTATCTTGAAGCCGATAAAGTTCTA-AAGAGAAC
732 CTATAACAAAAGGAAATGAAGACTACAA-GACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
98736 AAGAATGAAAGCAACC
796 AAGAATGAAAGCAACC
* * *
98752 TCTCAAAGATGTTTTATACATTCAAAATGTGTATCTACAAATGATCCCAAAGATGCCTATTTATA
1 TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
* * * * * *
98817 ATATTCCTAAGCACCATGTGAAAAGACTCAAAAGATG-AAAATTCTCATTAATTTAGAAATAAAA
66 GTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAA
** * * *
98881 AACACTTGAATGCTTTGCCTTTCTTATCTTTAAGGTTGGCT-ATATATTCTAGATAATTTTGGGG
131 TGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGA-ATATTCTAGATCATTTTGGGG
* * *
98945 ATGAATCTAGATAATTTGAAGCTTAATTTGGCCTTAATTTCGTCGAAGTGGTGGAAGACTCTTGC
195 ATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGC
* * *
99010 TATTCCATGCTGAAAATTGTCTTAATAAGTGACTTAAAACACCCTTCATTGCATTCTCCCTTGAA
260 TATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAA
* * * *
99075 GTATATGAACAACCATTGACTTTAGATGATAACAA-CTAGCTTTGAA-----T--A--CGTGAAT
325 GAATATGAACAACCCTTGACATTAGATGATAACAATC-AGCTTTGAATGCCTTGAATGTGTGAAT
* *
99130 TAAGAGTCCTTCAATTGCTTGTCACTTGGATGAAGTTGAAAGGACTCTCCCTTGGTTCAAACTCA
389 TAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCA
* * * *
99195 ACCAAATCACCCATGCATAAAATTCCTGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATTG
454 TCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATCG
** * ** * * * *
99260 ATCATATCGGAAGCTCCTGATATTAGATTGAGGTGATTCAAGAGACATTGAAAAGATAAGTGATA
519 ATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATA
* * * ** *
99325 GATGAATAATTCCCAATTGATTTCTTGAACAAAACATCTCTGTATCAAATCCAGATTTTGAAGAC
584 GATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGAC
* * * * *
99390 ATTCTGACTGATATTCTTGCTTCTGATGAAACCGTTCAATGAACGTGACCTACTAGCTATATGTA
649 ATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATG
* * *
99455 ATGAGCTAGGAACCAACGCTATAAC-AAACGAAATGAAGACTA-AATGACTATCTTGAAGCCAAT
714 ATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAA-GACTATCTTGAAGCCGAT
* * * *
99518 AAAGTTATACAACAAAACAAGAATAAAAGCAACC
778 AAAGTTCTACAAGAGAACAAGAATGAAAGCAACC
* * * *
99552 TCTCAAATATGTTTTATATATTCAAAATGTTTATCTACAAATGATCCCAAAGATGCCTATTTATA
1 TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
* * *
99617 GCATTTCTAAGCAGCATATGAAATGACTCAAAAGATGAAAAATGCTCATCAATTTAGCAATAAAA
66 GTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAA
** *
99682 TGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGAATATTCTAGATCATTTTTGGGA
131 TGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGA
* * * * * *
99747 TGAATCCAAATAATTTGAATCTTAATTTGGACTTAATTTCGTCCAAGTGGTGGAAGACTCTTGCT
196 TGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCT
* * *
99812 ATTCCATGCTGAAAATTATCTTAATAAGTGAACTAAATAACCCTTCATTGCATGCTCCCTT----
261 ATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAG
* * * * *
99873 AA-ATGAACAACCATTAACTTTAGATGATAATAACCAGCTTTGAATGCCTTGAATGTGTGAATTA
326 AATATGAACAACCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTA
* *
99937 AGAGTCCTTCATTGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGTTTCAAACTCATC
391 AGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATC
* *
100002 CAAATCACCCATGTATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATCGAT
456 CAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATCGAT
* * * * *
100067 CATATCTCCAGCTCCCGATATTGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATA
521 CATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGA
* * * * * *
100132 TGAACAATTCCCAATTGATTTCTTGAACCAAAAATGTTTTTATCGCATCCAGATTTTGAAGACAT
586 TGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACAT
* * *
100197 TTTGACTAATATTCTTGCATCTGATGTAACCGTTCAACGAACGTGACCCACTAGCTATATATGAT
651 TCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGAT
* *
100262 AAGCTAGGAACTAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAA
716 GAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAA
*
100327 GTTCTACAAGAGAACAAAAATGAAAGCAACC
781 GTTCTACAAGAGAACAAGAATGAAAGCAACC
* *
100358 TCTCAAAGATGTTTTATATATATTCAAAATGTGAATGTACAAATGATCCCAAAGGTGCCTATTTA
1 TCTCAAAGATG-TTT-TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTA
* * * *
100423 TAGCATTTCTAAGCAGCATATGAAATGACTCAAAAGATAAAAAATTATCATCAATTTAGCAATAA
64 TAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAA
** * *
100488 AATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGAATATTTTAGATCATTTTTGG
129 AATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGG
* * *
100553 GATGAATCTAGACAATTTGAA-TTATAATTTGCCCTTAATTTCGTCCAAGTGGTGGAAGA--CTT
194 GATGAATCTAGACAATTTGAAGCT-TAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTT
* * *
100615 GCTATTCCAAGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTAG
258 GCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTG
* * *
100680 AAG-ATAACGAACAACCCTTGACTTTAGATGATAACAACCAGCTTTGAATGCCTTGAATGTGTGA
323 AAGAAT-ATGAACAACCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTGTGA
* * * * * ** *
100744 ATTAAGAGTCCCTGAATGGCTTGTCACTTGGCTGAAGTTTAAAAAAAAACTCCCTTGGCTCAAAC
387 ATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAG-TTGAAAAGACTCTCCCTTGGTTCAAAC
* *
100809 TCATCCAAATCATCCATGCAT-AAATCTCCCGTTACAAAATTCCAGCCTGCACTGTATTCAATAA
451 TCATCCAAATCATCCATGCATAAAAT-TCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAA
* * **
100873 ATCGATCATATCTAAAGCTCCCGATATC-GATTGAGGAGATAT-AAAAGGCATCAGAAAGATAAG
515 ATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGAT-TCAAAAGGCATTGGAAAGATAAG
* ** * * * ** * * *
100936 AGGTAGAAAAATAATTCTCAATTGATTTCTGGAAGCAATCATAACTTTATCACATGCAGAATTTG
579 AGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATTTG
* * * *** *
101001 AAGACATTCAG-CTGATATTTTTGCATCTAATGAAACCGTTCATTAAACGTGACCCACTAACTAT
644 AAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTAT
* ** * * *
101065 TTATGATGAGCTAGGAACCAATGCTATAACAGAAGGAAATGAATACTACAAGACAATCTTGAAGC
709 ATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGC
* *
101130 TGATAAAGTTCTAGAAGAGAACAAGAATGAAAGCAACC
774 CGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAACC
*
101168 TCTCAAAGATGTTTAATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
1 TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
* *
101233 GTATTTCTAAGCAGCATATGAAAAGACTCAAAAAAAGAAAAATTCTCATCAATTTAGCAATAAAA
66 GTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAA
*
101298 TGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGGTCATTTTGGGGA
131 TGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGA
*
101363 TGAATCTAGACAATTTGAAG-TTAATTTGGCCTTATTTTCGTCCAAGGGGTGGAAGACT-TT-CT
196 TGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCT
* * *
101425 ATTCCATGCTGAAAATTGTCTTAATAGGTGAATTAAATTACCCTTCATTGCAAGCTTCCC-TGAA
261 ATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC-TCCCTTGAA
* * *
101489 GAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTCGAATGTGTGAATT
325 GAATATGAACAACCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATT
* * * *
101554 AAGAGTCCTTCAAAGGTTTGTCACTT-GACTGAAGTTCAAAAGACTTTCCCTTGGTTCAAACTCA
390 AAGAGTCCTTCAATGGCTTGTCACTTGGA-TGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCA
*
101618 TCCAAATCATCCATGCATAAAATTCTCGTAACAAAATTCCA----GC-CTG----C----AA--G
454 TCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATCG
101668 ------------GCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATA
519 ATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATA
* * * * * * * * * *
101721 GATAAAAAATTCACAATTGATTTCCGAAACCAAATATGTTTGTATCTCATCGAGAATCTGAAGAC
584 GATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGAC
* * * *
101786 ATTCTGACTGATATTCTTGCAGCTGATGAAACCGTTCAAAGAACGTGACACACTAGCTATATTTG
649 ATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATG
101851 ATGAGCTAGGAACCAACACTAT
714 ATGAGCTAGGAACCAACACTAT
101873 GTTATATATA
Statistics
Matches: 6545, Mismatches: 1097, Indels: 694
0.79 0.13 0.08
Matches are distributed among these distances:
776 4 0.00
777 7 0.00
779 16 0.00
780 99 0.02
781 71 0.01
782 3 0.00
783 1 0.00
784 3 0.00
785 2 0.00
786 2 0.00
787 2 0.00
788 2 0.00
789 4 0.00
790 7 0.00
791 9 0.00
792 18 0.00
793 29 0.00
794 18 0.00
795 19 0.00
796 52 0.01
797 20 0.00
798 205 0.03
799 270 0.04
800 384 0.06
801 403 0.06
802 546 0.08
803 72 0.01
804 16 0.00
805 649 0.10
806 215 0.03
807 370 0.06
808 454 0.07
809 318 0.05
810 621 0.09
811 472 0.07
812 275 0.04
813 33 0.01
814 350 0.05
815 60 0.01
816 24 0.00
817 29 0.00
818 17 0.00
819 15 0.00
820 20 0.00
821 11 0.00
822 8 0.00
823 18 0.00
824 5 0.00
825 12 0.00
826 26 0.00
827 15 0.00
828 16 0.00
829 27 0.00
830 15 0.00
831 22 0.00
832 20 0.00
833 25 0.00
834 23 0.00
835 30 0.00
836 7 0.00
837 12 0.00
838 3 0.00
839 1 0.00
840 3 0.00
841 2 0.00
842 2 0.00
843 4 0.00
844 2 0.00
845 5 0.00
846 10 0.00
847 2 0.00
848 1 0.00
849 8 0.00
850 4 0.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (811 bp):
TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
GTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAA
TGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGA
TGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCT
ATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAG
AATATGAACAACCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTA
AGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATC
CAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAATAAATCGAT
CATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGA
TGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACAT
TCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGAT
GAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAA
GTTCTACAAGAGAACAAGAATGAAAGCAACC
Found at i:101189 original size:808 final size:808
Alignment explanation
Indices: 98613--101872 Score: 4212
Period size: 808 Copynumber: 4.1 Consensus size: 808
98603 CGTGACAATA
* * * *
98613 TGATGAAACCATTCAACGAATGTGACCCACTAGCTATATATGATGATCTAGGAACCAACGCTATA
1 TGATGAAACCGTTCAATGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATA
* *
98678 AAAAAAGGAAATGAAGACTAAACAACTATCTTGAAGCCGATAAAGTTCTA-AAGAGAACAAGAAT
66 ACAAAAGGAAATGAAGACTAAACGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAAT
* *
98742 GAAAGCAACCTCTCAAAGATGTTTTATACATTCAAAATGTGTATCTACAAATGATCCCAAAGATG
131 GAAAGCAACCTCTCAAAGATGTTTAATATATTCAAAATGTGTATCTACAAATGATCCCAAAGATG
** * * * * *
98807 CCTATTTATAATATTCCTAAGCACCATGTGAAAAGACTCAAAAGAT-GAAAATTCTCATTAATTT
196 CCTATTTATAGCATTTCTAAGCAGCATATGAAAAGACTCAAAAGATAAAAAATTCTCATCAATTT
* ** * * **
98871 AGAAATAAAAAACACTTGAATGCTTTGCCTTTCTTATCTTTAAGGTTGGCT-ATATATTCTAGAT
261 AGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGA-ATATTCTAGAT
* * * *
98935 AATTTTGGGGATGAATCTAGATAATTTGAAGCTTAATTTGGCCTTAATTTCGTCGAAGTGGTGGA
325 CATTTTGGGGATGAATCTAGACAATTTGAA-TTTAATTTGGCCTTAATTTCGTCCAAGTGGTGGA
* * * *
99000 AGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGACTTAAAACACCCTTCATTGCATT
389 AGAC-CTTGCTATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATG
*
99065 CTCCCTTGAAG-TATATGAACAACCATTGACTTTAGATGATAACAACTAGCTTTGAA-----T--
453 CTCCC-TGAAGATATATGAACAACCATTGACTTTAGATGATAACAACCAGCTTTGAATGCCTTGA
* * *
99122 A--CGTGAATTAAGAGTCCTTCAATTGCTTGTCACTTGGATGAAGTTGAAAGGACTCTCCCTTGG
517 ATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGG
* *
99185 TTCAAACTCAACCAAATCACCCATGCATAAAATTCCTGTAACAAAATTCCAGCCTGCACTGTCTT
582 TTCAAACTCATCCAAATCACCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTT
* ** * * *
99250 CAATAAATTGATCATATCGGAAGCTCCTGATATTAGATTGAGGTGATTCAAGAGACATTGAAAAG
647 CAATAAATCGATCATATCTAAAGCTCCCGATATTAGATTGAGGTGATTCAAAAGGCATTGAAAAG
* * * *
99315 ATAAGTGATAGATGAATAATTCCCAATTGATTTCTTGAACAAAACATCTCTGTATCAAATCCAGA
712 ATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAAC-AAACATATCTTTATCACATCCAGA
*
99380 TTTTGAAGACATTCTGACTGATATTCTTGCTTC
776 TTTTGAAGACATTCTGACTGATATTCTTGCATC
* * *
99413 TGATGAAACCGTTCAATGAACGTGACCTACTAGCTATATGTAATGAGCTAGGAACCAACGCTATA
1 TGATGAAACCGTTCAATGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATA
* * * * * *
99478 AC-AAACGAAATGAAGACTAAATGACTATCTTGAAGCCAATAAAGTTATACAACAAAACAAGAAT
66 ACAAAAGGAAATGAAGACTAAACGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAAT
* * * *
99542 AAAAGCAACCTCTCAAATATGTTTTATATATTCAAAATGTTTATCTACAAATGATCCCAAAGATG
131 GAAAGCAACCTCTCAAAGATGTTTAATATATTCAAAATGTGTATCTACAAATGATCCCAAAGATG
* * *
99607 CCTATTTATAGCATTTCTAAGCAGCATATGAAATGACTCAAAAGATGAAAAATGCTCATCAATTT
196 CCTATTTATAGCATTTCTAAGCAGCATATGAAAAGACTCAAAAGATAAAAAATTCTCATCAATTT
99672 AGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGAATATTCTAGATC
261 AGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGAATATTCTAGATC
* * * * *
99737 ATTTTTGGGATGAATCCAAATAATTTGAATCTTAATTTGGACTTAATTTCGTCCAAGTGGTGGAA
326 ATTTTGGGGATGAATCTAGACAATTTGAAT-TTAATTTGGCCTTAATTTCGTCCAAGTGGTGGAA
* *
99802 GACTCTTGCTATTCCATGCTGAAAATTATCTTAATAAGTGAACTAAATAACCCTTCATTGCATGC
390 GAC-CTTGCTATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
* * *
99867 TCCCT-----TAAATGAACAACCATTAACTTTAGATGATAATAACCAGCTTTGAATGCCTTGAAT
454 TCCCTGAAGATATATGAACAACCATTGACTTTAGATGATAACAACCAGCTTTGAATGCCTTGAAT
* *
99927 GTGTGAATTAAGAGTCCTTCATTGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGTTT
519 GTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTT
*
99992 CAAACTCATCCAAATCACCCATGTATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCA
584 CAAACTCATCCAAATCACCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCA
** * *
100057 ATAAATCGATCATATCTCCAGCTCCCGATATTGGATTGAGGTGATTCAAAAGGAATTGAAAAGAT
649 ATAAATCGATCATATCTAAAGCTCCCGATATTAGATTGAGGTGATTCAAAAGGCATTGAAAAGAT
* * * * * *
100122 AAGAGATATATGAACAATTCCCAATTGATTTCTTGAACCAAAAATGTTTTTATCGCATCCAGATT
714 AAGAGATAGATGAATAATTCCCAATTGATTTCTTGAA-CAAACATATCTTTATCACATCCAGATT
* *
100187 TTGAAGACATTTTGACTAATATTCTTGCATC
778 TTGAAGACATTCTGACTGATATTCTTGCATC
* * * * *
100218 TGATGTAACCGTTCAACGAACGTGACCCACTAGCTATATATGATAAGCTAGGAACTAACACTATA
1 TGATGAAACCGTTCAATGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATA
*
100283 ACAAAAGGAAATGAAGACTACAA-GACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAAAA
66 ACAAAAGGAAATGAAGACTA-AACGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAA
* *
100347 TGAAAGCAACCTCTCAAAGATGTTTTATATATATTCAAAATGTGAATGTACAAATGATCCCAAAG
130 TGAAAGCAACCTCTCAAAGATG-TTTA-ATATATTCAAAATGTGTATCTACAAATGATCCCAAAG
* * *
100412 GTGCCTATTTATAGCATTTCTAAGCAGCATATGAAATGACTCAAAAGATAAAAAATTATCATCAA
193 ATGCCTATTTATAGCATTTCTAAGCAGCATATGAAAAGACTCAAAAGATAAAAAATTCTCATCAA
*
100477 TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGAATATTTTAG
258 TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGAATATTCTAG
* *
100542 ATCATTTTTGGGATGAATCTAGACAATTTGAATTATAATTTGCCCTTAATTTCGTCCAAGTGGTG
323 ATCATTTTGGGGATGAATCTAGACAATTTGAATT-TAATTTGGCCTTAATTTCGTCCAAGTGGTG
*
100607 GAAGA-CTTGCTATTCCAAGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
387 GAAGACCTTGCTATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* *
100671 GCTCCCTAGAAGATA-ACGAACAACCCTTGACTTTAGATGATAACAACCAGCTTTGAATGCCTTG
452 GCTCCCT-GAAGATATATGAACAACCATTGACTTTAGATGATAACAACCAGCTTTGAATGCCTTG
* * * * * **
100735 AATGTGTGAATTAAGAGTCCCTGAATGGCTTGTCACTTGGCTGAAGTTTAAAAAAAAACTCCCTT
516 AATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAG-TTGAAAAGACTCTCCCTT
* * *
100800 GGCTCAAACTCATCCAAATCATCCATGCAT-AAATCTCCCGTTACAAAATTCCAGCCTGCACTGT
580 GGTTCAAACTCATCCAAATCACCCATGCATAAAAT-TCCCGTAACAAAATTCCAGCCTGCACTGT
* * * *
100864 ATTCAATAAATCGATCATATCTAAAGCTCCCGATA-TCGATTGAGGAGATAT-AAAAGGCA-TCA
644 CTTCAATAAATCGATCATATCTAAAGCTCCCGATATTAGATTGAGGTGAT-TCAAAAGGCATTGA
* ** * * * *
100926 GAAAGATAAGAGGTAGAAAAATAATTCTCAATTGATTTCTGGAAGCAATCATAACTTTATCACAT
708 -AAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAA-CAAACATATCTTTATCACAT
* * * *
100991 GCAGAATTTGAAGACATTCAG-CTGATATTTTTGCATC
771 CCAGATTTTGAAGACATTCTGACTGATATTCTTGCATC
* * * * * *
101028 TAATGAAACCGTTCATTAAACGTGACCCACTAACTATTTATGATGAGCTAGGAACCAATGCTATA
1 TGATGAAACCGTTCAATGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATA
* * * * *
101093 ACAGAAGGAAATGAATACTACAA-GACAATCTTGAAGCTGATAAAGTTCTAGAAGAGAACAAGAA
66 ACAAAAGGAAATGAAGACTA-AACGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAA
* *
101157 TGAAAGCAACCTCTCAAAGATGTTTAATATATTCAAAATGTGTATATACAAATGATCCCAAAGGT
130 TGAAAGCAACCTCTCAAAGATGTTTAATATATTCAAAATGTGTATCTACAAATGATCCCAAAGAT
* *
101222 GCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAA-AAAGAAAAATTCTCATCAAT
195 GCCTATTTATAGCATTTCTAAGCAGCATATGAAAAGACTCAAAAGATA-AAAAATTCTCATCAAT
** *
101286 TTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGG
259 TTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGAATATTCTAGA
* * *
101351 TCATTTTGGGGATGAATCTAGACAATTTGAAGTTAATTTGGCCTTATTTTCGTCCAAGGGGTGGA
324 TCATTTTGGGGATGAATCTAGACAATTTGAATTTAATTTGGCCTTAATTTCGTCCAAGTGGTGGA
* * * * *
101416 AGA-CTTTCTATTCCATGCTGAAAATTGTCTTAATAGGTGAATTAAATTACCCTTCATTGCAAGC
389 AGACCTTGCTATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
* * * *
101480 TTCCCTGAAGA-ATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTCGAA
454 -TCCCTGAAGATATATGAACAACCATTGACTTTAGATGATAACAACCAGCTTTGAATGCCTTGAA
* * * *
101544 TGTGTGAATTAAGAGTCCTTCAAAGGTTTGTCACTT-GACTGAAGTTCAAAAGACTTTCCCTTGG
518 TGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGA-TGAAGTTGAAAAGACTCTCCCTTGG
* *
101608 TTCAAACTCATCCAAATCATCCATGCATAAAATTCTCGTAACAAAATTCCA----GC-CTG----
582 TTCAAACTCATCCAAATCACCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTT
** *
101664 C----AA--G------------GCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAG
647 CAATAAATCGATCATATCTAAAGCTCCCGATATTAGATTGAGGTGATTCAAAAGGCATTGAAAAG
* * * * * * * *
101711 ATAAGAGATAGATAAAAAATTCACAATTGATTTC-CGAAACCAA-ATATGTTTGTATCTCATCGA
712 ATAAGAGATAGATGAATAATTCCCAATTGATTTCTTG-AACAAACATAT-CTT-TATCACATCCA
* * *
101774 GAATCTGAAGACATTCTGACTGATATTCTTGCAGC
774 GATTTTGAAGACATTCTGACTGATATTCTTGCATC
* * * *
101809 TGATGAAACCGTTCAAAGAACGTGACACACTAGCTATATTTGATGAGCTAGGAACCAACACTAT
1 TGATGAAACCGTTCAATGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTAT
101873 GTTATATATA
Statistics
Matches: 2175, Mismatches: 244, Indels: 101
0.86 0.10 0.04
Matches are distributed among these distances:
778 3 0.00
779 16 0.01
780 79 0.04
781 69 0.03
791 1 0.00
793 2 0.00
796 41 0.02
797 1 0.00
799 42 0.02
800 173 0.08
801 195 0.09
802 3 0.00
803 1 0.00
805 318 0.15
806 196 0.09
807 188 0.09
808 413 0.19
809 4 0.00
810 150 0.07
811 177 0.08
812 103 0.05
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (808 bp):
TGATGAAACCGTTCAATGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATA
ACAAAAGGAAATGAAGACTAAACGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAAT
GAAAGCAACCTCTCAAAGATGTTTAATATATTCAAAATGTGTATCTACAAATGATCCCAAAGATG
CCTATTTATAGCATTTCTAAGCAGCATATGAAAAGACTCAAAAGATAAAAAATTCTCATCAATTT
AGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGAATATTCTAGATC
ATTTTGGGGATGAATCTAGACAATTTGAATTTAATTTGGCCTTAATTTCGTCCAAGTGGTGGAAG
ACCTTGCTATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTC
CCTGAAGATATATGAACAACCATTGACTTTAGATGATAACAACCAGCTTTGAATGCCTTGAATGT
GTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCA
AACTCATCCAAATCACCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCAAT
AAATCGATCATATCTAAAGCTCCCGATATTAGATTGAGGTGATTCAAAAGGCATTGAAAAGATAA
GAGATAGATGAATAATTCCCAATTGATTTCTTGAACAAACATATCTTTATCACATCCAGATTTTG
AAGACATTCTGACTGATATTCTTGCATC
Found at i:107525 original size:813 final size:798
Alignment explanation
Indices: 105890--107729 Score: 2373
Period size: 813 Copynumber: 2.3 Consensus size: 798
105880 TTTGTATCAT
* * * ** *
105890 ATCCAGATTTTGAAGACATTTTGACTGATATTCTTGCATCTGATGAAACAATTCAACGAACGTGA
1 ATCCAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGT
* * * * * **
105955 CCCA-ATAGCTACATATGATAAGCAAGGAACCAATGA-TATAACAAAACAAAATGAAGACTACAA
66 CCCACA-AGCTATATTTGATGAGCTAGGAACCAA-CACTATAAC-AAAGGAAATGAAGACTACAA
* * * * * *
106018 GAGTATCTTGAAGCCGATAAGGCTCTACAAGAGAACAAGAATGAAAGCAACCTCTCAATGATATT
128 GACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTT
* * * * *
106083 T-TATATATTCAAAATGTGTATATATATATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGC
193 TATATATATTCAAAATGTGTATCTACAAATTATCCAAAAGGTGCCTATTTATAGTATTTCTAAGC
* * *
106147 AGCATATGAAAAGACTCAAATGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATG
258 AGCATATGAAAAGAATCAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAATGCACTTGAATG
* * * * *
106212 CATTGACTTTCTTATTTTTAAGGTTGACTAAATATTCTAGATCATTTTGGGGGATGAATCTAGAG
323 CATTGAATTTCTTATCTTCAACGTTGACTAAATATTCTAGATCATTTTGGGGGATGAATCTAGAC
* *
106277 AATTTAAAGATTAATTTGACCTTAATTTCGTCCAAGTGGTGGAAGACTCTTGCTATTCCATGCTG
388 AATTTAAAGATTAATTTGACCTTAATTTCGTCCAAGGGGTGGAAGAC-CTGGCTATTCCATGCTG
* *
106342 AAAATTGTCTTAATATGTGAACTAAATCACCCTTCATTGAGAATATGAACAATCCTTGACCTTAG
452 AAAATTGTCTTAATATGTGAACTAAATCACCCTTCATTGAGAATATGAAAAACCCTTGACCTTAG
*
106407 ATGATAACAATAAGCTTCGAATGCCTTGAATGTGTGAATTAAGAGTTCTTCAACGACTTGTCACT
517 ATGATAACAATAAGCTTCGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAACGACTTGTCACT
106472 TGGATGAAGTTGAAAAGACTCTTCCTTGGTTCAAAGTCATCCAAATCATCCATGCATAAAATTAC
582 TGGATGAAGTTGAAAAGACTCTTCCTTGGTTCAAAGTCATCCAAATCATCCATGCATAAAATTAC
* * * * * *
106537 CGTAACAAAATTGCAGCCTGCACTGTCTTCAATAAAATGGTCATATCTCAAGCTCCCGTTATTAA
647 CGTAACAAAATTCCAGCATGCACTCTCTTCAATAAAATGATCATATCTCAAGCTCCCGATATCAA
* **
106602 ATTCAGGTGATTCAAAAGGAATTTGAAAGATAACAGATAGATGAATAATTCCCAATTGATTTATG
712 ATTCAGGTGATTAAAAAGGAATAGGAAAGATAACAGATAGATGAATAATTCCCAATTGATTTATG
** *
106667 GAATCAAACATGTCTGTATCTC
777 GAATCAAACAACTCTGTATCGC
* * * *
106689 ATCCAGAATCT-AATGAAATTCTGAATAATATTCTTGCATATGATGAAACCGTTCAACGAACGTG
1 ATCCAGAATCTGAA-GACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTG
* *
106753 TCACACAAGCTATATTTGATGAGCTAGGAACCAACACTATAACAAATGGAAATGATGACTACAAG
65 TCCCACAAGCTATATTTGATGAGCTAGGAACCAACACTATAACAAA-GGAAATGAAGACTACAAG
*
106818 ACTATCTTGAAGCCAATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTT
129 ACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTT
* *
106883 ATATATATTCAAAATGTGTATCTACAAATTATTCAAAAGGTG-CTATTTATAGTATTTCTAAGTA
194 ATATATATTCAAAATGTGTATCTACAAATTATCCAAAAGGTGCCTATTTATAGTATTTCTAAGCA
* *
106947 GCATATGAAAAGAATCAAAAGATGAAAATTTCCCATCAATTTAGCAATAAAATGCAGTTGAATGC
259 GCATATGAAAAGAATCAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAATGCACTTGAATGC
* * * *
107012 -TTTATATTTCTTATCTTCAACGTTGGCTGAATATTCTAGATCATTTT-GGGGTTGAATCTAGAC
324 ATTGA-ATTTCTTATCTTCAACGTTGACTAAATATTCTAGATCATTTTGGGGGATGAATCTAGAC
* * *
107075 AATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA-CTGGCTATTCCATGCTGA
388 AATTTAAAGATTAATTTGACCTTAATTTCGTCCAAGGGGTGGAAGACCTGGCTATTCCATGCTGA
* *
107139 AAATTGTCCTAATATGTATGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAA
453 AAATTGT-CT--TA-ATATGTGAACTAAATCA-CC--C-TT-CA-------TTG-AGAATATGAA
* * * *
107204 AAACCCTTGACTTTAGATGATAACAATCAGCTTTGATTGCCTTGAATGTGTGAATTAAGAGTCCT
501 AAACCCTTGACCTTAGATGATAACAATAAGCTTCGAATGCCTTGAATGTGTGAATTAAGAGTCCT
* * * *
107269 TCAAGGTCTTGTCATTTGGATGATGTTTG-AAAGACTC-TCCTTTGGTTCAAACG-CAT-CAAAC
566 TCAACGACTTGTCACTTGGATGAAG-TTGAAAAGACTCTTCC-TTGGTTCAAA-GTCATCCAAA-
* * * *
107330 TCATCCATGCAT-AAATCT-CACGTATCAAAATTCCAGCATGTAGTCTCTTCAATAAATTGATCA
627 TCATCCATGCATAAAAT-TAC-CGTAACAAAATTCCAGCATGCACTCTCTTCAATAAAATGATCA
* ** * *
107393 TATCTCAAGCTCCTGATATCGGATTGAGGTGATTAAAAAGGAATAGGAAAGATAAGAGATAGATG
690 TATCTCAAGCTCCCGATATCAAATTCAGGTGATTAAAAAGGAATAGGAAAGATAACAGATAGATG
*
107458 AATAATTCCCAATTGTTTTCA-GGAA-CTAAACAACTCTGTATCGC
755 AATAATTCCCAATTGATTT-ATGGAATC-AAACAACTCTGTATCGC
* * *
107502 ATCCAGAATCTGAAGACATTCTGACTGATATTCTTGCATCCGATGAAACCGTTCAACAAATGT-T
1 ATCCAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGT
* * * * *
107566 ACCCACTAGCTATATTTGATGAGATAGGAACAAACACTATAGAGAAAGGAAATGAAGACCACAAG
66 -CCCACAAGCTATATTTGATGAGCTAGGAACCAACACTATA-ACAAAGGAAATGAAGACTACAAG
* *
107631 ACTATGTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGTTGTTT
129 ACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATG-TT
107696 TATATATATTCAAAATGTGTATCTACAAATTATC
193 TATATATATTCAAAATGTGTATCTACAAATTATC
107730 ATCAATTTAT
Statistics
Matches: 901, Mismatches: 105, Indels: 55
0.85 0.10 0.05
Matches are distributed among these distances:
796 24 0.03
797 2 0.00
798 65 0.07
799 276 0.31
800 51 0.06
801 2 0.00
803 1 0.00
804 2 0.00
805 2 0.00
812 17 0.02
813 413 0.46
814 46 0.05
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (798 bp):
ATCCAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGT
CCCACAAGCTATATTTGATGAGCTAGGAACCAACACTATAACAAAGGAAATGAAGACTACAAGAC
TATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTAT
ATATATTCAAAATGTGTATCTACAAATTATCCAAAAGGTGCCTATTTATAGTATTTCTAAGCAGC
ATATGAAAAGAATCAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAATGCACTTGAATGCAT
TGAATTTCTTATCTTCAACGTTGACTAAATATTCTAGATCATTTTGGGGGATGAATCTAGACAAT
TTAAAGATTAATTTGACCTTAATTTCGTCCAAGGGGTGGAAGACCTGGCTATTCCATGCTGAAAA
TTGTCTTAATATGTGAACTAAATCACCCTTCATTGAGAATATGAAAAACCCTTGACCTTAGATGA
TAACAATAAGCTTCGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAACGACTTGTCACTTGGA
TGAAGTTGAAAAGACTCTTCCTTGGTTCAAAGTCATCCAAATCATCCATGCATAAAATTACCGTA
ACAAAATTCCAGCATGCACTCTCTTCAATAAAATGATCATATCTCAAGCTCCCGATATCAAATTC
AGGTGATTAAAAAGGAATAGGAAAGATAACAGATAGATGAATAATTCCCAATTGATTTATGGAAT
CAAACAACTCTGTATCGC
Found at i:108403 original size:736 final size:738
Alignment explanation
Indices: 106980--108456 Score: 2020
Period size: 736 Copynumber: 2.0 Consensus size: 738
106970 GAAAATTTCC
* *
106980 CATCAATTTAGCAATAAAATGCAGTTGAATGCTTTATATTTCTTATCTTCAACGTTGGCTGAATA
1 CATCAATTTAGCAATAAAATCCAATTGAATGCTTTATATTTCTTATCTTCAACGTTGGCTGAATA
* * * *
107045 TTCTAGATCATTTTGGGGTTGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAA
66 TTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTGAAGTTGGCATTAATTTCGTCCAA
* *
107110 GGGGTGGAAGACTGGCTATTCCATGCTGAAAATTGTCCTAATATGTATGTGAATTAAATCACCCT
131 GGGGTGGAAGACTCGCTATTCCATGCTGAAAATTGTCCTAATA--TATCTGAATTAAATCACCCT
* * *
107175 TCATTGCATGCTCCCTTGAAGAATATGAAAAACCCTTGACTTTAGATGATAACAATCAGCTTTGA
194 TCATTGCATGCTCCCATGAAGAATATGAAAAACCATTGACATTAGATGATAACAATCAGCTTTGA
* * * * * *
107240 TTGCCTTGAATGTGTGAATTAAGAGTCCTTCAAGGTCTTGTCATTTGGATGATGTTTGAAAGACT
259 ATACCTTGAATGTGTGAATTAAGAGTCCTTCAAGGTATTCTCACTTGGATGAAGTTTGAAAGACT
* **
107305 CTCCTTTGGTTCAAACGCATCAAACTCATCCATGCATAAATCTCACGTATCAAAATTCCAGCATG
324 CTCCCTTGGTT-------ATCAAACTCATCCATGCATAAATCTCACGTAAAAAAATTCCAGCATG
* * * * * *
107370 TAGTCTCTTCAATAAATTGATCATATCTCAAGCTCCTGATATCGGATTGAGGTGATTAAAAAGGA
382 CACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTAAAAAGGA
* * * *
107435 ATAGGAAAGATAAGAGATAGATGAATAATTCCCAATTGTTTTCAGGAACTAAACAACTCTGTATC
447 ATAGAAAAGATAAGAGATAGATGAATAATTCCAAATTGATTTCAGGAACGAAACAACTCTGTATC
* *
107500 GCATCCAGAATCTGAAGACATTCTGACTGATATTCTTGCATCCGATGAAACCGTTCAACAAATGT
512 ACATCCAGAATCTGAAGACATTCTGACTGATATTCTTGCATCCGATGAAACCGTTCAACAAACGT
* * * * *
107565 TACCCACTAGCTATATTTGATGAGATAGGAACAAACACTATAGAGAAAGGAAATGAAGACCACAA
577 GACCCACTAGCTATATATGATAAGATAGGAACAAACACTATAGAAAAAGAAAATGAAGACCACAA
* * * * * *
107630 GACTATGTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGTTGTT
642 GACTATCTTAAAGCCAATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCCCAAAGAT-AT
*
107695 TTATATATATTCAAAATGTGTATCTACAAATTAT
706 TT-TATATATTCAAAATGTGTATATACAAATTAT
* * * * * *
107729 CATCAATTTATCAATATAATCCAATTGAATGCTTTGTCTTTCTTATTTTCAATGTTGGCTGAATA
1 CATCAATTTAGCAATAAAATCCAATTGAATGCTTTATATTTCTTATCTTCAACGTTGGCTGAATA
*
107794 TTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTGAAGTTGGCATTAATTTCGTCCTA
66 TTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTGAAGTTGGCATTAATTTCGTCCAA
* * *
107859 GGGGTGGAAGACTCTCTATTCCATGCTGAAGATTGTCTTAATA-A-CTGAATTAAATCACCCTTC
131 GGGGTGGAAGACTCGCTATTCCATGCTGAAAATTGTCCTAATATATCTGAATTAAATCACCCTTC
* *
107922 ATTGCATGCTCCCATGAAGAATATGAACAACCATTGACATTAGATGATAACAATCATCTTTGAAT
196 ATTGCATGCTCCCATGAAGAATATGAAAAACCATTGACATTAGATGATAACAATCAGCTTTGAAT
107987 ACCTTGAATGTGTGAATTAAGAGTCCTTCAATGG-ATTCTCACTTGGATGAAG-TTGAAAAGACT
261 ACCTTGAATGTGTGAATTAAGAGTCCTTCAA-GGTATTCTCACTTGGATGAAGTTTG-AAAGACT
* *
108050 CTCCCTTGG-T-TCAAACTCATCCATGCATAAAATTTC-CGTAAAAAAATTCCAGCCTGCACTAT
324 CTCCCTTGGTTATCAAACTCATCCATGCAT-AAATCTCACGTAAAAAAATTCCAGCATGCACTAT
*
108112 CTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTAAAAAGGAATTGAA
388 CTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTAAAAAGGAATAGAA
* ** ** *
108177 AAGGTAAGAGATAGATGAATAATTCCAAATTGATTTCTTGAACGAAACATGTGTGTATCACATCC
453 AAGATAAGAGATAGATGAATAATTCCAAATTGATTTCAGGAACGAAACAACTCTGTATCACATCC
* * * * * * *
108242 AGATTTTGAAGATATTCTGACTGATATTCTTGCATCTGATGAAACTGTTCGACGAACGTGACCCA
518 AGAATCTGAAGACATTCTGACTGATATTCTTGCATCCGATGAAACCGTTCAACAAACGTGACCCA
* * * *
108307 CTAGCTATATATGATAAGCA-AGGAACCAACGA-TATA-ACAAAAGAAAATGAAGACTATAATAC
583 CTAGCTATATATGATAAG-ATAGGAACAAAC-ACTATAGA-AAAAGAAAATGAAGACCACAAGAC
* * *
108369 TATCTTAAAGCCAATAAGGTTCTACAAGAGAACAAGAATGAAAGTAACCTCCCAATGATATTTTA
645 TATCTTAAAGCCAATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCCCAAAGATATTTTA
108434 TATATTCAAAATGTGTATATACA
710 TATATTCAAAATGTGTATATACA
108457 TATGATCCCA
Statistics
Matches: 643, Mismatches: 79, Indels: 27
0.86 0.11 0.04
Matches are distributed among these distances:
734 24 0.04
735 4 0.01
736 308 0.48
737 8 0.01
744 4 0.01
745 136 0.21
746 3 0.00
749 156 0.24
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (738 bp):
CATCAATTTAGCAATAAAATCCAATTGAATGCTTTATATTTCTTATCTTCAACGTTGGCTGAATA
TTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTGAAGTTGGCATTAATTTCGTCCAA
GGGGTGGAAGACTCGCTATTCCATGCTGAAAATTGTCCTAATATATCTGAATTAAATCACCCTTC
ATTGCATGCTCCCATGAAGAATATGAAAAACCATTGACATTAGATGATAACAATCAGCTTTGAAT
ACCTTGAATGTGTGAATTAAGAGTCCTTCAAGGTATTCTCACTTGGATGAAGTTTGAAAGACTCT
CCCTTGGTTATCAAACTCATCCATGCATAAATCTCACGTAAAAAAATTCCAGCATGCACTATCTT
CAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTAAAAAGGAATAGAAAAG
ATAAGAGATAGATGAATAATTCCAAATTGATTTCAGGAACGAAACAACTCTGTATCACATCCAGA
ATCTGAAGACATTCTGACTGATATTCTTGCATCCGATGAAACCGTTCAACAAACGTGACCCACTA
GCTATATATGATAAGATAGGAACAAACACTATAGAAAAAGAAAATGAAGACCACAAGACTATCTT
AAAGCCAATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCCCAAAGATATTTTATATATT
CAAAATGTGTATATACAAATTAT
Found at i:111508 original size:808 final size:808
Alignment explanation
Indices: 109104--114821 Score: 7587
Period size: 808 Copynumber: 7.1 Consensus size: 808
109094 ACGAATCATG
* *
109104 TAACAAAAGAAAATGAAGACTACAGGACTATCTTGAAGCCGATAAGGTTCTACAAGAGAACAAGA
1 TAACAAAAGAAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGA
* * * * *
109169 ATGAAAGCAACCTCCCAATGATATTTTATATATTCAAAATGTGTATATA-AACATGATCCCAAAG
66 ATGAAAGAAACCTCTCAAAGATGTTTTATAAATTCAAAATGTGTATATACAA-ATGATCCCAAAG
* * * *
109233 GTGTCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCGAAAGATGAATATTTCTCATCAA
130 GTG-CTATTTATAGTATTTCAAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAA
* *
109298 TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATTTTTAAGGTTGACTGAATATTCTAG
194 TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGCTGAATATTCTAG
* * *
109363 ATCATTTTGGGGATGAATCTAGAGAATTTAAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTG
259 ATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGAGTG
* * *
109428 GAAGACTCTTTCTATTCCATGCT-AAAAGTTTTCTTAATAAGTGAATTAAATCACCCTTCATTTC
324 GAAGA--CTTGCTATTCCATGCTGAAAA-TTGTCTTAATAAGTGAATTAAATCACCCTTCATTGC
* * **
109492 ATGCTTCCC-TGAAGAATTTGAACAATCCTTGACTTTAGATGATAACAATCATATTTGAATGCCT
386 ATGC-TCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCT
* * * * * * *
109556 TGATTGTGTGAATTTAGAGTTCTTCAATGGGTTGTCACATGGATGAAGTTGAGAAGACTCTTCCT
450 TGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCT
* * *
109621 TGGTTCAAACTCATCAAAATCATCCATGCATAAAATT-ACCATAACAAAATTCCAGCATGCACTG
515 TGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCA-CGTAACAAAATTCCAGCCTGCACTG
* ** * * *
109685 TCTTCAATAAATTGATCATATAGCAAGCTCCCGATATTGGATTGAGGTGATTCAAAAGGCATTTG
579 TCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGG
* * * *
109750 AAAGATAACAGATAGATGAATAATTTCCAAATGATTTCTGGAACCAAACATGTCTGTATCACATC
644 AAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATCACATC
* * * * *
109815 CAGAATCTAAAGACATTCTGACTCATATTCTTGCATATGATGAAACCGTTCAACGAATGTAACCC
709 CAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCC
* * *
109880 ACTAGCTATATTTGATGAGCTAGGATCCAACACTA
774 ACTAGCTATATATGATGAGCTAGGAACAAACACTA
* * * * *
109915 TAACAAATGGAAATGATGACTACAAGACTATCTTGAAGCCAATAAATTTCTACAAGAGAACAAGA
1 TAACAAAAGAAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGA
* *
109980 ATTAAAGAAACCTCTCAAAGATGTTTTATATATATTCAAAATGTGTATCTACAAATGATCCCAAA
66 ATGAAAGAAACCTCTCAAAGATGTTTTATA-A-ATTCAAAATGTGTATATACAAATGATCCCAAA
* * *
110045 GGTGCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATTAAAAATTCCCATCAA
129 GGTGCTATTTATAGTATTTCAAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAA
* * * * *
110110 TTTACCAATAAAATGCACTTGAATGCTTTATCTTTCTTATCTTCAACGTTGGCGGAATATTCTAG
194 TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGCTGAATATTCTAG
*
110175 ATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGTAGTG
259 ATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGAGTG
* * *
110240 TAAGAGTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAATGAATTAAATCACCTTTCATTGCA
324 GAAGA--CTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCA
* * * *
110305 TGCTCCCTTGAGGAATATGAACAACCCTTAACATTAGATGAAAACAATCAGCTTTGAATGCCTTG
387 TGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTG
* * *
110370 AATGTGTGAATTAAGAGTCCTTCAATGTCTTTTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTG
452 AATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTG
* * * *
110435 GTTCAAA--C-T-----T-ATCCATGCATAAAATTCCCGT-ACCAAATTCCAGCGTGCACTATCT
517 GTTCAAACTCATCCAAATCATCCATGCATAAAATTCACGTAACAAAATTCCAGCCTGCACTGTCT
* * * *
110490 TTAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCCAAAGGCATTGAAAA
582 TCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAAA
* * *
110555 GATAATAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATCATATCCAT
647 GATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATCACATCCAG
* * * * * * *
110620 AATTTAAAAACATTCTGACTGATATTCATGCATCTGATGAAACCTTTCAATGAACGTGACCTACT
712 AATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACT
* *
110685 AGCTATATATGATGAGCTAGGAACAAACGCTG
777 AGCTATATATGATGAGCTAGGAACAAACACTA
* * *
110717 TAACAAAAGAAAATGAAGACTACAAGACTATCTTGAAGCTGATAAGGTTCTACAAGAGAATAAGA
1 TAACAAAAGAAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGA
* * * * *
110782 ACT-AATGAAACCTCTCAAAGATGTTTTATAAATTCAAAATGAGTATATGCATATGATCCAAAAG
66 A-TGAAAGAAACCTCTCAAAGATGTTTTATAAATTCAAAATGTGTATATACAAATGATCCCAAAG
* * *
110846 TTTCCTATTTATATTATTTCAAAGCAGCATATGAAAAGACTCAAAAGAAT-AAAAATTCTCATCA
130 -GTGCTATTTATAGTATTTCAAAGCAGCATATGAAAAGACTCAAAAG-ATGAAAAATTCTCATCA
** * * *
110910 ATTTAGCAATAAAAAACACTTGAATACTTTGCCTTTCTTATCTTTTAGGTTGGCTGAATATTCTA
193 ATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGCTGAATATTCTA
* * * * *
110975 GATCATTTTGAGGATAAATCCAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCGAAGGGGT
258 GATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGAGT
*
111040 GGAAGACTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTGATTGCAT
323 GGAAGACTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* * *
111105 GTTCCCTTGAAGAATATGAAAAACCCTTGACTTTAGATGATAACAATCAGCTTTGAACGCCTTGA
388 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGA
* *
111170 ATGTGTGAATTAAGAGTCCTTCAATTGCTTGTCACTTGGATGAAGTTTG-AAAGACTCTCCCTAG
453 ATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAG-TTGAAAAGACTCTCCCTTG
**
111234 GTTCAAACTCATCCAAATCATCCATGCAT-AAATCTCACGTAAC-AAATTCCAGCCTGTGCTGTC
517 GTTCAAACTCATCCAAATCATCCATGCATAAAAT-TCACGTAACAAAATTCCAGCCTGCACTGTC
** **
111297 TTCAATAAATTAATCATATCTCAAGCTCATGATATCGGATTGAGGTGATTCAAAAGGAATTGGAA
581 TTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAA
* ** * * * *
111362 AGATAAGAGATAGATAAATAATTCATAATTGATTTATGGAACCAAACATGTTTGTATCGCATCCA
646 AGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATCACATCCA
*
111427 GAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAATGTGACCCAC
711 GAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCAC
*
111492 TAGCTATATTTGATGAGCTAGGAACAAACACTA
776 TAGCTATATATGATGAGCTAGGAACAAACACTA
* * *
111525 TAGA-GAAAGGAAATGAAGACCACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAG
1 TA-ACAAAAGAAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAG
* * * * *
111589 AATGAAAGAAACCTCTCAAAAATGTTTTATATATATTCAAAATGGGTGTCTACAAATTATCCCAA
65 AATGAAAGAAACCTCTCAAAGATGTTTTATA-A-ATTCAAAATGTGTATATACAAATGATCCCAA
*
111654 AGGTGCTATTTATAGTATTT-ATAAGAAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATC
128 AGGTGCTATTTATAGTATTTCA-AAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATC
* * * *
111718 AATTTATCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGTTGATTATTCT
192 AATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGCTGAATATTCT
* * * *
111783 AGATCGTTTTGGGGATGAATCTAGACAATTT-AATGCTTAATTTGGCATTAATTTCGTCCTAGGC
257 AGATCATTTTGGGGATGAATCTAGACAATTTGAA-GCTTAATTTGGCCTTAATTTCGTCCAAGGA
* * * *
111847 GTGGAAGACACT-CTATTCCATGTTGAAAATTGTCTTAATAAATGAATTAAATCACCCCTCATTG
321 GTGGAAGAC-TTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTG
** * * * * *
111911 CATGCTCCGATGAAGAATATGAACAGCCATTGACATTAGATGATAACAATCATCTTTGAATACCT
385 CATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCT
* * * ** *
111976 TTAATGTGTGAATTAAGAGTCCTTCATTGGTTTCACACTTGGCTGAAGTTGAAAAGACTCTCCCT
450 TGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCT
*
112041 TGGTTC--A-T-A--C---TCATCCATGCATAAAATTTCA-GTAACAAAATTCCAGCCTGCACTA
515 TGGTTCAAACTCATCCAAATCATCCATGCATAAAA-TTCACGTAACAAAATTCCAGCCTGCACTG
* * *
112096 TCTTTAATATATCGATCATATCTCAAGCTCCCGATATCGGATTGAGATGATTCAAAAGGCAA-TG
579 TCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGG-AATTG
* * * *
112160 AAAAGATAAGAGATAGATGAATAATTCCCAATTGAATTCTTGACCCAAACATGTCTGTATCGCAT
643 GAAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATCACAT
* * * *
112225 CCAGATTTTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACAAACGTGACG
708 CCAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACC
* ** * * *
112290 CACTAGCTATATATCACAAGCAAGGAACCAACAATA
773 CACTAGCTATATATGATGAGCTAGGAACAAACACTA
* * *
112326 TAACAAAAGAAAATGAAGACTACAAGAATATCTTGAAGTCGATAAGGTTCTACAAGAGAACAAGA
1 TAACAAAAGAAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGA
* * * * *
112391 ACGAATGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACATATGATCCCAAAGG
66 ATGAAAGAAACCTCTCAAAGATGTTTTATAAATTCAAAATGTGTATATACAAATGATCCCAAAGG
* * *
112456 TTCCTATTTATATTATTTCAAAGCAGCATATGAAAAGACTCAAAAGAAT-AAAAATTCTAATCAA
131 -TGCTATTTATAGTATTTCAAAGCAGCATATGAAAAGACTCAAAAG-ATGAAAAATTCTCATCAA
*
112520 TTTAGCAATAAAAATG--CTTGAATGCTTTGCCTTTCTTATCTTTAAGGTTGGCTGAATATTCTA
194 TTTAGCAAT-AAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGCTGAATATTCTA
* *
112583 GATCATTATGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGT
258 GATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGAGT
112648 GGAAGACTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
323 GGAAGACTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* * * *
112713 GCTCCCTTGAAGAATATAAAAAACCCTTGACTTTTGATGATAACAATCAACTTTGAATGCCTTGA
388 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGA
* * **
112778 ATGTGTGAATTAAGAGTCCTTCAATGGCTTGCCACTTGGATGATGTTTG-AAAGACAATCCCTTG
453 ATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAG-TTGAAAAGACTCTCCCTTG
* * * *
112842 GTTTAAACTCATCCAAATCATCCATGCAT-AAATCTCACATAATAAAATTCCAGCCTGTACTGTC
517 GTTCAAACTCATCCAAATCATCCATGCATAAAAT-TCACGTAACAAAATTCCAGCCTGCACTGTC
* ** * *
112906 TTCAATAAATTGATCATATCTCAAGCTCCCGATATTAGATTTAGGTGCTTCAAAAGGAATTGGAA
581 TTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAA
* * *
112971 AGATAAGAGATAGATGAATAATTCCCAATTGATTT-TCAGAACCAAACAAGTCTGTATCACATTC
646 AGATAAGAGATAGATGAATAATTCCCAATTGATTTCT-TGAACCAAACATGTCTGTATCACATCC
* * * * *
113035 AGAATCTGATGATATTCTTACTGATATTCTTGCATCCGATGAAATCGTTCAACGAACGTGACCCA
710 AGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCA
*
113100 CTAGCTATATTTGATGAGCTAGGAACAAACACTA
775 CTAGCTATATATGATGAGCTAGGAACAAACACTA
* *
113134 TAGA-GAAAGAAAATGAAGACCACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAG
1 TA-ACAAAAGAAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAG
* *
113198 AATGATAGAAACCTCTCAAAGATGTTTTATATATATTCAAAATGTGTATCTACAAATGATCCCAA
65 AATGAAAGAAACCTCTCAAAGATGTTTTATA-A-ATTCAAAATGTGTATATACAAATGATCCCAA
*
113263 AGGTGCTATTTATAGTATTT-ATAAGTAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATC
128 AGGTGCTATTTATAGTATTTCA-AAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATC
* *
113327 AATTTATCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCT
192 AATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGCTGAATATTCT
* *
113392 AGATCATTTTGGGGGATGAATCTAGACAATTT-AATGCTTAATTTGGCATTAATTTCGTCCTAGG
257 AGATCATTTT-GGGGATGAATCTAGACAATTTGAA-GCTTAATTTGGCCTTAATTTCGTCCAAGG
113456 AGTGGAAGACTCT-CTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATT
320 AGTGGAAGACT-TGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATT
** * * * * * *
113520 GCATGCTCCGATGAAAAATATGAACAATCTTTGACATTAGATGATAACAATCATCTTTGAATACC
384 GCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCC
* * * * *
113585 TTGAATATGTGAATTAAGAGTCCTTCAATGGCTTCTCACTTGGCTGACGTTGAAAAGATTCTCCC
449 TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCC
* *
113650 TTGGTTCAAACTCATCC--AT-AT--AT--A-AAATTTC-CGTAACAAAATTCCAGCCTGCACTA
514 TTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCACGTAACAAAATTCCAGCCTGCACTG
* * *
113706 TCTTTAATAAATCGATCATATCTCAAGCTACCGATATCGGATTGAGGTGATTCAAAAGGAATTGA
579 TCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGG
* * *
113771 AAAGATAAGAGATAGATGAATAATTCCCAATTAATTTCTTGATCCAAACATGTCTGTATCGCATC
644 AAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATCACATC
* * * * * *
113836 CA-AATTTTGAATACATTCTGACTGATATACTTGCATCTGATGAAACCGTCCAAGGAATG-GACC
709 CAGAA-TCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACC
* * *
113899 CACTAGCTATATATGATAAGCAAGGAACCAAAGA-TA
773 CACTAGCTATATATGATGAGCTAGGAA-CAAACACTA
* *
113935 TAACAAAAGAAAATGAAGAATACAAGACTAT-TCTGAAGCCGATAAGGTTCTACAAGAGAACAAG
1 TAACAAAAGAAAATGAAGACTACAAGACTATCT-TGAAGCCGATAAAGTTCTACAAGAGAACAAG
* * * * * *
113999 AATGAACGCAACCTCTCAATGATATTTTATATATTCAAAATGTGTATATACATATGATCCCAAAG
65 AATGAAAGAAACCTCTCAAAGATGTTTTATAAATTCAAAATGTGTATATACAAATGATCCCAAAG
* * *
114064 GTGACTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTATCATAAA
130 GTG-CTATTTATAGTATTTCAAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAA
* * *
114129 TTTAGCAATAAAATGCACTT-AATGCTTTGTCTTTCTTATTTTTAAGGTTGACTTAATATTCTAG
194 TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGCTGAATATTCTAG
* * * * * *
114193 ACCATTTTGGGGATGAACCTAGAGAATTTAAAGCGTAATTTGGCCCTAATTTCGTCCAAGGAG-G
259 ATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGAGTG
* * * * *
114257 GAAGAATCTTGCTATTCCATGCTCAAATTTGTCATAATAAGTGAATTCAATCACCCTTTATTGCA
324 GAAG-A-CTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCA
* * *
114322 TGCACCCTTGAAGAATATGAACAATCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTA
387 TGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTG
* * * *
114387 AATGTGTGAATTAAGAGTTCTTCAATGGCTTGTCA-TGTGGATGAAGTTGAAAAGAGTCTTCCTG
452 AATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACT-TGGATGAAGTTGAAAAGACTCTCCCTT
*
114451 GGTTCAAACTCATCCAAATCATCCGTGCATAAAATTC-CTGTAACAAAATTCC-GACCTGCACTG
516 GGTTCAAACTCATCCAAATCATCCATGCATAAAATTCAC-GTAACAAAATTCCAG-CCTGCACTG
* * * * * *
114514 TCGTCAATAAATCAATTATATCTCAAGCTCCCGATATCGGATTGAGGTAATTCAAAAGGCATTAG
579 TCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGG
* * ** * * * * *
114579 AATGATGAGAGGCAGATGAATAATTTCCAATTGATATATT-------ACATGTTTTTATCACATC
644 AAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATCACATC
* *
114637 TAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCC
709 CAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCC
* *
114702 ACTAGCTATATATGATGAGATAGGAACCAACACTA
774 ACTAGCTATATATGATGAGCTAGGAACAAACACTA
* * * * *
114737 TAACAAAAGGAAATGAAGACTACAAGACTACCTTTATGCAGATAAAGTTCTACAAGAGAACAAGA
1 TAACAAAAGAAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGA
*
114802 ATGAAAGCAACCTCTCAAAG
66 ATGAAAGAAACCTCTCAAAG
114822 TATAATACCC
Statistics
Matches: 4290, Mismatches: 524, Indels: 195
0.86 0.10 0.04
Matches are distributed among these distances:
797 5 0.00
798 50 0.01
799 732 0.17
800 193 0.04
801 673 0.16
802 603 0.14
803 25 0.01
804 6 0.00
805 2 0.00
806 5 0.00
807 24 0.01
808 751 0.18
809 403 0.09
810 118 0.03
811 319 0.07
812 343 0.08
813 36 0.01
814 2 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (808 bp):
TAACAAAAGAAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGA
ATGAAAGAAACCTCTCAAAGATGTTTTATAAATTCAAAATGTGTATATACAAATGATCCCAAAGG
TGCTATTTATAGTATTTCAAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATT
TAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGCTGAATATTCTAGAT
CATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGAGTGGA
AGACTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCT
CCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGAATG
TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTC
AAACTCATCCAAATCATCCATGCATAAAATTCACGTAACAAAATTCCAGCCTGCACTGTCTTCAA
TAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAAAGATA
AGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATCACATCCAGAATC
TGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCT
ATATATGATGAGCTAGGAACAAACACTA
Found at i:116480 original size:24 final size:24
Alignment explanation
Indices: 116448--116493 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
116438 ATGAAATTGT
*
116448 ACATAGATGTTTTATACATCATGA
1 ACATAGATGTTTTAGACATCATGA
116472 ACATAGATGTTTTAGACATCAT
1 ACATAGATGTTTTAGACATCAT
116494 CAGGAAGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (24 bp):
ACATAGATGTTTTAGACATCATGA
Found at i:117319 original size:23 final size:23
Alignment explanation
Indices: 117246--117320 Score: 105
Period size: 23 Copynumber: 3.3 Consensus size: 23
117236 TGTTTTTATG
* *
117246 AATAGTAATAAACAGTACCCTGC
1 AATAGTAATGAACAATACCCTGC
* *
117269 TACAGTAATGAACAATACCCTGC
1 AATAGTAATGAACAATACCCTGC
*
117292 TATAGTAATGAACAATACCCTGC
1 AATAGTAATGAACAATACCCTGC
117315 AATAGT
1 AATAGT
117321 GTACCGATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.24
Consensus pattern (23 bp):
AATAGTAATGAACAATACCCTGC
Found at i:129101 original size:24 final size:25
Alignment explanation
Indices: 129050--129104 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
129040 TTTTCTTTTC
* *
129050 TTTCTTCTTTTTGAGTGCTGGAATT
1 TTTCTTCTTTTGGAGTGCTGGAACT
*
129075 TTTCTTCTTTTGGAGTGCTTG-ACT
1 TTTCTTCTTTTGGAGTGCTGGAACT
129099 TTTCTT
1 TTTCTT
129105 TGCTGATTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.09, C:0.15, G:0.18, T:0.58
Consensus pattern (25 bp):
TTTCTTCTTTTGGAGTGCTGGAACT
Found at i:136948 original size:802 final size:801
Alignment explanation
Indices: 135392--138053 Score: 3736
Period size: 802 Copynumber: 3.3 Consensus size: 801
135382 GGTGTTACAA
* * *
135392 AAAGATGTTTTATATATATTCAAAATGTGTATCTACAAATGATCCCAAATGTGCCTTTTTATAGT
1 AAAGATGTTTT-TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGT
* * * *
135457 ATTTCTAAGCAGCATAAGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATG
65 ATTTATAAGCAACATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATG
* * * **
135522 AAATTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTAAATATTCTAGAAAATTTT-GGGATG
130 CACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATG
*
135586 AATCTAGA-AACTTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTAC---CT
195 AATCTAGACAA-TTTGAAGCTTAATTTGGCCTTAATTTCGACCAAGGGGTGGAAGACT-CTTGCT
* * * * *
135647 ATTTCATGCTGAAAATTATCTTGATAAGTAAATTAAATCACCCTACATTGCATGCTACCTTGAAG
258 ATTCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAA-
* *
135712 AATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTCTGAAATA
322 AATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATCCCTTGAATGTATGAAATA
* *
135777 AGAGTCCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCATC
387 AGAGTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATC
* *
135842 CATGTATAAAATTCCCAAAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCA
452 CATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCA
* * *
135907 AGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCGTTAAAAAGATAAGACATAGATGAATAATT
517 AGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATAG-TGAATAATT
* * * * * * *
135972 CCAAATTGATTTCTTGAACCAAAAATGCCTGTATAAAATCAAGAACTTGAAGACATTTTGACTGA
581 CCCAATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCAGAATTTGAAGACATTCTGACTGA
*
136037 TATTGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATTTATGATGAGCTAGGA
646 TATTGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGA
136102 ACCAACT-CTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACA
711 ACCAA-TGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACA
*
136166 AGAGAACAAGAATTCTAGAAACCTCTC
775 AGAGAACAAGAATTATAGAAACCTCTC
*
136193 AAAGATG-TTTTATATATTCAAAATGTGTATATACAAATTATCCCAAAGGTGCCTATTTATAGTA
1 AAAGATGTTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
* *
136257 TTTATAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
66 TTTATAAGCAACATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGC
136322 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
* * * *
136387 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTAGACCAAGGGGTGGAACACTCTTGCTATT
196 ATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATT
* * *
136452 CCATGCTTAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAAAAT
261 CCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTG-AAAAT
*
136517 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATTCCTTGAATGTATGAAATAAGA
325 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATCCCTTGAATGTATGAAATAAGA
*
136582 GTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTAATCCAT
390 GTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCAT
136647 GCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGC
455 GCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGC
*
136712 TCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATGTGAATAATTCCC
520 TCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATA-GTGAATAATTCCC
*
136777 AATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGATAT
584 AATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCAGAATTTGAAGACATTCTGACTGATAT
136842 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACC
649 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACC
*
136907 AATGCTATAACAAAAGGAAAT-AACGACTACAAGAATATCTTGAAGCCGATAAAGTTCTACAAGA
714 AATGCTATAACAAAAGGAAATGAA-GACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
*
136971 GAAAAAGAATTATAGAAACCTCTC
778 GAACAAGAATTATAGAAACCTCTC
* *
136995 AAAGATG-TTTTATATATTCAAAATGTGTTTATACAAATGATCCCAAAGGTGTCTATTTATAGTA
1 AAAGATGTTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
* *
137059 TTTCTAAGTAACATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGC
66 TTTATAAGCAACATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGC
* *
137124 ACTTGAATGCTTTGTATTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
* * * *
137189 ATGTAGACAATTTTAAGCTTAATTTGGCTTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATT
196 ATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATT
* * *
137254 CCATGCAGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTAATTGCATGCTCCC-------T-
261 CCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAAATA
* * * *
137311 TG----A--C-T---TTT-GATAATAGCAATCAAT-TTTGAATCCCTTGAATGTGTGAATTAAGA
326 TGAACAACCCTTGACTTTAGATGATAACAATC-ATCTTTGAATCCCTTGAATGTATGAAATAAGA
* * * * * *
137364 -TTCCTTCAATGGCTTGTCTCATGGATGAAATTGAGAAGACTCTCCCTTT-TCTCCAACTCATCC
390 GTT-CTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGT-T-CAA---A--C
* * * * *** * *
137427 AAATCATCCATGCGTAAAATTCTCGTAACTAAATTGTTGCTTGCAATATCTTCAATAAATCGATC
447 ---TCATCCATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATC
* * * * * * * *
137492 ATATATCTAGCTCCCGATAACGGATTGGGGTGTTTCAAAAGGCATTGGAAAGATGAGAGATAGAG
509 ATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATAGTG
* * * * * * *
137557 AAATAATTCTCAATTGATTTCTGGAATCAAACATGTCTGTATCGCATCCAGAATTTGAATACAAT
574 -AATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCAGAATTTGAAGACATT
* * * * *
137622 CTGACT-ATATTCTTGAATCTGATGAAACCATTCAACGAACGTGACCCACTAGGTATATATGATG
638 CTGACTGATATTGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATG
* * * * *
137686 AGGTAGGAACCAAAGCTATAACAAAGGGAAATGAAGACTACAAGACTATCTTTAAGCTGATAAAG
703 AGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAG
* * * * *
137751 TTCAACAAGAGAACAAAAATTAAAGCAGCCTCTC
768 TTCTACAAGAGAACAAGAATTATAGAAACCTCTC
* * *
137785 AAAGATGTTTTTTATATATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCATTTTTATAGT
1 AAAGATG-TTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGT
* * * * * *
137850 ATTAATAAGCAGCATATGAAAATACTC--AATATGAAAAATTCTAATCAATTTAGCAATAAAATG
65 ATTTATAAGCAACATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATG
*
137913 CACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATG
130 CACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATG
* * *
137978 AATCTATACAATTTGAAGGTTAATTTGGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTTCTAT
195 AATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTAT
138043 TCCATGCTGAA
260 TCCATGCTGAA
138054 TATAGATTTA
Statistics
Matches: 1686, Mismatches: 150, Indels: 61
0.89 0.08 0.03
Matches are distributed among these distances:
781 3 0.00
782 78 0.05
783 8 0.00
786 2 0.00
787 1 0.00
788 1 0.00
789 1 0.00
790 309 0.18
791 170 0.10
792 73 0.04
793 2 0.00
794 1 0.00
799 162 0.10
800 58 0.03
801 12 0.01
802 802 0.48
803 3 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Consensus pattern (801 bp):
AAAGATGTTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
TTTATAAGCAACATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGC
ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
ATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATT
CCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAAATA
TGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATCCCTTGAATGTATGAAATAAGAG
TTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCATG
CATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCT
CCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATAGTGAATAATTCCCAA
TTGATTTCTTGAACCAAACATGTCTGTATAGAATCCAGAATTTGAAGACATTCTGACTGATATTG
TTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAA
TGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAA
CAAGAATTATAGAAACCTCTC
Found at i:139599 original size:791 final size:786
Alignment explanation
Indices: 138054--139898 Score: 2387
Period size: 791 Copynumber: 2.3 Consensus size: 786
138044 CCATGCTGAA
* * * *
138054 TATAGATTTAAAATGTGTATATACAAATTATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGAAG
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTG-CTATTTATAGTATTTCTAAGAA-
* * *
138119 CATATGAAAAGGCTCAAAATATGAAAAATTCTCATCAATTTAGCAATAAAATGAAATTGAATGCT
64 CATATGAAAAGACTCAAAATATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCT
* *
138184 TTGTCTTTCTTATCTTCAAGGTTGGCTTAATATTCTAGATAATTTTGGGATGAATCTAGA-AACT
129 TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGATGAATCTAGACAA-T
*
138248 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTC-TCTATTCCATGCTGAAAA
193 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTCTATTCCATGCAGAAAA
* *
138312 TTGTCTTGATAACTGAATTTAATCACCCTACATTGCATGCTACCTTGAAGAATCTGAACAACCCT
258 TTGTCTTAATAACTGAATTAAATCACCCTACATT--ATGCTA-C-T--AG-A-CT-----ACCCT
* *
138377 TGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTCTGAAATAAGTGTCCATCAATGG
310 TGACTTTAGATAATAACAATCATCTTTGAATCCCTTGAATGTCTGAAATAAGTGTCCATCAATGG
* * *
138442 CTTCTCACTTGGATGAAGCTGAAAAGACACTCTCTTGGTTCAAACTCATCCATGCATAAAATTCC
375 CTTCTCACATGGATGAAACTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCC
* * * *
138507 CATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCTTATCTCAAGCTCCCGATATCGG
440 CATAACAAAATTCCAGCCTGCAATATCTTCAATAAATCGATCATATATCAAGCTCCCGATAACGG
* *
138572 ATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATGTGAATAATTCCCAATTGATTTCTT
505 ATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATGAGAATAATTCCCAATTGATTTCTG
* * * * *
138637 GAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGATATTGTTGCATCTGA
570 GAACCAAACATGTCTGTATAGAATCCAGAATTTGAAGACAATCTGACTAATATTCTTGAATCTGA
* *
138702 TGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAACA
635 TGAAACCATTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAAAGCTATAACA
*
138767 AAAGGAAATAACGACTACAAGAATATCTTGAAGCCGATAAAGTTCTACAAGAGAA-AAAGAATTA
700 AAAGGAAATAACGACTACAAGAATATCTTGAAGCCGATAAAGTTCAACAAGAGAACAAA-AATTA
*
138831 TAGAAACCTCTCAAAGATG-TTT
764 AAGAAACCTCTCAAAGATGTTTT
138853 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGTCTATTTATAGTATTTCTAAGTAA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTG-CTATTTATAGTATTTCTAAG-AA
* *
138918 CATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGAATGCT
64 CATATGAAAAGACTCAAAATATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCT
* *
138983 TTGTATTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGAATGTAGACAAT
129 TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGG-ATGAATCTAGACAAT
* *
139048 TTTAAGCTTAATTTGGCTTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCAGAAA
193 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTT-CTATTCCATGCAGAAA
* *
139113 ATTGTCTTAATAAGTGAATTAAATCACCCTTA-A-T-TGC-A-T-G-CT-CCCTTGACTTTTGAT
257 ATTGTCTTAATAACTGAATTAAATCACCC-TACATTATGCTACTAGACTACCCTTGACTTTAGAT
* * * * * *
139170 AATAGCAATCAAT-TTTGAATCCCTTGAATGTGTGAATTAAGAT-TCCTTCAATGGCTTGTCTCA
321 AATAACAATC-ATCTTTGAATCCCTTGAATGTCTGAAATAAG-TGTCCATCAATGGCTTCTCACA
* * * * *
139233 TGGATGAAATTGAGAAGACTCTCCCTT-TTCTCCAACTCATCCAAATCATCCATGCGTAAAATTC
384 TGGATGAAACTGAAAAGACACTCCCTTGGT-T-CAA---A--C---TCATCCATGCATAAAATTC
* * * *** * *
139297 TCGTAACTAAATTGTTGCTTGCAATATCTTCAATAAATCGATCATATATCTAGCTCCCGATAACG
439 CCATAACAAAATTCCAGCCTGCAATATCTTCAATAAATCGATCATATATCAAGCTCCCGATAACG
* * * * * *
139362 GATTGGGGTGTTTCAAAAGGCATTGGAAAGATGAGAGATA-GAGAAATAATTCTCAATTGATTTC
504 GATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATGAG-AATAATTCCCAATTGATTTC
* * * *
139426 TGGAATCAAACATGTCTGTATCGCATCCAGAATTTGAATACAATCTGACTAATATTCTTGAATCT
568 TGGAACCAAACATGTCTGTATAGAATCCAGAATTTGAAGACAATCTGACTAATATTCTTGAATCT
* * *
139491 GATGAAACCATTCAACGAACGTGACCCACTAGGTATATATGATGAGGTAGGAACCAAAGCTATAA
633 GATGAAACCATTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAAAGCTATAA
* * * *
139556 CAAAGGGAAATGAA-GACTACAAGACTATCTTTAAGCTGATAAAGTTCAACAAGAGAACAAAAAT
698 CAAAAGGAAAT-AACGACTACAAGAATATCTTGAAGCCGATAAAGTTCAACAAGAGAACAAAAAT
* *
139620 TAAAGCAGCCTCTCAAAGATGTTTTT
762 TAAAGAAACCTCTCAAAGATG-TTTT
* * ** *
139646 TATATATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCATTTTTATAGTATTAATAAGCAG
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGC-TATTTATAGTATTTCTAAG-AA
* *
139711 CATATGAAAATACTC--AATATGAAAAATTCTAATCAATTTAGCAATAAAATGCACTTGAATGCT
64 CATATGAAAAGACTCAAAATATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCT
* *
139774 TTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTATACAAT
129 TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTT-GGGATGAATCTAGACAAT
* *
139839 TTGAAGGTTAATTTGGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTTCTATTCCATGC
193 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTC-TTCTATTCCATGC
139899 TGAATATAGA
Statistics
Matches: 923, Mismatches: 97, Indels: 60
0.85 0.09 0.06
Matches are distributed among these distances:
781 1 0.00
782 86 0.09
783 6 0.01
786 1 0.00
788 3 0.00
790 2 0.00
791 466 0.50
792 11 0.01
793 74 0.08
794 1 0.00
797 1 0.00
798 3 0.00
799 163 0.18
800 57 0.06
801 4 0.00
802 42 0.05
803 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (786 bp):
TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCTATTTATAGTATTTCTAAGAACA
TATGAAAAGACTCAAAATATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGATGAATCTAGACAATTTG
AAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTCTATTCCATGCAGAAAATTG
TCTTAATAACTGAATTAAATCACCCTACATTATGCTACTAGACTACCCTTGACTTTAGATAATAA
CAATCATCTTTGAATCCCTTGAATGTCTGAAATAAGTGTCCATCAATGGCTTCTCACATGGATGA
AACTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCATAACAAAATTCCAG
CCTGCAATATCTTCAATAAATCGATCATATATCAAGCTCCCGATAACGGATTGAGGTGATTCAAA
AGGAATTGAAAAGATAAGAGATATGAGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTG
TATAGAATCCAGAATTTGAAGACAATCTGACTAATATTCTTGAATCTGATGAAACCATTCAACAA
ACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAAAGCTATAACAAAAGGAAATAACGACT
ACAAGAATATCTTGAAGCCGATAAAGTTCAACAAGAGAACAAAAATTAAAGAAACCTCTCAAAGA
TGTTTT
Found at i:143268 original size:810 final size:808
Alignment explanation
Indices: 139903--143715 Score: 5209
Period size: 811 Copynumber: 4.8 Consensus size: 808
139893 CCATGCTGAA
* *
139903 TATAGATTTAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGAAG
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGAA-
* *
139968 CATATGAAAAGG-CTCAAAATATGAAAAATTCTCATCAATTTAGCAATAAAATGAAATTGAATGC
65 CATATG-AAAGGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGC
* *
140032 TTTGTCTTTCTTATCTTCAAGGTTGGCTTAATATTCTAGATAATTTT-GGGATGAATCTAGA-AA
129 TTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAA
140095 CTTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTC-T-CTATTCCATGCTGA
194 -TTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGA
* * * * * *
140158 AAATTGTCTTGATAACTGAATTTAATCACCCTACATTGCATGCTACCTTGAAGAATCTGAACAAC
258 AAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAAC
* * * * * *
140223 CCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTCTGAAATAAGTGTCCATCAA
323 CCTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAA
* * * *
140288 TGGCTTCTCACTTGGATGAAGCTGAAAAGACACTCTCTTGGTTC-AA---A--C---TCATCCAT
388 TGGCTTGTCACTTGGATGAAGTTGAAAA-ACTCTCCCTTGGTTCAAACTCATCCAAATCATCCAT
* *
140344 GCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCTTATCTCAAGC
452 GCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGC
* *
140409 TCCCGATAACAGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATAGATGAATAATTCCC
517 TCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCC
* * *
140474 AATTGATTTCTTGAACCAAACATGTTTGTATAGAATCAAGAA-CTTGAAGACATTCTGACTGATA
582 AATTGATTTC-TGAACCAAACATGTATGTATCGAATCCAGAATC-TGAAGACATTCTGACTGATA
* * *
140538 TTGTTGGATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAAC
645 TTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAAC
*
140603 CAACTCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
710 CAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
* * *
140668 GAACAAGAATTATAGAAACCTCTCAAAGATGTTT
775 GAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
* *
140702 TATATATTCAAAACGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGTAA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAG-AA
* * *
140767 CATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAAATTGAATGCT
65 CATATGAAAGGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCT
*
140832 TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAAT
130 TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAAT
* *
140897 TTTAAGCTTAATTTGGCTTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAA
195 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAA
140962 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATG----C----------T------CCC
260 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
141007 TTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
325 TTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* * * *
141072 GCTTGTCACTGGGATGAAATTGAGAAGACTCTCCCTTGGTTCAACCTCATCCAAATCATCCATGC
390 GCTTGTCACTTGGATGAAGTTGA-AAAACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
* * ** * * * *
141137 ACAAAATTCCCGTAATAAAATTCTTGCCTGCACTGTCTTCAGTAAATCGATCATATCTCTAGGTC
454 ATAAAATTCCCGTAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTC
* *
141202 CCGATATCGGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAA
519 CCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAA
* * * * * * *
141267 TTGAATTCCAGAACCAAACATGTCTATATCGAATCCATAATATGAAGACAGTCTGACTGATATTC
584 TTG-ATTTCTGAACCAAACATGTATGTATCGAATCCAGAATCTGAAGACATTCTGACTGATATTC
* * * * *
141332 TTGCATCTGATGAAACCGTTCAAAGAACGTGACCCACTAGCTATATTTGACGAGATAGGAAACAA
648 TTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAA
* * * * *
141397 CACTATAACAAAAGGAAATGACGAGTACAAGACTATCTTGAGGCCGATAAAGTTCTATAGGAGAA
713 CACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAA
*
141462 CAAGAATGAAAGCAACCTTTCAAAGATGTTTTT
778 CAAGAATGAAAGCAACCTCTCAAAGATG--TTT
* * *
141495 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCTAAGCAG
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAG-AA
* ** * * *
141560 CATAAGAAAATACTC--AATATGAAAAATTCTAATCAATTTAGCAATAAAATGCACTTGAATGCT
65 CATATGAAAGGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCT
* * * *
141623 TTTTCTTTCTTATCTTCAAGGTTGGTTGAATATTGTAGATCATTTTGGGGATGAATTTAGACAAT
130 TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAAT
* *
141688 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGCGAAAGACTCTTGCTATTCCATGCTGAAA
195 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAA
* *
141753 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGAATGCTCCCTTGAAGAATATGAACAACAC
260 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
* *
141818 TTGACTTTAGATTATAATAATCAGCTTTGAATGCCTCGAATGTGTGAATTAAGAGTCCTTCAATG
325 TTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* *
141883 GCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
390 GCTTGTCACTTGGATGAAGTTGA-AAAACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
* * ** *
141948 GTAAAAGTCCCGTAACAAAATTCTTGCCTGCACTATCTTCAATAAATCTATCATATCTCAAGCTC
454 ATAAAATTCCCGTAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTC
* * * *
142013 CCGATAACGGATT-AGGATGATTCAAAAGGCATTGGAAAGATGAGAGATAGA-GAAATAATTCTC
519 CCGATATCAGATTGAGG-TGATTCAAAAGGCATTGGAAAGATAAGAGATAGATG-AATAATTCCC
* * * * * *
142076 AATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTGTGAAGACATTATGACTAATAT
582 AATTGATTTCT-GAACCAAACATGTATGTATCGAATCCAGAATCTGAAGACATTCTGACTGATAT
** * * * *
142141 TCTTTAATCTAATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATCG-GCAAGAAAC
646 TCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGAT-GAGCTAGGAAC
* ** **
142205 TAATTCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGATGATAAAGTTCTACAAGA
710 CAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
* * *
142270 GAACAAGAATAAAAACAAACTCTCAAAGATGTTT
775 GAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
* * *
142304 TATTTATTCAAAATGTGTATATACAAATGATCCCAAAAGTGCCACTTTATAGTATTTCTAAGAAG
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGAA-
* * *** *
142369 CATATGAAAAGG-CTCAAAAGATGAAAAATTTTCATCACTTTTTAAATAAAATGCACTTGAATGC
65 CATATG-AAAGGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGC
* *
142433 TTTGTCTTTCTTATCTTCAAGGTTGGATGAATATTCTAGATTATTTTGGGGATGAATCTAGACAA
129 TTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAA
* * *
142498 TTTGAAGCTTAATTTGGCCTTAATTTTGACCAAGGGGCGGAAGACTCTTGCTATTCCATGCTGAA
194 TTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAA
* * *
142563 AATTGTCTTACTAAGTGAATTAAATCACCCTTTATTGCATTCTCCCTTGAAGAATATGAACAACC
259 AATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACC
* * * * * *
142628 CTTGACTTTAGATGATAACAATAATCTTTGAAGGCCTTGAATGTGTGATTTAAGAGTCATTCAAT
324 CTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAAT
* *
142693 GGCTTGTTACTTGGCTGAAGTTGAAAAACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
389 GGCTTGTCACTTGGATGAAGTTGAAAAACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
* * * *
142758 ATAAAATT-CCATAACAAAATTCCAACTTGCACTGTCTT-ATATAAATCGATCATATCTCAAGCT
454 ATAAAATTCCCGTAACAAAATTCCAGCCTGCACTATCTTCA-ATAAATCGATCATATCTCAAGCT
* * * *
142821 CCCGATATCAGATTGAGGTGATTAAAAAGGCTTTGGAAAGAAAAGAGATAGATGAATAATTCCTA
518 CCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCA
* * *
142886 AATGATTTCTGAAACCATACATGTATGTAT-GACATCTAGAATCTGAAGACATTCTGACTGATAT
583 ATTGATTTCTG-AACCAAACATGTATGTATCGA-ATCCAGAATCTGAAGACATTCTGACTGATAT
* * *
142950 TCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGCTAGCTATATACGATGAGCTAGGAAC
646 TCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAAC
* * * * * * *
143015 CAACACAATAACAAAAGGAAATGAAGACTACAAGACTACCTCGAAGCCGATAAGGTTGTATAAAA
710 CAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
143080 GAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
775 GAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
* * *
143114 TATATATTCAAAATGTGTATATACAGATGACCCCAAAGGCGCCTCTTTATAGTATTTCTAAGCAA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAG-AA
* * * *
143179 CATATGAAAGGACTCAATAGATGAAAAATTCCCATCAATTTAGCAAAAAAATGCAATTGTATGCT
65 CATATGAAAGGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCT
* *
143244 TTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAAT
130 TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAAT
* * * *
143309 TTGAAGCTAAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA--CTAGCTATTCTAAGC-GAAA
195 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAA
* *
143371 ATTGTCTTAATAAGTGAATTAAATCACTCTTCATTGCATGCTCCTTTGAAGAATATGAACAACCC
260 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
* * *
143436 ATGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAACGTGTGAATTAAGAGTCCTTCTATG
325 TTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* * * *
143501 GCTTTTAACTTGGCTGAAGTTGAAAAGACACTCCCTTGGTTC-AA---A--C---TCATCCATGC
390 GCTTGTCACTTGGATGAAGTTGAAAA-ACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
* *
143557 CTAAAATTCCCGTAACAAAATTCCATCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTC
454 ATAAAATTCCCGTAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTC
* * *
143622 CCGATATCAGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGACAGATGAATAATTTCCAA
519 CCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAA
143687 TTGATTTCTTGAACCAAACATGTATGTAT
584 TTGATTTC-TGAACCAAACATGTATGTAT
143716 ATGAAGAGCA
Statistics
Matches: 2659, Mismatches: 294, Indels: 121
0.86 0.10 0.04
Matches are distributed among these distances:
782 94 0.04
783 3 0.00
786 1 0.00
788 2 0.00
791 519 0.20
792 4 0.00
793 76 0.03
795 1 0.00
798 5 0.00
799 176 0.07
800 192 0.07
801 6 0.00
802 53 0.02
804 1 0.00
805 1 0.00
807 146 0.05
808 30 0.01
809 231 0.09
810 394 0.15
811 723 0.27
812 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31
Consensus pattern (808 bp):
TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGAAC
ATATGAAAGGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCTT
TGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATT
TGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAA
TTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCT
TGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
CTTGTCACTTGGATGAAGTTGAAAAACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCAT
AAAATTCCCGTAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCC
GATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATT
GATTTCTGAACCAAACATGTATGTATCGAATCCAGAATCTGAAGACATTCTGACTGATATTCTTG
CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACAC
TATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAA
GAATGAAAGCAACCTCTCAAAGATGTTT
Found at i:145373 original size:802 final size:785
Alignment explanation
Indices: 143713--145400 Score: 2374
Period size: 791 Copynumber: 2.1 Consensus size: 785
143703 AACATGTATG
* *
143713 TATATGAAGAGCAT-GGAACCAACTCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAA
1 TATATGACGAG-ATAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAA
* *
143777 GCCGATAAAGTTCTACAAGAGAACAAGAATTATAGAAACCTCTCAAATATGTTTTATATATTCAA
65 GCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAATATGTTTTATATATTCAA
*
143842 AATATGTATATACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCTAAGTAACATATGAAAAG
130 AATATGTATATACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCTAAGCAACATATGAAAAG
*
143907 ACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTCTTTCTT
195 ACTC-AAAGATGAAAAATTATAATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTCTTTCTT
* *
143972 ATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGTGAATAAATCTAGACAATTTTAAGCTTAA
259 ATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATAAATCTAGACAATTTGAAGCTTAA
*
144037 TTTGGCTTTAATTCCATCCAAGGGGTGGAAGACTATTGCTATTCCATGCTGAAAATTATCTTAAT
324 TTTGGCCTTAATTCCATCCAAGGGGTGGAAGACTATTGCTATTCCATGCTGAAAATTATCTTAAT
144102 AAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGACTTTAGATTATAACAATCAGCTTTGAA
389 AAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGACTTTAGATTATAACAATCAGCTTTGAA
* * * *
144167 TGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTGGGATGAAATTGAGAAGACTC
454 TGCCTTGAATGTGTGAAATAAGAGTCCTTCAATGGCTTCTCACTGGGATGAAATTGAAAAGACAC
* * * * *
144232 TTCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCCGTAACAAAATTTCTGCCTGC
519 TCCCTTGGTTCAAA--CA-CC--ATCATCCATGCACAAAATTCCCATAAAAAAATTCCAGCCTGC
* * *
144297 ACTGTCTTCAGTAAATCGATCATATCTCAAGCTCCCGATATCGGGATGGGGTGATTCAAAAGGCA
579 ACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGGATGAGGTGATTCAAAAGGCA
* * *
144362 TTGGAAAGATAAGAGATAGATGAATAATTTCCAATTGAGTTCCAGAACCAAACATGTCTATATCG
644 TTGGAAAGATAAGAGATAGATAAATAATTACCAATTGAGTTCCAGAACCAAACATATCTATATCG
* *
144427 AATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAAAGAACGTG
709 AATCCAGAATAGGAAGACATTCTGACTGATATTCTTGCATATGATGAAACCGTTCAAAGAACGTG
144492 ACCCACTAGCTA
774 ACCCACTAGCTA
* * *
144504 TATTTGACGAGATAGGAGA-CAACACTATAACAAAAGGAAATGACGAGTACAAGACTATCTTGAA
1 TATATGACGAGATAGGA-ACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAA
* * *
144568 GCCGATAAAGTTCTATAGGAGAACAAGAATGAAAGCAACCTCTCAAATATGTTTTTTATATATTC
65 GCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAATATG--TTTTATATATTC
* * *
144633 AAAATGTGTATCTACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCTAAGCAGCATATGAAA
128 AAAATATGTATATACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCTAAGCAACATATGAAA
* * * * *
144698 ATACTC-AATATGAAAAATTTTAATCAATTTAGGAATAAAATGCACTTGAATGCTTTGTCTTTCT
193 AGACTCAAAGATGAAAAATTATAATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTCTTTCT
* * * *
144762 TATCTTCAAGGTTGGTTGAATATTGTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTA
258 TATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATAAATCTAGACAATTTGAAGCTTA
* * *
144827 ATTTGGCCTTAATTTCGA-CCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTTTCTTA
323 ATTTGGCCTTAA-TTCCATCCAAGGGGTGGAAGACTATTGCTATTCCATGCTGAAAATTATCTTA
*
144891 ATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTA
387 ATAAGTGAATTAAATCACCCTTCATTGCATG----C----------T------CCCTTGACTTTA
* *
144956 GATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGAGTCCTTCAATGGGTTCTCAC
432 GATTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAAATAAGAGTCCTTCAATGGCTTCTCAC
* * *
145021 TTGGATGAAGTTGAAAAGACACTCCCTTGGTTC-AA-A-C-TCATCCATGCATAAAATTCCCATA
497 TGGGATGAAATTGAAAAGACACTCCCTTGGTTCAAACACCATCATCCATGCACAAAATTCCCATA
*
145082 AAAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTTCCGATATC-GGATA
562 AAAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGGAT-
* *
145146 GAGGTGATTCTAAAGGCATTGGAAAGATAAGAGATAGATAAATAATTACCAATTGA-TT-TATGA
626 GAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATAAATAATTACCAATTGAGTTCCA-G-
* * * *
145209 AACCAAACATATCTGTATC-ACATCTAGAATCGGAAGACATTCTGACTGATATTCTTGTATATGA
689 AACCAAACATATCTATATCGA-ATCCAGAATAGGAAGACATTCTGACTGATATTCTTGCATATGA
* * *
145273 TTAAACCGTTCAACGAACGTGACCCGCTAGCTA
753 TGAAACCGTTCAAAGAACGTGACCCACTAGCTA
* * * *
145306 TATATGATGAGCTAGTAACCAACACTATAACAAAAGGAAATGAAGACTAAAAGACTATCTTGAAG
1 TATATGACGAGATAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAG
145371 CCGATAAAGTTCTACAAGAGAACAAGAATG
66 CCGATAAAGTTCTACAAGAGAACAAGAATG
145401 TTTCTATGCA
Statistics
Matches: 795, Mismatches: 72, Indels: 49
0.87 0.08 0.05
Matches are distributed among these distances:
790 2 0.00
791 297 0.37
792 5 0.01
793 78 0.10
795 1 0.00
800 1 0.00
801 9 0.01
802 296 0.37
805 2 0.00
807 1 0.00
810 2 0.00
811 101 0.13
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.30
Consensus pattern (785 bp):
TATATGACGAGATAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAG
CCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAATATGTTTTATATATTCAAA
ATATGTATATACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCTAAGCAACATATGAAAAGA
CTCAAAGATGAAAAATTATAATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTCTTTCTTAT
CTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATAAATCTAGACAATTTGAAGCTTAATT
TGGCCTTAATTCCATCCAAGGGGTGGAAGACTATTGCTATTCCATGCTGAAAATTATCTTAATAA
GTGAATTAAATCACCCTTCATTGCATGCTCCCTTGACTTTAGATTATAACAATCAGCTTTGAATG
CCTTGAATGTGTGAAATAAGAGTCCTTCAATGGCTTCTCACTGGGATGAAATTGAAAAGACACTC
CCTTGGTTCAAACACCATCATCCATGCACAAAATTCCCATAAAAAAATTCCAGCCTGCACTATCT
TCAATAAATCGATCATATCTCAAGCTCCCGATATCGGGATGAGGTGATTCAAAAGGCATTGGAAA
GATAAGAGATAGATAAATAATTACCAATTGAGTTCCAGAACCAAACATATCTATATCGAATCCAG
AATAGGAAGACATTCTGACTGATATTCTTGCATATGATGAAACCGTTCAAAGAACGTGACCCACT
AGCTA
Found at i:147880 original size:517 final size:517
Alignment explanation
Indices: 146803--148293 Score: 2350
Period size: 517 Copynumber: 2.9 Consensus size: 517
146793 GCAAAAGTGT
* * * *
146803 CATCATTTTAGTAATTAAATGCACTTGAATGCTTTGTCTTTCATAACTTCAAGGTTGTCTGAATA
1 CATCATTTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCATATCTTCAAGGTTGTATGAATA
* * *
146868 TTCTAGATCATTTTGGGAATGAATCAAGACAATTTGCAGCTTAATTTGGCCTTAATTTCGTCCAT
66 TTCTAGATCATTTTGGGAATAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAA
146933 GGGGCGGAAGACTCTTGCTATTTCATGCTGGAAAA-TGTCTTAATAAGTGAATTAAATCACCTTT
131 GGGGCGGAAGACTCTTGCTATTTCATGCT-GAAAATTGTCTTAATAAGTGAATTAAATCACCTTT
*
146997 CATTGCATGCTCCCTTGAAGAATATGGACAACCCTTGACTTTAGATTG-TAACAATCATC-TTGT
195 CATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGA-TGATAACAATCATCTTTG-
* * *
147060 AATGACTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTT-TTCACTTGGCTGAATTTGAAAAGA
258 AATGCCTTGAATGTGTGAATTAAGAGTCATTCAATGGCTTGTT-ACTTGGCTGAAATTG-AAAGA
147124 CTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCAATAACAAAATTCCAGCCT
321 CTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCAATAACAAAATTCCAGCCT
*
147189 GCATTGTCTTATATAAATCGATCATATCTCAAGCTCCCGATACCAGATTGAGGTGATTCAAAAGG
386 GCACTGTCTTATATAAATCGATCATATCTCAAGCTCCCGATACCAGATTGAGGTGATTCAAAAGG
147254 CATTGGAAAGAAAAGAGATAGATGAATAATTCCCAAATGATTTCTGAAGCCAAATATGTATGTAT
451 CATTGGAAAGAAAAGAGATAGATGAATAATTCCCAAATGATTTCTGAAGCCAAATATGTATGTAT
147319 GA
516 GA
* *
147321 CATCATTTTATCAATAAAATGCACTTGAATGCTTTTTCTTTCATATCTTCAAGGTTGTATGAATA
1 CATCATTTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCATATCTTCAAGGTTGTATGAATA
* * *
147386 TTCTAGATCATTTTGGGAATAAATCAAGACAATTTGAAGCTTAATTTGGCTTTAATTTTGACCAA
66 TTCTAGATCATTTTGGGAATAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAA
* * * *
147451 GGGGCGGAAGACTCTTGCTATTCCATGCTGAAAATTATCTTACTAAGTGAATTAAATCACCCTTC
131 GGGGCGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTC
* * * * *
147516 ATTGCATTCTCCTTTGAAGAATATGAACAACCCTTAACTTTAGATGATAACAATAATCTTTGAAG
196 ATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAAT
* * *
147581 GCCTTGAATGTGTGATTTAAGAGTCATTCAATGGCTTGTTACTTGGCTGAAGTTGAAACACTCTC
261 GCCTTGAATGTGTGAATTAAGAGTCATTCAATGGCTTGTTACTTGGCTGAAATTGAAAGACTCTC
*
147646 CCATGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCAATAACAAAATTCCAGCCTGCACT
326 CCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCAATAACAAAATTCCAGCCTGCACT
147711 GTCTTATATAAATCGATCATATCTCAAGCTCCCGATACCAGATTGAGGTGATTCAAAAGGCATTG
391 GTCTTATATAAATCGATCATATCTCAAGCTCCCGATACCAGATTGAGGTGATTCAAAAGGCATTG
147776 GAAAGAAAAGAGATAGATGAATAATTCCCAAATGATTTCTGAAGCCAAATATGTATGTATGA
456 GAAAGAAAAGAGATAGATGAATAATTCCCAAATGATTTCTGAAGCCAAATATGTATGTATGA
147838 CATCATTTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCATATCTTCAAGGTTGTATGAATA
1 CATCATTTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCATATCTTCAAGGTTGTATGAATA
*
147903 TTCTATATCATTTTGGGAATAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCC-A
66 TTCTAGATCATTTTGGGAATAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAA
* * *
147967 TGGGTGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTT
131 GGGGCGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTC
* * *
148032 ATTGCATGCTCCCTTGAAGATTATGAAAAACCCTTGACTTTAGATGATAACAAATCACCTTTGAA
196 ATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC-AATCATCTTTGAA
* * * * *
148097 TGCCTTGAATGTCTGAATTAAGAGTCATTCAATGGCTTGTCAATTGGATGAAATTGAGATGACTC
260 TGCCTTGAATGTGTGAATTAAGAGTCATTCAATGGCTTGTTACTTGGCTGAAATTGA-AAGACTC
* * * ** *
148162 TCCTTTGGTTCAAACTGATCCAAATCATCCATGCGTAAAATTCCCGTAACAAAATT-CATGCCTA
324 TCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATT-CAATAACAAAATTCCA-GCCTG
* *** *
148226 CACTGTCTTCA-ATAAATCGATCCTATCTCAAGC-CCTCGATATTGGATTGTGGTGATTCAAAAG
387 CACTGTCTT-ATATAAATCGATCATATCTCAAGCTCC-CGATACCAGATTGAGGTGATTCAAAAG
148289 GCATT
450 GCATT
148294 CAAAAGATAA
Statistics
Matches: 893, Mismatches: 70, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
516 105 0.12
517 389 0.44
518 320 0.36
519 78 0.09
520 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (517 bp):
CATCATTTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCATATCTTCAAGGTTGTATGAATA
TTCTAGATCATTTTGGGAATAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAA
GGGGCGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTC
ATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAAT
GCCTTGAATGTGTGAATTAAGAGTCATTCAATGGCTTGTTACTTGGCTGAAATTGAAAGACTCTC
CCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCAATAACAAAATTCCAGCCTGCACT
GTCTTATATAAATCGATCATATCTCAAGCTCCCGATACCAGATTGAGGTGATTCAAAAGGCATTG
GAAAGAAAAGAGATAGATGAATAATTCCCAAATGATTTCTGAAGCCAAATATGTATGTATGA
Found at i:150156 original size:394 final size:394
Alignment explanation
Indices: 149428--150160 Score: 1114
Period size: 394 Copynumber: 1.9 Consensus size: 394
149418 TATGAAAAGA
* * * *
149428 CTCAAAAGATGGAAAATTGTCATCATTTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCATA
1 CTCAAAAGATGAAAAATTCTCATCATTTTAGAAATAAAATGCACTTGAATGCTTTGTATTTCATA
** **
149493 TCTTCAAGGTTGTCTGAATATTCTAGATCATTTTAGGAATGAATCAAGACAATTTTCAGCTTAAT
66 TCTTCAAGGTTGGATGAATATTCTAGATCATTTTAGGAATGAATCAAGACAATTTGAAGCTTAAT
* * * * * *
149558 TTGGCCTTAATTTCGTCCATGGGGTGGAAGACTCTTGCTATTTCATGCTGAAAAATGTATTAATA
131 TTGGCCTTAATTTCGACCAAGGCGCGGAAGACTCTTGCTATTCCATGCAGAAAAATGTATTAATA
* *
149623 AGTGAATTAAATCACCTTTCATTGCATGCTCCCTTGAAGAATATGGACAACCCTTGACTTTAGAT
196 AGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
* * * *
149688 TATAACAATCATATTGTAATGACTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTTTCACTTG
261 GATAACAATAATATTGTAAGGACTTGAATGTGTGAATTAAGAGTCATTCAATGGCTTTTCACTTG
149753 GCTGAAGTTGAAAAGACTATCCCTTGGTTCAAACTCATCCATGCACTTGAATGCTTTTGAAATAA
326 GCTGAAGTTGAAAAGACTATCCCTTGGTTCAAACTCATCCATGCACTTGAATGCTTTTGAAATAA
149818 AATG
391 AATG
* *
149822 CTCAAAAGATGAAAAATTCTCATCCCTTTT-GAAATAAAATGCACTTGAATGCTTTGTATTTCTT
1 CTCAAAAGATGAAAAATTCTCAT-CATTTTAGAAATAAAATGCACTTGAATGCTTTGTATTTCAT
* * *
149886 ATCTTCAAGGTTGGATGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAA
65 ATCTTCAAGGTTGGATGAATATTCTAGATCATTTTAGGAATGAATCAAGACAATTTGAAGCTTAA
* * *
149951 TTTGGCCTTAATTTTGACCAAGGCGCGGAAGACTCTTGCTATTCCATGCAG-AAAATCGTCTTAC
130 TTTGGCCTTAATTTCGACCAAGGCGCGGAAGACTCTTGCTATTCCATGCAGAAAAAT-GTATTAA
*
150015 TATGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAG
194 TAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAG
* * *
150080 ATGATAACAATAATCTT-TGAAGGCCTTGAATGTGTGATTTAAGAGTCATTCAATGGCTTGTT-A
259 ATGATAACAATAATATTGT-AAGGACTTGAATGTGTGAATTAAGAGTCATTCAATGGCTT-TTCA
150143 CTTGGCTGAAGTTGAAAA
322 CTTGGCTGAAGTTGAAAA
150161 ACCCTCAAAC
Statistics
Matches: 303, Mismatches: 32, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
393 6 0.02
394 290 0.96
395 7 0.02
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (394 bp):
CTCAAAAGATGAAAAATTCTCATCATTTTAGAAATAAAATGCACTTGAATGCTTTGTATTTCATA
TCTTCAAGGTTGGATGAATATTCTAGATCATTTTAGGAATGAATCAAGACAATTTGAAGCTTAAT
TTGGCCTTAATTTCGACCAAGGCGCGGAAGACTCTTGCTATTCCATGCAGAAAAATGTATTAATA
AGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
GATAACAATAATATTGTAAGGACTTGAATGTGTGAATTAAGAGTCATTCAATGGCTTTTCACTTG
GCTGAAGTTGAAAAGACTATCCCTTGGTTCAAACTCATCCATGCACTTGAATGCTTTTGAAATAA
AATG
Found at i:151361 original size:798 final size:799
Alignment explanation
Indices: 149822--151738 Score: 2615
Period size: 798 Copynumber: 2.4 Consensus size: 799
149812 AAATAAAATG
** * * *
149822 CTCAAAAGATGAAAAATTCTCATCCCTTTTGAAATAAAATGCACTTGAATGCTTTGTATTTCTTA
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
* *
149887 TCTTCAAGGTTGGATGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
66 TCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAAT
* * * * * * *
149952 TTGGCCTTAATTTTGACCAAGGCGCGGAAGACTCTTGCTATTCCATGCAGAAAATCGTCTTACTA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGAC-CTTGCTATTCTATGCAGAAAATTGTCTTAATA
* *
150017 TGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
195 AGTGAATTAAATCA-CTTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
* * * * * *
150082 GATAACAATAATCTTTGAAGGCCTTGAATGTGTGATTTAAGAGTCATTCAATGGCTTGTTACTTG
259 GATAACAATCACCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCATTCAATGGCTTCTAACTTG
*
150147 GCTGAAGTTGAAAAACCCTCAAACTCATCCAAATAATCCATGCATAAAATTCCATAACAAAATTC
324 GCTGAAGTTGAAAAACACTCAAACTCATCCAAATAATCCATGCATAAAATTCCATAACAAAATTC
* * * * *
150212 CCGCCTGCACTGTCTTATATAAATCGATCATATCTCAAGCTCCCGATATCATATTGAGGTGATTC
389 CAGCCTGCACTATCTTATAAAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTA
*
150277 AAAAGGCATTAGAAAGAAAAGAGATAGATGAATAATTCCCAAATGATTTCTGAAACCAAACATGT
454 AAAAGGCATTAGAAAGAAAAGAGATAGATGAATAATTCCCAAATGATATCTGAAACCAAACATGT
*
150342 ATGTATGACATCTAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATTAAAATCGTTCA
519 ATGTATGACATCTAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATTAAAATCATTCA
* * *
150407 ACGAACGTGACCCGCTAGCGATATACGACGAGCTAGGAACCAACACTATAACAAAAAAAAATGAA
584 ACGAAAGTGACCCACTAGCGATATACGACAAGCTAGGAACCAACACTATAACAAAAAAAAATGAA
* * *
150472 GACTACAAGACTACCTCTAAGCCGATAAGGTTGTACAAAAGAACAAGAATGAAAGCAACCTCTCA
649 GACTACAAGACTACCTCTAAGACGATAAAGTTCTACAAAAGAACAAGAATGAAAGCAACCTCTCA
* * *
150537 AAGATGTTTTATATATTCAAAATGTGTATATACAGATGATCCCAAAGGAGCCTCTTTATATTATT
714 AAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGAGCCTCTTTATAGTATA
*
150602 TCTAAGCAACATATGAAAGGA
779 TCTAAGCAACATATGAAAAGA
* * * *
150623 CTCAAAACATGAAAAATTCCCATCAATTTAGCAATAAAATGCGA-TTGTATGCTTTTTCTTTCTT
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGC-ACTTGAATGCTTTGTCTTTCTT
* *
150687 ATCTTTAAGGTTGGTTGAATATTCTAGATCATTTTGGGAACGAATCTAGACAATTTGAAGCTTAA
65 ATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAA
* *
150752 TTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA-CTAGCTATTCTAAGC-GAAAATTGTCTTAATA
130 TTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACCTTGCTATTCTATGCAGAAAATTGTCTTAATA
* *
150815 AGTGAATTAAATCACTATTCATTGCATGCTCCCTTAAAGAATATGAACAACCCTTGACTGTAGAT
195 AGTGAATTAAATCACT-TTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
* * * * *
150880 TATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCTATTGCTTCTAACTTG
259 GATAACAATCACCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCATTCAATGGCTTCTAACTTG
** ** * * * *
150945 GCTGAAGTTGAAAAGACACTCCCA-TGGTTCAAACTCATCCATGCCTAAAATTCCCGTAACAAAA
324 GCTGAAGTTGAAAA-ACACTCAAACTCATCCAAA-TAATCCATGCATAAAATT-CCATAACAAAA
* * * *
151009 TTCCATCCTGCACTATCTTCA-AAAAATCGATCATATCTCAAGCTCCCGTTTTCGGATTGAGGTG
386 TTCCAGCCTGCACTATCTT-ATAAAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTG
*
151073 ATTAAAAAGGCATT-GAAAAGATAAGAGATAGATGAATAATT-CCAAATTGATATCATG-AA-CA
450 ATTAAAAAGGCATTAG-AAAGAAAAGAGATAGATGAATAATTCCCAAA-TGATATC-TGAAACCA
* * * * *
151134 AATCATGTCTGTAT-AGCAT-TAGGAATTTGAAGATATTCTGACTGATATTGTTGCATCTGA-TG
512 AA-CATGTATGTATGA-CATCTA-GAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATTA
* * * * *
151196 AAATTATTCAACGAAAGTGACCCACTAGCTATATATGATAAGCTAGGAACCAACGCTATAACAAA
574 AAATCATTCAACGAAAGTGACCCACTAGCGATATACGACAAGCTAGGAACCAACACTATAACAAA
** * * *
151261 ATTAAATGAAGACTACAAGACTATCT-TGAAGATGATAAAGTTCTAC-AAAGAACAAGAATTAAA
639 AAAAAATGAAGACTACAAGACTACCTCT-AAGACGATAAAGTTCTACAAAAGAACAAGAATGAAA
** *
151324 GTGACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTC
703 GCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGAGCCTC
*
151389 TTTATAGTATATCTAAGTAACATATGAAAAGA
768 TTTATAGTATATCTAAGCAACATATGAAAAGA
* * * * * *
151421 CTCAAAAGATGGAAAATTGTCATCATTTTAGCAATTAAATGCACCTGAATGCTTTGTCTTTCATA
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
* * * *
151486 TCTTCAAGATT-GTCTGAATATTCTAGTTCATTTTGGGAATTAATCAAGACAATTTGAAGCTTAA
66 TCTTCAAGGTTGGT-TGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAA
* * * *
151550 TTTGGCCTTAATTTCTTCCATGGGGTGGAAGACTCTTGTTATT-TCATGCTGAAAATTGTCTTAA
130 TTTGGCCTTAATTTCGTCCAAGGGGTGGAAGAC-CTTGCTATTCT-ATGCAGAAAATTGTCTTAA
*
151614 TAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAG
193 TAAGTGAATTAAATCA-CTTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAG
*
151679 ATGATAACAAATCACCTTTGAATGCCTTGAATGTCTGAATTAAGAGTCATTCAATGGCTT
257 ATGATAAC-AATCACCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCATTCAATGGCTT
151739 GTCAATTGGA
Statistics
Matches: 979, Mismatches: 116, Indels: 41
0.86 0.10 0.04
Matches are distributed among these distances:
797 4 0.00
798 392 0.40
799 142 0.15
800 167 0.17
801 225 0.23
802 49 0.05
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31
Consensus pattern (799 bp):
CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
TCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAAT
TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACCTTGCTATTCTATGCAGAAAATTGTCTTAATAA
GTGAATTAAATCACTTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGA
TAACAATCACCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCATTCAATGGCTTCTAACTTGGC
TGAAGTTGAAAAACACTCAAACTCATCCAAATAATCCATGCATAAAATTCCATAACAAAATTCCA
GCCTGCACTATCTTATAAAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTAAA
AAGGCATTAGAAAGAAAAGAGATAGATGAATAATTCCCAAATGATATCTGAAACCAAACATGTAT
GTATGACATCTAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATTAAAATCATTCAAC
GAAAGTGACCCACTAGCGATATACGACAAGCTAGGAACCAACACTATAACAAAAAAAAATGAAGA
CTACAAGACTACCTCTAAGACGATAAAGTTCTACAAAAGAACAAGAATGAAAGCAACCTCTCAAA
GATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGAGCCTCTTTATAGTATATC
TAAGCAACATATGAAAAGA
Found at i:154318 original size:791 final size:794
Alignment explanation
Indices: 149822--156135 Score: 7473
Period size: 791 Copynumber: 8.0 Consensus size: 794
149812 AAATAAAATG
* ** * * *
149822 CTCAAAAGATGAAAAATTCTCATCCCTTTTGAAATAAAATGCACTTGAATGCTTTGTATTTCTTA
1 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTATTTCTTA
* *
149887 TCTTCAAGGTTGGATGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAAT
* * * * * * *
149952 TTGGCCTTAATTTTGACCAAGGCGCGGAAGACTCTTGCTATTCCATGCAGAAAATCGTCTTACTA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
*
150017 TGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
196 AGTGAATTAAATCACCCTTCATTGCATGCT-CC---------AT-----A--CTTGACTTTAGAT
* * * * * * *
150082 GATAACAATAATCTTTGAAGGCCTTGAATGTGTGATTTAAGAGTCATTCAATGGCTTGTTACTTG
244 TATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTG
* * * * * *
150147 GCTGAAGTTGA-AA-A---ACCC-----TCAAACTCATCCAAATAATCCATGCATAAAATT-CCA
309 GATGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCCG
* * **
150201 TAACAAAATTCCCGCCTGCACTGTCTT-ATATAAATCGATCATATCTCAAGCTCCCGATATCATA
374 TAACAAAATTCCTGCCTGCACTATCTTCA-ATAAATCGATCATATCTCAAGCTCCCGATATCGGA
* * * * *
150265 TTGAGGTGATTCAAAAGGCATTAGAAAGAAAAGAGATAGATGAATAATTCCCAAATGA-TTTCTG
438 TTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTGAGTTCCAG
* * * *
150329 AAACCAAACATGTATGTAT-GACATCTAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTG
503 -AACCAAACATGTCTATATCGA-ATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCTG
* * * * * * *
150393 ATTAAAATCGTTCAACGAACGTGACCCGCTAGCGATATACGACGAGCTAGGAACCAACACTATAA
566 A-TGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAA
** * * * *
150458 CAAAAAAAAATGAAGACTACAAGACTACCTCT-AAGCCGATAAGGTTGTACAAAAGAACAAGAAT
630 CAAAAGGAAATGAAGACTACAAGACTATCT-TGAAGCCGATAAAGTTCTACAAGAGAACAAGAAT
* * *
150522 GAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAGATGATCCCAAAGGAG
694 TAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTG
* * * *
150587 CCTCTTTATATTATTTCTAAGCAACATATGAAAGGA
759 CCTATTTATAGTATTTCTAAGTAACATATGAAAAGA
* ** * * * *
150623 CTCAAAACATGAAAAATTCCCATCAATTTAGCAATAAAATGCGA-TTGTATGCTTTTTCTTTCTT
1 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATG-AACTTGAATGCTTTGTATTTCTT
* * *
150687 ATCTTTAAGGTTGGTTGAATATTCTAGATCATTTTGGGAACGAATCTAGACAATTTGAAGCTTAA
65 ATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAA
* * *
150752 TTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA--CTAGCTATTCTAAGC-GAAAATTGTCTTAAT
130 TTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAAT
** *
150814 AAGTGAATTAAATCACTATTCATTGCATGCTCCCTTAAAGAATATGAACAACCCTTGACTGTAGA
195 AAGTGAATTAAATCACCCTTCATTGCATGCT-CC---------AT-----A--CTTGACTTTAGA
* * * *
150879 TTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCTATTGCTTCTAACTT
243 TTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTT
* * * * * *
150944 GGCTGAAGTTGAAAAGACACTCCCATGGTTCAAACTCATCC--AT--GCC-T----AAAATTCCC
308 GGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCC
* * *
151000 GTAACAAAATTCCAT-CCTGCACTATCTTCAAAAAATCGATCATATCTCAAGCTCCCGTTTTCGG
373 GTAACAAAATTCC-TGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGG
* * *
151064 ATTGAGGTGATTAAAAAGGCATTGAAAAGATAAGAGATAGATGAATAATTCCAAATTGA-TAT-C
437 ATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTGAGT-TCC
* * * * * * *
151127 ATGAA-CAAATCATGTCTGTATAGCAT-TAGGAATTTGAAGATATTCTGACTGATATTGTTGCAT
501 A-GAACCAAA-CATGTCTATATCGAATCCA-GAATATGAAGACATTCTGACTGATATTCTTGCAT
*** * *
151190 CTGATGAAATTATTCAACGAAA-GTGACCCACTAGCTATATATGATAAGCTAGGAACCAACGCTA
563 CTGATGAAACCGTTCAAC-AAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTA
** **
151254 TAACAAAATTAAATGAAGACTACAAGACTATCTTGAAGATGATAAAGTTCTACAA-AGAACAAGA
627 TAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGA
**
151318 ATTAAAGTGACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGG
692 ATTAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGG
* *
151383 TGCCTCTTTATAGTATATCTAAGTAACATATGAAAAGA
757 TGCCTATTTATAGTATTTCTAAGTAACATATGAAAAGA
* * * * * * * *
151421 CTCAAAAGATGGAAAATTGTCATCATTTTAGCAATTAAATGCACCTGAATGCTTTGTCTTTCATA
1 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTATTTCTTA
* * * * *
151486 TCTTCAAGATTGTCTGAATATTCTAGTTCATTTTGGGAATTAATCAAGACAATTTGAAGCTTAAT
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAAT
* * * *
151551 TTGGCCTTAATTTCTTCCATGGGGTGGAAGACTCTTGTTATTTCATGCTGAAAATTGTCTTAATA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
* *
151616 AGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
196 AGTGAATTAAATCACCCTTCATTGCATGCT-CC---------AT-----A--CTTGACTTTAGAT
* * * * *
151681 GATAACAAATCACCTTTGAATGCCTTGAATGTCTGAATTAAGAGTCATTCAATGGCTTGTCAATT
244 TATAAC-AATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTT
* * * * *
151746 GGATGAAATTGAGATGACTCTCCTTTGGTTCAAACTGATCCAAATAATCCATGCATAAAATTCCC
308 GGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCC
* * * * * * * ** * ** *
151811 GTAACAAAATTCATGCCTGCTAGGTATATATGATTCAAA-AG-GCAT-TCGAAAGAT-AAGAAAT
373 GTAACAAAATTCCTGCCTGC-A-CTATCT-TCAAT-AAATCGATCATATCTCAAGCTCCCGATAT
* ** * ** *** ** * * * *
151872 ---ATAGAAATAATTCTTAATTTATTTATGG-AA-CCAA-ACA-AGTCTGTATCATAT-CC-A--
434 CGGATTGAGGTGATTCAAAAGGCA--T-TGGAAAGATAAGAGATAG-ATGAATAAT-TCCCAATT
* * * *** * *
151926 GAGTT--TGAA--GAA-AT-TC-ATA-CTAAT-----AT-TCTTG-CA-TATGA-TGA-A-AC--
494 GAGTTCCAGAACCAAACATGTCTATATCGAATCCAGAATATGAAGACATTCTGACTGATATTCTT
* ** *
151970 -CA--T--T-CAA-CG---AACGTGAC----C-CACTAGGTATATATGATGAGCTAGGAACCAAC
559 GCATCTGATGAAACCGTTCAAC-AAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAAC
* * * * *
152020 ACTATAACAAAAGGAAATGAAGGCTACAGGACTATGTTGAAGCCGATAAGGTTGTACAAGAGAAC
623 ACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
*
152085 AAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAGAA-GATCCC
688 AAGAATTAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACA-AATGATCCC
* * * *
152149 TAAGGTGCCTCTTTATAGTATTTCTAAGCAACATATGAAAGGA
752 AAAGGTGCCTATTTATAGTATTTCTAAGTAACATATGAAAAGA
* * *
152192 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGTAA-TTGTATGCTTTGTCTTCCTT
1 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATG-AACTTGAATGCTTTGTATTTCTT
* *
152256 ATCTTCAAGGTTGGCT-AATTATTCTAGATCATTTTGGTAATGAATCTAGACAATTTAAAGCTTA
65 ATCTTCAAGGTTGGCTGAA-TATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTA
* * * * * *
152320 ATTTGGCCTTAGTTTCGTCCAAGTGGTGG-A-ACACTAGCTATTCCAAGC-GAAAATTGTCTAAA
129 ATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAA
* * **** * *
152382 TAAGTGAATTAAATCACCCTTCATTGCAAGCTCCCTTGAAGAATATGAAAAGATTATAACAATCA
194 TAAGTGAATTAAATCACCCTTCATTGCATGCTCCATACTTGACT-T---TAGATTATAACAATCA
* * * * * *
152447 ACTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCTATGGCTTCTAACTTGGCTGAAGTTGA
255 GCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGA
* * *
152512 AAAGACACTCCCTTGGTTCAAACTCATCC--AT--GCC-T----AAAATTCCCGTAACAAAATTC
320 GAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCCGTAACAAAATTC
*
152568 CAT-CCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTACCGATATCGGATTGAGGTGATT
385 C-TGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATT
* * * * **
152632 CAAAAGGAATTGAAAAGATAAGAGACAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATG
449 CAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTGAGTTCCAGAACCAAACATG
* * *
152697 TCTGTATAGAATCAAGAACT-TGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTC
514 TCTATATCGAATCCAGAA-TATGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTC
* *
152761 AACAAACGTGACCCACTAGCTATATATGATGAGCTTGGAACCAACTCTATAACAAAAGGAAATGA
578 AACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGA
* * *
152826 AGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTATAGAAACCACTC
643 AGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTC
*
152891 AAAGATGTTTTATATATTCAAAATATGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTAT
708 AAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTAT
152956 TTCTAAGTAACATATGAAAAGA
773 TTCTAAGTAACATATGAAAAGA
*
152978 CTCAAAAGATGAAAAATTATCATCAATTTACCAATAAAATGAACTTGAATGCTTTGTATTTCTTA
1 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTATTTCTTA
* * * *
153043 TATTCAAGGTTGGCTGAATATTATAGATCATTTTGGGAATAAATCTAGACAATTTTAAGCTTAAT
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAAT
* * * *
153108 TTGGCTTTAATTCCGTCCATGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTATCTTAATA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
153173 AGTGAATTAAATCACCCTTCATTGCATGCTCC---CTTGACTTTAGATTATAACAATCAGCTTTG
196 AGTGAATTAAATCACCCTTCATTGCATGCTCCATACTTGACTTTAGATTATAACAATCAGCTTTG
* *
153235 AATTCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTGGGATGAAATTGAGAAGAC
261 AATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGAC
* * *
153300 TCTCCCTTGGTTCAAACTCATCCCAATCATCCAGGCACAAAATTCCCGTAACAAAATTCCTTCCT
326 TCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCCGTAACAAAATTCCTGCCT
* * * *
153365 GCACTGTCTTCAGTAAATCGATCATATCTCAAGCTCCAGATATCGGATTGGGGTGATTCAAAAGG
391 GCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGG
* *
153430 CTTTGGAAAGATAATAGATAGATGAATAATTCCCAATTGAGTTCCAGAACCAAACATGTCTATAT
456 CATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTGAGTTCCAGAACCAAACATGTCTATAT
153495 CGAATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACAAACG
521 CGAATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACAAACG
* *
153560 TGACCCACTAGCTATATATGATGAGCTTGGAACCAACTCTATAACAAAAGGAAATGAAGACTACA
586 TGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACA
* *
153625 AGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTATAGAAACCTCTCAAAGATGT
651 AGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAAGATGT
*
153690 TTTATATATTCAAAATATGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGT
716 TTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGT
153755 AACATATGAAAAGA
781 AACATATGAAAAGA
*
153769 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAATTTGAATGCTTTGTATTTCTTA
1 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTATTTCTTA
* * * *
153834 TATTCAAGGTTGGCTGAATATTATAGATCATTTTGGGAATAAATCTAGACAATTTTAAGCTTAAT
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAAT
* * * *
153899 TTGGCTTTAATTCCGTCCATGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTATCTTAATA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
* *
153964 AGTGAATTAAATCACCCTTCATTACATGCT-C-T-CTTGACTTTAGATTATAACAATCAGCATTG
196 AGTGAATTAAATCACCCTTCATTGCATGCTCCATACTTGACTTTAGATTATAACAATCAGCTTTG
*
154026 AATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTGGGATGAAATTGAGAAGAC
261 AATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGAC
154091 TCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCCGTAACAAAATTCCTGCCT
326 TCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCCGTAACAAAATTCCTGCCT
* * * *
154156 GCACTGTCTTCAGTAAATCGATCATATCTCAAGCTCCAGATATCGGATTGGGGTGATTCAAAAGG
391 GCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGG
* *
154221 CTTTGGAAAGATAATAGATAGATGAATAATTCCCAATTGAGTTCCAGAACCAAACATGTCTATAT
456 CATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTGAGTTCCAGAACCAAACATGTCTATAT
154286 CGAATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACAAACG
521 CGAATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACAAACG
* *
154351 TGACCCACTAGCTATATATGATGAGCTTGGAACCAACTCTATAACAAAAGGAAATGAAGACTACA
586 TGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACA
* *
154416 AGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTATAGAAACCTCTCAAAGATGT
651 AGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAAGATGT
*
154481 TTTATATATTCAAAATATGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGT
716 TTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGT
154546 AACATATGAAAAGA
781 AACATATGAAAAGA
*
154560 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAATTTGAATGCTTTGTATTTCTTA
1 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTATTTCTTA
* * * *
154625 TATTCAAGGTTGGCTGAATATTATAGATCATTTTGGGAATAAATCTAGACAATTTTAAGCTTAAT
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAAT
* * * *
154690 TTGGCTTTAATTCCGTCCATGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTATCTTAATA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
* *
154755 AGTGAATTAAATCACCCTTCATTACATGCT-C-T-CTTGACTTTAGATTATAACAATCAGCATTG
196 AGTGAATTAAATCACCCTTCATTGCATGCTCCATACTTGACTTTAGATTATAACAATCAGCTTTG
*
154817 AATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTGGGATGAAATTGAGAAGAC
261 AATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGAC
154882 TCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCCGTAACAAAATTCCTGCCT
326 TCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCCGTAACAAAATTCCTGCCT
* * * *
154947 GCACTGTCTTCAGTAAATCGATCATATCTCAAGCTCCCGATATCGGATTGGGGTTATTCAAAAGG
391 GCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGG
* *
155012 CTTTGGAAAGATAAGAGATAGATGAATAATTCCCAATTGAGTTCCAGAACCAAAAATGTCTATAT
456 CATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTGAGTTCCAGAACCAAACATGTCTATAT
155077 CGAATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAA-AGAAC
521 CGAATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACA-AAC
* * ** * * *
155141 GTGACCCACTAGCTATATTTGACGATATAGGAAACAACACTATAACAAAAGGAAATGACGAGTAC
585 GTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTAC
* * *
155206 AAGACTATCTTGAAGCCGATAAAGTTCTATAGGAGAACAAGAATAAAAGCAACCTCTCAAAGATG
650 AAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAAGATG
* * * *
155271 TTTTTTATATATTCCAAATGTGTATCTACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCTA
715 --TTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTA
* * * *
155336 AGCAGCGTATGAAAATA
778 AGTAACATATGAAAAGA
* * * * * * * *
155353 CTC--AATATGAACAATTCTAATTAATTTAGTAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
1 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTATTTCTTA
* *
155416 TCTTCAAGGTTGGTTGAATATTGTAGATCATTTTAGGG-ATGAATCTAGACAATTTGAAGCTTAA
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTT-GGGAATGAATCTAGACAATTTGAAGCTTAA
* * * * *
155480 TTAGGCCTTAATTTCGACCAAGTGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTTTCTTAAA
130 TTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAAT
* *
155545 AACTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGA
195 AAGTGAATTAAATCACCCTTCATTGCATGCT-CC---------AT-----A--CTTGACTTTAGA
* * * * * *
155610 TGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGAGTCCTTCATTGGGTTCTCACTT
243 TTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTT
* * * *
155675 GGATGAAGTTGAAAAGACACTCCCTTGGTTC-AA---A--C---TCATCCATGCATAAAATTCCC
308 GGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCC
* *
155731 ATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGA
373 GTAACAAAATTCCTGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGA
* * * * * *
155796 TTGAGGTGATTCTAAAGGCATTGGAAAGATAAGAGATAGATAAATAATTACCAATTGATTTCTAA
438 TTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTGAGTTCCAG
* * * * * *
155861 AACCAAACATATCTGTATC-ACATCTAGAATCTGAAGACATTCTGACTGATATTCTTGTATATGA
503 AACCAAACATGTCTATATCGA-ATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGA
* * *
155925 TGAAACCGTTCAACGAACGTGACCCGCTAGCTATATATGATGAGCTAGTAACCAACACTATAACA
567 TGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACA
155990 AAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAA
632 AAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAA
* * *
156055 AGCAACCTCTC-AAGTATGTTTTATATATTCAAAATGTGTATCTACAAATGATCCAAAAGATGCC
697 AGCAACCTCTCAAAG-ATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCC
156119 TATTTATAGTATTTCTA
761 TATTTATAGTATTTCTA
156136 TGCTTTTTCT
Statistics
Matches: 4880, Mismatches: 481, Indels: 305
0.86 0.08 0.05
Matches are distributed among these distances:
741 3 0.00
742 4 0.00
743 7 0.00
744 7 0.00
745 32 0.01
746 4 0.00
747 3 0.00
748 22 0.00
749 4 0.00
750 2 0.00
751 7 0.00
752 3 0.00
753 4 0.00
754 85 0.02
755 11 0.00
756 2 0.00
757 2 0.00
758 3 0.00
759 3 0.00
764 1 0.00
765 3 0.00
766 2 0.00
767 6 0.00
768 45 0.01
769 14 0.00
770 83 0.02
771 235 0.05
772 3 0.00
773 2 0.00
774 5 0.00
775 1 0.00
777 1 0.00
778 4 0.00
779 3 0.00
781 3 0.00
782 102 0.02
783 2 0.00
784 2 0.00
785 6 0.00
786 326 0.07
787 4 0.00
788 18 0.00
789 49 0.01
790 5 0.00
791 2075 0.43
792 5 0.00
793 75 0.02
797 3 0.00
798 384 0.08
799 121 0.02
800 232 0.05
801 230 0.05
802 408 0.08
803 8 0.00
804 4 0.00
805 4 0.00
806 5 0.00
807 5 0.00
808 32 0.01
809 3 0.00
810 6 0.00
811 127 0.03
812 7 0.00
813 7 0.00
814 3 0.00
815 3 0.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (794 bp):
CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAACTTGAATGCTTTGTATTTCTTA
TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAAGCTTAAT
TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
AGTGAATTAAATCACCCTTCATTGCATGCTCCATACTTGACTTTAGATTATAACAATCAGCTTTG
AATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGAC
TCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCACAAAATTCCCGTAACAAAATTCCTGCCT
GCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGG
CATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTGAGTTCCAGAACCAAACATGTCTATAT
CGAATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACAAACG
TGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACA
AGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAAGATGT
TTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGT
AACATATGAAAAGA
Found at i:156821 original size:745 final size:736
Alignment explanation
Indices: 155399--156880 Score: 2184
Period size: 745 Copynumber: 2.0 Consensus size: 736
155389 ATGCACTTGA
* **
155399 ATGCTTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTGTAGATCATTTTAGGGATGAATCTAG
1 ATGCTTTGTCTTTCTTATCTTCAACGTTGGTTGAATATACTAGATCATTTTAGGGATGAATCTAG
* *
155464 ACAATTTGAAGCTTAATTAGGCCTTAATTTCGACCAAGTGGTGGAAGACTCTTGCTATTCCATGC
66 ACAATTTGAAGCTTAATTAGGCCTTAATTTCGACCAAGGGGTGAAAGACTCTTGCTATTCCATGC
* *
155529 TGAAAATTTTCTTAAAAACTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAATATGAAC
131 TGAAAATTGTCTTAAAAACTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAAC
* **
155594 AACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGAGTCCTT
196 AACACTTGACTTTAGATGATAACAATCAGATTTGAATGCCTTGAATGTGTGAAATAAGAGTCCTT
* * * *
155659 CATTGGGTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAA
261 CAATGGCTTCTCACTTGGATGAAATTGAAAAGACACTCCCTTGGTTCAAAATCATCCATGCATAA
*
155724 AATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGA
326 AAGTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGA
* * * * *
155789 TATCGGATTGAGGTGATTCTAAAGGCATTGGAAAGATAAGAGATAGATAAATAATTACCAATTGA
391 TAACGGATTGAGGTGATTCAAAAGGAATTGGAAAGATAAGAGATAGAGAAACAATTACCAATTGA
* *
155854 TTTCTAAAACCAAACATATCTGTATCACATCTAGAATCTGAAGACATTCTGACTGATATTCTTGT
456 TTTCTAAAACCAAACATATCTGTATCACATCCAGAATCTGAAGACATTCTGACTAATATTCTTGT
* * * * *
155919 ATATGATGAAACCGTTCAACGAACGTGACCCGCTAGCTATATATGATGAGCTAGTAACCAACACT
521 ATATAATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATCAGCAAGAAACCAACACT
*
155984 ATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAG
586 ATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGACGATAAAGTTCTACAAGAGAACAAG
* * * *
156049 AATTAAAGCAACCTCTCAAGTATGTTTTATATATTCAAAATGTGTATCTACAAATGAT-CCAAAA
651 AATGAAAACAAACTCTCAAGTATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAA
156113 GATGCCTA-TTTATAGTATTTCT
716 G-TGCC-ACTTTATAGTATTTCT
* * *
156135 ATGCTTTTTCTTTCTTATCTTCAACGTTTGTTGAATATACTAGATCATTTTGGGGATGAATCTAG
1 ATGCTTTGTCTTTCTTATCTTCAACGTTGGTTGAATATACTAGATCATTTTAGGGATGAATCTAG
* *
156200 ACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGAAAGACTCTTGCTATTCCATGC
66 ACAATTTGAAGCTTAATTAGGCCTTAATTTCGACCAAGGGGTGAAAGACTCTTGCTATTCCATGC
* *
156265 TGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAAC
131 TGAAAATTGTCTTAAAAACTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAAC
* * *
156330 AACACTTGACTTTAGATTATAACAATCAGATTTGAATTCCTTGAATGTGTGAATTAAGAGTCCTT
196 AACACTTGACTTTAGATGATAACAATCAGATTTGAATGCCTTGAATGTGTGAAATAAGAGTCCTT
* * *
156395 CAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTTAATCACATCCAAATCATC
261 CAATGGCTTCTCACTTGGATGAAATTGAAAAGACACTCCCTTGG--T--T--CA---AAATCATC
* * * *
156460 CATTCGTAAAAGTCCCGTAACAAAATTCCTGCCTGCACTATCTTCAATAAATCGATCATATCTCA
317 CATGCATAAAAGTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCA
*
156525 AGCTCCCGATAACGGATTG-GGATGATTCAAAAGGAATTGGAAAGATGAGAGATAGAGAAACAAT
382 AGCTCCCGATAACGGATTGAGG-TGATTCAAAAGGAATTGGAAAGATAAGAGATAGAGAAACAAT
** * * * *
156589 T-CTCAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTTTGAAGACATTCTGACT
446 TAC-CAATTGATTTCTAAAACCAAACATATCTGTATCACATCCAGAATCTGAAGACATTCTGACT
* * * * *
156653 AATATTCTT-TAATCTAATGAAATCGTTCAACGAATGTTACCCACTAGGTATATATGATCAGCAA
510 AATATTCTTGT-ATATAATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATCAGCAA
* ** * *
156717 GAAACTAATTCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGATGATAAAGTTTTA
574 GAAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGACGATAAAGTTCTA
*
156782 CAAGAGAACAAGAATGAAAACAAACTCTCAAAG-ATGTTTTATTTATTCAAAATGTGTATATACA
639 CAAGAGAACAAGAATGAAAACAAACTCTC-AAGTATGTTTTATATATTCAAAATGTGTATATACA
156846 AATGATCCCAAAAGTGCCACTTTATAGTATTTCT
703 AATGATCCCAAAAGTGCCACTTTATAGTATTTCT
156880 A
1 A
156881 AGAAGCATAT
Statistics
Matches: 664, Mismatches: 67, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
736 278 0.42
738 1 0.00
740 1 0.00
742 2 0.00
744 5 0.01
745 367 0.55
746 10 0.02
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (736 bp):
ATGCTTTGTCTTTCTTATCTTCAACGTTGGTTGAATATACTAGATCATTTTAGGGATGAATCTAG
ACAATTTGAAGCTTAATTAGGCCTTAATTTCGACCAAGGGGTGAAAGACTCTTGCTATTCCATGC
TGAAAATTGTCTTAAAAACTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAAC
AACACTTGACTTTAGATGATAACAATCAGATTTGAATGCCTTGAATGTGTGAAATAAGAGTCCTT
CAATGGCTTCTCACTTGGATGAAATTGAAAAGACACTCCCTTGGTTCAAAATCATCCATGCATAA
AAGTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGA
TAACGGATTGAGGTGATTCAAAAGGAATTGGAAAGATAAGAGATAGAGAAACAATTACCAATTGA
TTTCTAAAACCAAACATATCTGTATCACATCCAGAATCTGAAGACATTCTGACTAATATTCTTGT
ATATAATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATCAGCAAGAAACCAACACT
ATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGACGATAAAGTTCTACAAGAGAACAAG
AATGAAAACAAACTCTCAAGTATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAA
GTGCCACTTTATAGTATTTCT
Found at i:162071 original size:744 final size:743
Alignment explanation
Indices: 160616--166955 Score: 3670
Period size: 811 Copynumber: 8.0 Consensus size: 743
160606 TTGCATTCTC
* * * * * *
160616 CCTTGAAGAATATGAACAACCCTTAACTTTAGATGATAACAATAATCTTTGAAGGCCTTGAATGT
1 CCTTGAAGAATATGAAAAACCCTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGT
* * * * *
160681 GTGATTTAAGAGTCATTCAATGGCTTGTTACTTGGC-AGAAGTTGAAA-A-ACTCTCCCTTGGTT
66 GTGAATTAAGAGTC---CAATTGCTT-TAACTTGGCTTGAAGTTGAAATAGACACTCCCTTGGTT
* * * * *
160743 CAAACTCATCCAAATCATCCATGTATAAAATT-CCATAACAAAATTCCAGCCTGCACTGTCTT-A
127 C-AA---A--C---TCATCCATGCATAAAATTCCCGTAACAAAATT-CATCATGCACTATCTTCA
** *
160806 TATAAATCGATCATATCTCAAGCTCCCGATATCAAATTGAGGTGATTCAAAAGGCATTGGAAAGA
182 -ATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGA
* * * *
160871 AAAGAGATAGATGAATAATTCCCAAATGATTTC-TGAAGCCAAATATGTATGTAT-GACATCTAG
246 TAAGAGATAGATGAATAATTACCAATTGATTTCTTGAA-CCAAACATGTATGTATAG-CATC-AG
** * *
160934 AATCT-GAAGACATTCTTTCTGATATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCG
308 AAT-TAGAAGACATTCTGACTGATATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCA
* *
160998 CTAGCTATATACGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTAC
371 CTAGCTATATACGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTAT
* * * * *
161063 CTCGAAGCCGATAAGGTTGTACAAAAGAACAAGAATGAAAGGAACCTCTCAAATATGTTTTATAT
436 CTTGAAGCCGATAAAGTTCTAC-AAAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATAT
* * *
161128 ATTCAAAATGTGTATATACAGATGATCCCAAAGGCGCCTCTTTATAGCATTTCTAAGCAACATAT
500 ATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACATAT
* * * *
161193 GAAAGGACTCAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAATGCAATTGTATGCTTTGTC
565 GAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTC
** * ** *
161258 TTTCTTATCTTCAAGGTTGGT-TGAATATTCTAGATCATTTCAGGAACGAATTTAGACAATTTAA
630 TTTCTTATCTTCAAGGTT-GTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGA
* *
161322 AGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGTAGACTCTAGCTATT
694 AGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATT
*
161372 CCTTGAAGAATATGAACAACCCTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGT
1 CCTTGAAGAATATGAAAAACCCTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGT
*
161437 GTGAATTAAGAGTCCTATTGCTTATAACTTGGC-TGAAGTTGAAA-AGACACTCCCTTGGTTCAA
66 GTGAATTAAGAGTCCAATTGCTT-TAACTTGGCTTGAAGTTGAAATAGACACTCCCTTGGTTCAA
*
161500 ACTCATCCATGCATAAAATTCCCGTAACAAAATTCCATCATGCACAATCTTCAATAAATCGATCA
130 ACTCATCCATGCATAAAATTCCCGTAACAAAATT-CATCATGCACTATCTTCAATAAATCGATCA
* * *
161565 TATCTCAAGATCCCGATATCGGATTGATGTTATTCAAAAGGCATTGAAAAGATAAGAGATAGATG
194 TATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATAGATG
*
161630 AATAATTACCAATTGATTTCTTGAACCAAACATGTATGTATAGCATCAGGAATTAGAAGATATTC
259 AATAATTACCAATTGATTTCTTGAACCAAACATGTATGTATAGCATCA-GAATTAGAAGACATTC
* ** *
161695 TGACTGA-ATTTGTTGCATCTGATGAAATTGTTCAACGAACGTGACCCACTAGCTATATATGATG
323 TGACTGATA-TTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATACGATG
** * **
161759 AGCTAGGAACCAACGCTATAACAAAATTAAATGAAGACTAGAAGACTATCTTGAAGAGGATAAAG
387 AGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAG
* * *
161824 TTCTACAAAGAACAAGAATTAAAGCAACCTCTCAAAGATGATTTATATATTCAAAATATGTATAT
452 TTCTACAAAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATAT
* *
161889 ACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGTAACATATGAAAAGTCTCAAAAGAT
517 ACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACATATGAAAAGACTCAAAAGAT
* * * * * *
161954 GGAAAATTGTCATCATTTTAGCGATAAAATGCACTTGAATGCTTTGTGTTTCATATCTTCAAGGT
582 GAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGT
*
162019 TGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGATAATTTGAAGCTTAATTTGGCCTTAA
647 TGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATTTGGCCTTAA
* * *
162084 TTCCGTCCATGGAGTGGAAGACTCTTGCTATTT
712 TTTCGTCCAAGGGGTGGAAGACTCTTGCTA-TT
* *
162117 CATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATA
1 CCT--TG--AA--G----AAT-A-TGAA--AAA-C-CC-----TTG-A--CT---TT--AGATTA
* * * ** * ** *
162182 TGAACAACCCTTGACTTT-AGATG-ATAACAAATCAGCTTTGAATTCCTTGAATGTCTGAATTAA
37 T-AACAA-TC-AG-CTTTGA-ATGCCT--TGAAT--G-TGTGAATT--AAG-A-GTC-CAATT--
* *
162245 GAGTCCTTCAA--TGGCTTGTCAATTGGATGAAATTTAGACGACTCTCCTTTGGTTCAAACTGAT
85 --G--CTTTAACTTGGCTTG--AA---GTTGAAA--TAGAC-ACTC-CC-TTGGTTC-AA---A-
* * *
162308 CCAAATCATCCATGCATAAAATTCCCGAAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGA
131 -C---TCATCCATGCATAAAATTCCCGTAACAAAATTCAT-CATGCACTATCTTCAATAAATCGA
* * * * *
162373 TCCTATCTCAAGCTCCCGATGTTGGATT-AGGGTGATTCAAATGGCATTCG-AAAGATAAGAAAC
191 TCATATCTCAAGCTCCCGATATCGGATTGA-GGTGATTCAAAAGGCATT-GAAAAGATAAGAGA-
** * * * * * * * *
162436 TTAGA--AATAATTATTAATTTATTTCTGGAACAAAACATGTCTGTATCGTATCCAGAGTTTGAA
253 -TAGATGAATAATTACCAATTGATTTCTTGAACCAAACATGTATGTATAGCAT-CAGAATTAGAA
* * * * *
162499 GAAATTCAT-ACTAATATTCTTGCATCTGATGAAACCATTCAATGAACGTGACCCACTAGGTATA
316 GACATTC-TGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATA
* * * * * *
162563 TATGATGAGCTAGGAACCAATGCTATAATAAAAGGAGATGAAGACTACAAGACTAACTTTAAGCC
380 TACGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCC
* * * * *
162628 GATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAACATGTTTTATAAATTCAATAT
445 GATAAAGTTCTACAA-AGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAAT
* * *
162693 GTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGGAGCATATGAAAACG-C
509 GTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACATATGAAAA-GAC
* * *
162757 TCAACAGACGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTAT
573 TCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTAT
* * * * * *
162822 CTTCAAGGTTGGCTAAATATTCTAGATCATTTTGGGGATGAATCTAGATAATTTAAAGCTTAATT
638 CTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATT
*
162887 TGGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATT
703 TGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATT
* *
162928 CCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCACGCTCCCTTGAAGAAT
1 CC-T--TG--AA--G----AAT-A-TG-A--AAA--A-CC--C-TTG-A--CT---TT--AGATT
* * * * * * ** ** ** *
162993 GTGAACAACCCTTGAATTTAGATGATAACAATCATCTTTGAAGGCCATGAATGTGTGA-TTTAAG
36 AT-AACAA-TC-AG-CTTT-GA--AT-----GC--C-TTGAATG-TGTGAAT-TAAGAGTCCAAT
* * * * * * * *
163057 AGTCATTCAA--TGGCTTTTTACTTGGCTGAAGTTAAAAAACTCTCCCTTGGTTCAAACTCATCG
84 TG-C-TTTAACTTGGC--TTGA---AGTTGAA-AT-AG--ACACTCCCTTGGTTC-AA---A-C-
* * * * *
163120 AAATCATCCATGCATAAAATTCCCATAACAAAATTCCAGCTTGCACTGTCTTAAATAAATCGATC
132 ---TCATCCATGCATAAAATTCCCGTAACAAAATT-CATCATGCACTATCTTCAATAAATCGATC
* * * * *
163185 ATATCTCAAGCTCCCAATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGAAAAGAGATATAT
193 ATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATAGAT
*
163250 GAATAATTCCCAATTGATTTC-TGAAACCAAACATGTATGTATCA-CATCAAGAATCTA-AAGAC
258 GAATAATTACCAATTGATTTCTTG-AACCAAACATGTATGTAT-AGCATC-AGAAT-TAGAAGAC
* * *
163312 ATTCTGACCGATATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGCTAGCTATATAC
319 ATTCTGACTGATATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCACTAGCTATATAC
* *
163377 GATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTA-CATCGAAGCCGA
383 GATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATC-TTGAAGCCGA
* * * *
163441 AAAAGTTCTAGAAGAGAACAAGAATGGAAGCAACCTCACAAAGATGTTTTATATATTCAAAATGT
447 TAAAGTTCTACAA-AGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGT
* * * * * * *
163506 GTATATACAGATGATCTCAAAGGTGACTCTTTATAGTATTTCTAAGCGACATTTGAGAGGACTCA
511 GTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACATATGAAAAGACTCA
* * * * *
163571 AAAGATGAAAAAGTATCATCAATTTAGCAATAAAATGAAATT-ATATGCTTTGTCTTTTTTATCT
576 AAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGA-ATGCTTTGTCTTTCTTATCT
* * * * * *
163635 TCAAGGTTGGCAGAATATTCTAGATCATTGTGGGAACGAATCCAGACAATTTGAAACTTAATTTG
640 TCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATTTG
*
163700 GCCTTAATTTCGTCCAAGGGGTGGAAGA--CTAGCTATT
705 GCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATT
* *
163737 CCAAGCGAAAATT-ATCATAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
1 -C---C-----TTGA--AGAAT-A-TG-A--AAA--A-CC--C-TTG-A--CT---TT--AGATT
** * * * ** * ** *
163801 ATGAACCCT-TGACTTTAGATTATAACAAACAAATTTTAATGCCT-TGAATGTGTGAATTAAGAG
36 AT-AACAATCAG-CTTT-GA--AT-GC---C----TTGAATG--TGTGAAT-TAAGAGTCCA-AT
* * * * * * **
163864 TCCTTCAA--TGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCA
84 TGCTTTAACTTGGCTTG--A---AGTTGAAA-T-AG-ACACTCCCTT--GGTTCAAACTCATCCA
* * * * * * *
163927 TGCCTAAAATTTCCGTTACAAAAATCACTCTTGCACTATCTTCAATAAATCGATCATATGTGAAG
139 TGCATAAAATTCCCGTAACAAAATTCA-TCATGCACTATCTTCAATAAATCGATCATATCTCAAG
* * * *
163992 CTCCCGATATCGGATTTAGATGATTCAAAAGGCATTGAAAAGTTAAGAGATAGATGAATAATTCC
203 CTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATAGATGAATAATTAC
* * * * *
164057 CAATTGATATCTTGAACCAATCATGTATGTATAGCATTAGGAATTTGAAGATATTCTGACTGATA
268 CAATTGATTTCTTGAACCAAACATGTATGTATAGCATCA-GAATTAGAAGACATTCTGACTGATA
* ***
164122 TTGTTGCATCTGATGAAATTATTCAACGAACGTGACCCACTAGCTATATACGATGAGCTAGGAAC
332 TTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATACGATGAGCTAGGAAC
* * ** *
164187 CAATGTTATAACAAAATTAAATGAAGACTACAAGACTATCTTGAAGACGATAAAGTTCTACAAAG
397 CAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAAG
* ** * *
164252 AACAAGAATTAAAGTGACCTCTCAAATATGTTTTATATATTCAAAATGTGTATAAACAAATGATC
462 AACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATC
* ** * * *
164317 CTAAAGGTGATTCTTTATATTATTTCTAAGCAACATATGAAAAGACTCAAAAGATGGAAAATTGT
527 CCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACATATGAAAAGACTCAAAAGATGAAAAATTCT
* *
164382 CATCATTTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCATATCTTCAAGGTTGTCTGAATA
592 CATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGTCTGAATA
*
164447 TTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAT
657 TTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAA
164512 GGGGTGGAAGACTCTTGCTATTT
722 GGGGTGGAAGACTCTTGCTA-TT
* *
164535 CATGCTGAAAATTGTCTTAATAAGTGAATTAAATCATCTTTTATTGCATGCTCCCTT-GAATAAT
1 CCT--TG--AA--G----AAT-A-TGAA--AAA-C--C----CTTG-A--CT---TTAG-AT--T
* * ** * * * *
164599 ATGAACAACTCTTGACTTT-AGATG-ATAACAAATCAGCTTTGAGTGCCTTGAATA-TCTGAATT
36 AT-AACAA-TC-AG-CTTTGA-ATGCCT--TGAAT--G-TGTGA----ATT-AAGAGTC-CAATT
* * * * * * * ** * * *
164661 AAGAGTCATTCA-GTGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTTGTTCTAACTGA
85 ----G-CTTTAACTTGGCTTG--A---AGTTGAAA-T-AG-ACACTCCCTT--GGTTCAAACTCA
* * *
164725 TCCAAATCGTCCATGCGTAAAATTTCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCG
135 TCC--AT-G--CAT----AAAATTCCCGTAACAAAATTCAT-CATGCACTATCTTCAATAAATCG
* * *
164790 ATCCTATCTCAAGCCCCCGATATCAGATT-AGGGTGATTCAAAAGGCATTCG-AAAGATAAGAGA
190 ATCATATCTCAAGCTCCCGATATCGGATTGA-GGTGATTCAAAAGGCATT-GAAAAGATAAGAGA
* * * * * *
164853 TATA-GAAATAATT-CTTAATTGATTTCTGGAACCAAACATGTCTGTATCGTATCTAGAATTTA-
253 TAGATG-AATAATTAC-CAATTGATTTCTTGAACCAAACATGTATGTATAGCATC-AGAA-TTAG
* * * *
164915 AATACATTCAT-ACTAATATTCTTGCATCTGATGAAACCGTTCAATGAACGTGACCCAATAGCTA
314 AAGACATTC-TGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTA
* * * *
164979 TATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTCAAG
378 TATACGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAG
* * * * *
165044 CAGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATAAATTCAAT
443 CCGATAAAGTTCTACAA-AGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAA
* * * * *
165109 ATGTGTATATACAAATGATCCGAAAGGTGCCTATTTATAGTATTTATAAGCAGCATATGAAAAGG
507 ATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACATATGAAAAGA
* *
165174 CTCAAAAGAAT-AAAAATTCCCATCAATTTAGCAATAATAA-GCTCTTGAATGCTTTGTCTTTCT
572 CTCAAAAG-ATGAAAAATTCTCATCAATTTAGCAATAA-AATGCACTTGAATGCTTTGTCTTTCT
* * *
165237 TATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAATCTTA
635 TATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTA
* *
165302 ATTTGGCTTTAATTTCGTCCAAGGGGTGGAAGACTCCTGCTATTT
700 ATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTA-TT
* * * * * ** * * ** *
165347 CATGCTGAA-AATTGTCTGAATAA---GTGAATTAAATCACCTTTTATTACATTCTCCCTTGAA-
1 CCT--TGAAGAA---TATGAAAAACCCTTGACTT---T-A--GATTATAACAATCAGCTTTGAAT
** ** * * * * * *
165407 GAATATGAACAACCCT-TGACTTTAGATGATAACAAATCAGCTTTGAA--TGCCTTGAACGTGCG
55 GCCT-TG---AA-TGTGTGAATTAAGA-G-T--CCAAT-TGCTTT-AACTTGGCTTGAA-GT-TG
* * * *
165469 AATTAAGAGTCCTTCCATGGCTTGTCACTTGGATGAAATTGAGAAAACTC-TCTCTTGGTTCAAA
107 AAAT-AGA-------CA---C---TCCCTT-G--G---TT---CAAACTCATC-CAT-G--C--A
* * * *
165533 CTAATCCAAATAATCCATGCATAA-AATTACTGTAACAAAATTCATGCA-TGTACTATC-TTCAA
143 -T-A---AAAT--TCC---CGTAACAA--AAT-T--C---A-TCATGCACTAT-CT-TCAAT--A
* * * * * * * * *
165595 AAAAGCGATCATA-CTCAAGCTCTCGATATCAGATCGGGGTAATTAAAAAGTCATTGGAAAGATA
185 --AATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGATA
** * * * * *
165659 AGAGACGGA-GAAATAATT-CTCAACTGATTTCTGGAACTAAACATGTATGTATCGCATCAAGAG
248 AGAGATAGATG-AATAATTAC-CAATTGATTTCTTGAACCAAACATGTATGTATAGCATC-AGAA
* * * * * *
165722 TTTGATGACATTATGACTAATATTCTTGAATCTGATGAAACCGTTCAACGAACGTTACCCACTAG
310 TTAGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAG
* * * * * **
165787 GTATATATGATGAGCTGGGAACCCATGCTATAACAAAAGGAAATGAAGACCGCAAGACTATCTTG
375 CTATATACGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTG
* *
165852 AAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTC
440 AAGCCGATAAAGTTCTACAA-AGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTC
* * * *
165917 AAAATGTGTATATACAAATGATCCCAAAGGTACATTTTTATAGTATTTCAAAG-AAGCATATGAA
504 AAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA-CATATGAA
* *
165981 AAGACTC--AAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGAATGATTTGTCTTT
568 AAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTT
* * * *
166044 CTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGTATCTAGACAATTTGAAGCT
633 CTTATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCT
* * *
166109 TAATTTGGCCTTAATTTCTTTCAAGTGGTGGAAGACTCTT--TATT
698 TAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATT
* *
166153 CCATGCTGAAAATTGTCTTAATAAGTAAATTAAATCACCCTTCATTGCATGCTACCTTGAAGAAT
1 CC-T--TG--AA--G----AAT-A-T-GA--AAA--A-CC--C-TTG-A--CT---TT--AGATT
* * * ** * * * **
166218 ATGAACAACCCTTGACTTTAGATGATAACAAT-CATCTTTGAA-T--GCA-TTGAATGTG-TGAA
36 AT-AACAA-TC-AG-CTTT-GA--AT-GCCTTGAATGTGTGAATTAAG-AGTCCAAT-TGCT---
* * * * * *
166277 TTAAGAGTCCTTCTACGTCTTTTAACTTCGCTGAAGTTGAAAAGACACTCCCGTT-GTTCAATCT
88 TT-A-A---C-T-T--GGC-TTGAA----GTTGAA-AT--AGA--CACTCCC-TTGGTTCAAACT
* * * * **
166341 CATCCATGCGTAAAATTCCCGTAACAAAATTCCTGCCTGCACTGTCTTCAACGAATCGATCATAG
133 CATCCATGCATAAAATTCCCGTAACAAAATTCAT-CATGCACTATCTTCAATAAATCGATCATA-
* * *
166406 T-T-AAGCTCCCGATATCGGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGACAGA-GAA
196 TCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATAGATG-A
* * * * *
166468 ATAATTATCAACTGATTT-TTGGAGCCAAACATGTATGTATCGCATCTAGAGTTTA-AAGACATT
260 ATAATTACCAATTGATTTCTT-GAACCAAACATGTATGTATAGCATC-AGA-ATTAGAAGACATT
* * * * * * *
166531 CTTACTAATATTCTTGAATCTGATGAAACTGTTCAACGAACATGACCCACTAGGTATATATGATG
322 CTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATACGATG
** * *
166596 AGCTAGGAACCATTGCTTTAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAG
387 AGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAG
* ** *
166661 TTTTACAAGAGAACAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATA
452 TTCTACAA-AGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATA
* * *
166726 TACAAATGATCTCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAATG-CTCAACAA
516 TACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACATATGAAAA-GACTCAA-AA
* * * *
166790 -ATGAAAAATTATCATCAATTTAGAAATAAAATGCCCTTGAATGCTTTGTCTTTCTTATCTTAAA
579 GATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAA
* * * * * *
166854 GGTTGGT-TGAATATTCTAGATCAATTTGGGGATGAATCTATATAATTTAAAGCTTAATTTGGCC
644 GGTT-GTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATTTGGCC
*
166918 TTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATT
708 TTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATT
166954 CC
1 CC
166956 ATGCGAAAAG
Statistics
Matches: 4538, Mismatches: 657, Indels: 733
0.77 0.11 0.12
Matches are distributed among these distances:
743 2 0.00
744 249 0.05
745 122 0.03
746 162 0.04
747 8 0.00
748 1 0.00
749 2 0.00
750 1 0.00
751 1 0.00
753 28 0.01
754 14 0.00
755 3 0.00
756 74 0.02
757 4 0.00
759 2 0.00
760 1 0.00
761 2 0.00
766 3 0.00
767 1 0.00
769 2 0.00
772 2 0.00
774 6 0.00
775 6 0.00
776 5 0.00
777 6 0.00
778 8 0.00
779 3 0.00
780 11 0.00
781 6 0.00
782 8 0.00
783 1 0.00
784 4 0.00
785 8 0.00
786 11 0.00
787 5 0.00
788 7 0.00
789 8 0.00
790 7 0.00
791 8 0.00
792 10 0.00
793 14 0.00
794 3 0.00
795 250 0.06
796 122 0.03
797 535 0.12
798 42 0.01
799 150 0.03
800 12 0.00
801 32 0.01
802 68 0.01
803 7 0.00
804 13 0.00
805 54 0.01
806 16 0.00
807 16 0.00
808 69 0.02
809 163 0.04
810 204 0.04
811 1222 0.27
812 592 0.13
813 22 0.00
814 3 0.00
815 10 0.00
816 6 0.00
817 3 0.00
818 3 0.00
819 2 0.00
820 9 0.00
821 1 0.00
822 3 0.00
823 7 0.00
824 3 0.00
825 1 0.00
826 6 0.00
827 2 0.00
828 5 0.00
829 5 0.00
830 6 0.00
831 3 0.00
832 7 0.00
833 10 0.00
834 2 0.00
835 1 0.00
836 2 0.00
837 1 0.00
838 5 0.00
839 4 0.00
841 3 0.00
842 4 0.00
843 3 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (743 bp):
CCTTGAAGAATATGAAAAACCCTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGT
GTGAATTAAGAGTCCAATTGCTTTAACTTGGCTTGAAGTTGAAATAGACACTCCCTTGGTTCAAA
CTCATCCATGCATAAAATTCCCGTAACAAAATTCATCATGCACTATCTTCAATAAATCGATCATA
TCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATAGATGAA
TAATTACCAATTGATTTCTTGAACCAAACATGTATGTATAGCATCAGAATTAGAAGACATTCTGA
CTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATACGATGAGCT
AGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCT
ACAAAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAA
ATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACATATGAAAAGACTCAAAAGATGAAA
AATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGTC
TGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTC
GTCCAAGGGGTGGAAGACTCTTGCTATT
Found at i:165492 original size:812 final size:806
Alignment explanation
Indices: 161372--167226 Score: 7466
Period size: 811 Copynumber: 7.3 Consensus size: 806
161362 TCTAGCTATT
*
161372 CCTTGAAGAATATGAACAACCCTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGT
1 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGAATGT
* * * * * *
161437 GTGAATTAAGAGTCC-T--ATTGCTTATAACTTGGCTGAAGTTGAAAAGACACTCCCTTGGTTC-
66 GTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCCTTGGTTCA
* *
161498 AA-A-C-TCATCCATGCATAAAATTCCCGTAACAAAATTCCAT-CATGCACAATCTTCAATAAAT
131 AACATCATCATCCATGCATAAAATTCCCGTAACAAAATT-CATGCCTGCACTATCTTCAATAAAT
* * * *
161559 CGATCATATCTCAAGATCCCGATATCGGATT-GATGTTATTCAAAAGGCATTGAAAAGATAAGAG
195 CGATCATATCTCAAGCTCCCGATATCGGATTAG-GGTGATTCAAAAGGCATTGGAAAGATAAGAG
* *
161623 ATAGATG-AATAATTAC-CAATTGATTTCTTGAACCAAACATGTATGTATAGCATC-AGGAA-TT
259 ATAGA-GAAATAATT-CTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCTA-GAATTT
* * **
161684 AGAAGATATTCTGACTGAAT-TTGTTGCATCTGATGAAATTGTTCAACGAACGTGACCCACTAGC
321 A-AAGACATTCTGACT-AATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGC
* ** *
161748 TATATATGATGAGCTAGGAACCAACGCTATAACAAAATTAAATGAAGACTAGAAGACTATCTTGA
384 TATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGA
** * * * *
161813 AGAGGATAAAGTTCTACAA-AGAACAAGAATTAAAGCAACCTCTCAAAGATGATTTATATATTCA
449 AGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCA
* * * *
161877 AAATATGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGTAACATATGAAAA
514 AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAA
* * * * * * *
161942 GTCTCAAAAGATGGAAAATTGTCATCATTTTAGCGATAAAATGCACTTGAATGCTTTGTGTTTCA
579 GGCTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCT
* * *
162007 TATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGATAATTTGAAGCTTA
644 TATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTTA
* * * *
162072 ATTTGGCCTTAATTCCGTCCATGGAGTGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAA
709 ATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAA
* *
162137 TAAGTGAATTAAATCACCTTTTATTGCATGCTC
774 TAAGTGAATTAAATCACCCTTCATTGCATGCTC
*
162170 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATTCCTTGAATG
1 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC-AATCAGCTTTGAATGCCTTGAATG
* * * * * *
162235 TCTGAATTAAGAGTCCTTCAATGGCTTGTCAATTGGATGAAATTTAGACGACTCTCCTTTGGTTC
65 TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCCTTGGTTC
* *
162300 AAACTGATCCAAATCATCCATGCATAAAATTCCCGAAACAAAATTCATGCCTGCACTGTCTTCAA
130 AAAC--AT-C--ATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGCACTATCTTCAA
* * * * *
162365 TAAATCGATCCTATCTCAAGCTCCCGATGTTGGATTAGGGTGATTCAAATGGCATTCGAAAGATA
190 TAAATCGATCATATCTCAAGCTCCCGATATCGGATTAGGGTGATTCAAAAGGCATTGGAAAGATA
* * * * * * * * * *
162430 AGAAACT-TAGAAATAATTATTAATTTATTTCTGGAACAAAACATGTCTGTATCGTATCCAGAGT
255 AGAGA-TAGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCTAGAAT
* * * *
162494 TTGAAGAAATTCAT-ACTAATATTCTTGCATCTGATGAAACCATTCAATGAACGTGACCCACTAG
319 TTAAAGACATTC-TGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAG
* * * * *
162558 GTATATATGATGAGCTAGGAACCAATGCTATAATAAAAGGAGATGAAGACTACAAGACTAACTTT
383 CTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTG
* *
162623 AAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAACATGTTTTATAAATTC
448 AAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTC
* *
162688 AATATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGGAGCATATGAAA
513 AAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAA
* * * * *
162753 ACGCTCAACAGACGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTC
578 AGGCTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTC
* * * *
162818 TTATCTTCAAGGTTGGCTAAATATTCTAGATCATTTTGGGGATGAATCTAGATAATTTAAAGCTT
643 TTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTT
*
162883 AATTTGGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTA
708 AATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTA
* *
162948 ATAAGCGAATTAAATCACCCTTCATTGCACGCTC
773 ATAAGTGAATTAAATCACCCTTCATTGCATGCTC
* * * * *
162982 CCTTGAAGAATGTGAACAACCCTTGAATTTAGATGATAACAATCATCTTTGAAGGCCATGAATGT
1 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGAATGT
* * * * * * *
163047 GTGATTTAAGAGTCATTCAATGGCTTTTTACTTGGCTGAAGTT-AAAAAACTCTCCCTTGGTTCA
66 GTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCCTTGGTTCA
* * * *
163111 AACTCATCGAAATCATCCATGCATAAAATTCCCATAACAAAATTCCA-GCTTGCACTGTCTTAAA
131 AA--CATC---ATCATCCATGCATAAAATTCCCGTAACAAAATT-CATGCCTGCACTATCTTCAA
* * *
163175 TAAATCGATCATATCTCAAGCTCCCAATATCAGATT-GAGGTGATTCAAAAGGCATTGGAAAGAA
190 TAAATCGATCATATCTCAAGCTCCCGATATCGGATTAG-GGTGATTCAAAAGGCATTGGAAAGAT
* * * * *
163239 AAGAGATATATG-AATAATTCCCAATTGATTTCTGAAACCAAACATGTATGTATCACATCAAGAA
254 AAGAGATAGA-GAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCTAGAA
* ** * *
163303 TCTAAAGACATTCTGACCGATATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGCTA
318 TTTAAAGACATTCTGACTAATATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCACTA
* **
163368 GCTATATACGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTA-CAT
382 GCTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATC-T
* * * * * * *
163432 CGAAGCCGAAAAAGTTCTAGAAGAGAACAAGAATGGAAGCAACCTCACAAAGATGTTTTATATAT
446 TGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATAT
* * * * *
163497 TCAAAATGTGTATATACAGATGATCTCAAAGGTGACTCTTTATAGTATTTCTAAGC-GACATTTG
511 TCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAG-CATATG
* * * *
163561 -AGAGGACTCAAAAGATGAAAAAGTATCATCAATTTAGCAATAAAATGAAATT-ATATGCTTTGT
575 AAAAGG-CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGA-ATGCTTTGT
* * * * * *
163624 CTTTTTTATCTTCAAGGTTGGCAGAATATTCTAGATCATTGTGGGAACGAATCCAGACAATTTGA
638 CTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGA
* * * *
163689 AACTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA--CTAGCTATTCCAAGC-GAAAATTA
703 AGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTG
* *
163751 TCATAATAAGTGAATTAAATTACCCTTCATTGCATGCTC
768 TCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTC
* * ** *
163790 CCTTGAAGAATATG---AACCCTTGACTTTAGATTATAACAAACAAATTTTAATGCCTTGAATGT
1 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGAATGT
*
163852 GTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTC-
66 GTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCCTTGGTTCA
* * * * *
163916 AA-A-C-TCATCCATGCCTAAAATTTCCGTTACAAAAATCACT-CTTGCACTATCTTCAATAAAT
131 AACATCATCATCCATGCATAAAATTCCCGTAACAAAATTCA-TGCCTGCACTATCTTCAATAAAT
* * * * *
163977 CGATCATATGTGAAGCTCCCGATATCGGATTTA-GATGATTCAAAAGGCATTGAAAAGTTAAGAG
195 CGATCATATCTCAAGCTCCCGATATCGGA-TTAGGGTGATTCAAAAGGCATTGGAAAGATAAGAG
* * * * * *
164041 ATAGATG-AATAATTCCCAATTGATATCTTGAACCAATCATGTATGTATAGCAT-TAGGAATTTG
259 ATAGA-GAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCTA-GAATTTA
* * * ***
164104 AAGATATTCTGACTGATATTGTTGCATCTGATGAAATTATTCAACGAACGTGACCCACTAGCTAT
322 AAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTAT
* * ** *
164169 ATACGATGAGCTAGGAACCAATGTTATAACAAAATTAAATGAAGACTACAAGACTATCTTGAAGA
387 ATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGC
* *** * *
164234 CGATAAAGTTCTACAA-AGAACAAGAATTAAAGTGACCTCTCAAATATGTTTTATATATTCAAAA
452 CGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAA
* * ** * * * *
164298 TGTGTATAAACAAATGATCCTAAAGGTGATTCTTTATATTATTTCTAAGCAACATATGAAAAGAC
517 TGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGGC
* * * *
164363 TCAAAAGATGGAAAATTGTCATCATTTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCATAT
582 TCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTAT
* *
164428 CTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATT
647 CTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTTAATT
* *
164493 TGGCCTTAATTTCGTCCATGGGGTGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAA
712 TGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAA
* * *
164558 GTGAATTAAATCATCTTTTATTGCATGCTC
777 GTGAATTAAATCACCCTTCATTGCATGCTC
* * * *
164588 CCTTGAATAATATGAACAACTCTTGACTTTAGATGATAACAAATCAGCTTTGAGTGCCTTGAATA
1 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC-AATCAGCTTTGAATGCCTTGAATG
* * * * *
164653 TCTGAATTAAGAGTCATTCAGTGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTTGTTC
65 TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCCTTGGTTC
* * * * *
164718 TAACTGATCCAAATCGTCCATGCGTAAAATTTCCGTAACAAAATTCATGCCTGCACTGTCTTCAA
130 AAAC--AT-C--ATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGCACTATCTTCAA
* * * *
164783 TAAATCGATCCTATCTCAAGCCCCCGATATCAGATTAGGGTGATTCAAAAGGCATTCGAAAGATA
190 TAAATCGATCATATCTCAAGCTCCCGATATCGGATTAGGGTGATTCAAAAGGCATTGGAAAGATA
* * * *
164848 AGAGATATAGAAATAATTCTTAATTGATTTCTGGAACCAAACATGTCTGTATCGTATCTAGAATT
255 AGAGATAGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCTAGAATT
* * *
164913 TAAATACATTCAT-ACTAATATTCTTGCATCTGATGAAACCGTTCAATGAACGTGACCCAATAGC
320 TAAAGACATTC-TGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGC
* *
164977 TATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTCA
384 TATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGA
* *
165042 AGCAGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATAAATTCA
449 AGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCA
* * *
165107 ATATGTGTATATACAAATGATCCGAAAGGTGCCTATTTATAGTATTTATAAGCAGCATATGAAAA
514 AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAA
** *
165172 GGCTCAAAAGAAT-AAAAATTCCCATCAATTTAGCAATAATAA-GCTCTTGAATGCTTTGTCTTT
579 GGCTCAAAAG-ATGAAAAATTATCATCAATTTAGCAATAA-AATGCACTTGAATGCTTTGTCTTT
*
165235 CTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAATCT
642 CTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCT
* * * *
165300 TAATTTGGCTTTAATTTCGTCCAAGGGGTGGAAGACTCCTGCTATTTCATGCTGAAAATTGTCTG
707 TAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTT
* * * *
165365 AATAAGTGAATTAAATCACCTTTTATTACATTCTC
772 AATAAGTGAATTAAATCACCCTTCATTGCATGCTC
*
165400 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAACG
1 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC-AATCAGCTTTGAATGCCTTGAATG
* * *
165465 TGCGAATTAAGAGTCCTTCCATGGCTTGTCACTTGGATGAAATTGAGAAA-ACTCTCTCTTGGTT
65 TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGA-AAAGACTCTCCCTTGGTT
* * * * *
165529 CAAACTAATCCAAATAATCCATGCATAAAATTACTGTAACAAAATTCATGCATGTACTATCTTCA
129 CAAAC--AT-C--ATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGCACTATCTTCA
* * * * ** * * *
165594 AAAAAGCGATCATA-CTCAAGCTCTCGATATCAGATCGGGGTAATTAAAAAGTCATTGGAAAGAT
189 ATAAATCGATCATATCTCAAGCTCCCGATATCGGATTAGGGTGATTCAAAAGGCATTGGAAAGAT
** * * * *
165658 AAGAGACGGAGAAATAATTCTCAACTGATTTCTGGAACTAAACATGTATGTATCGCATCAAGAGT
254 AAGAGATAGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCTAGAAT
* * * * * *
165723 TTGATGACATTATGACTAATATTCTTGAATCTGATGAAACCGTTCAACGAACGTTACCCACTAGG
319 TTAAAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGC
* * **
165788 TATATATGATGAGCTGGGAACCCATGCTATAACAAAAGGAAATGAAGACCGCAAGACTATCTTGA
384 TATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGA
165853 AGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCA
449 AGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCA
* * * * *
165918 AAATGTGTATATACAAATGATCCCAAAGGTACATTTTTATAGTATTTCAAAGAAGCATATGAAAA
514 AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAA
* *
165983 GACTC--AAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGAATGATTTGTCTTTCT
579 GGCTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCT
* *
166046 TATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGTATCTAGACAATTTGAAGCTTA
644 TATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTTA
* * *
166111 ATTTGGCCTTAATTTCTTTCAAGTGGTGGAAGACTCTT--TATTCCATGCTGAAAATTGTCTTAA
709 ATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAA
* *
166174 TAAGTAAATTAAATCACCCTTCATTGCATGCTA
774 TAAGTGAATTAAATCACCCTTCATTGCATGCTC
* *
166207 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAATGT
1 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGAATGT
* * * * * * * * *
166272 GTGAATTAAGAGTCCTTCTACGTCTTTTAACTTCGCTGAAGTTGAAAAGACACTCCCGTT-GTTC
66 GTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCC-TTGGTTC
* * * **
166336 --A-ATC-TCATCCATGCGTAAAATTCCCGTAACAAAATTCCTGCCTGCACTGTCTTCAACGAAT
130 AAACATCATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGCACTATCTTCAATAAAT
*
166397 CGATCATAGT-T-AAGCTCCCGATATCGGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAG
195 CGATCATA-TCTCAAGCTCCCGATATCGGATTAGGGTGATTCAAAAGGCATTGGAAAGATAAGAG
* * * * * *
166460 ACAGAGAAATAATTATCAACTGATTTTTGGAGCCAAACATGTATGTATCGCATCTAGAGTTTAAA
259 ATAGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCTAGAATTTAAA
* * * * *
166525 GACATTCTTACTAATATTCTTGAATCTGATGAAACTGTTCAACGAACATGACCCACTAGGTATAT
324 GACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATAT
* * *
166590 ATGATGAGCTAGGAACCATTGCTTTAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCG
389 ATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCG
* *
166655 ATAAAGTTTTACAAGAGAACAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAATG
454 ATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATG
* *
166720 TGTATATACAAATGATCTCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAATGCTC
519 TGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGGCTC
* *
166785 AACAA-ATGAAAAATTATCATCAATTTAGAAATAAAATGCCCTTGAATGCTTTGTCTTTCTTATC
584 AA-AAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATC
* * * * * * *
166849 TTAAAGGTTGGTTGAATATTCTAGATCAATTTGGGGATGAATCTATATAATTTAAAGCTTAATTT
648 TTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTTAATTT
* *
166914 GGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATTCCATGC-GAAAAGTGTCTTAATAAG
713 GGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAG
* *
166978 AGAATTAAATCACCCTTCATTGCATACTC
778 TGAATTAAATCACCCTTCATTGCATGCTC
* *
167007 CCTTAAAGAATATGAACAACCCTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGT
1 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGAATGT
* * * * * * *
167072 GTGAA-TAAGGAGTCCTT-TATGGATTCTAACTTGGCTGAAGTTGAAAAGACACTCCCTTGGTTC
66 GTGAATTAA-GAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCCTTGGTTC
*
167135 AAAC-TCAT--T-CATGCATAAAATTCCCGTAACAAAACTCCAT-CCTGCACTATCTTCAATAAA
130 AAACATCATCATCCATGCATAAAATTCCCGTAACAAAA-TTCATGCCTGCACTATCTTCAATAAA
**
167195 TCGATCATATCTCAAGCTATCGATATCGGATT
194 TCGATCATATCTCAAGCTCCCGATATCGGATT
167227 GAGGAGATTC
Statistics
Matches: 4398, Mismatches: 567, Indels: 182
0.85 0.11 0.04
Matches are distributed among these distances:
795 235 0.05
796 106 0.02
797 585 0.13
798 99 0.02
799 274 0.06
800 141 0.03
801 37 0.01
802 115 0.03
803 4 0.00
804 1 0.00
805 82 0.02
806 88 0.02
807 92 0.02
808 61 0.01
809 160 0.04
810 218 0.05
811 1266 0.29
812 828 0.19
813 6 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (806 bp):
CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGAATGT
GTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCCTTGGTTCA
AACATCATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGCACTATCTTCAATAAATC
GATCATATCTCAAGCTCCCGATATCGGATTAGGGTGATTCAAAAGGCATTGGAAAGATAAGAGAT
AGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCTAGAATTTAAAGA
CATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATAT
GATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGAT
AAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTG
TATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGGCTCAA
AAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTC
AAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTTAATTTGGC
CTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGA
ATTAAATCACCCTTCATTGCATGCTC
Found at i:167622 original size:384 final size:385
Alignment explanation
Indices: 166852--167622 Score: 1101
Period size: 385 Copynumber: 2.0 Consensus size: 385
166842 TCTTATCTTA
* * * *
166852 AAGGTTGGTTGAATATTCTAGATCAATTTGGGGATGAATCTATATAATTTAAAGCTTAATTTGGC
1 AAGGTTGGCTGAATATTCTAGATCAATTTGGGAATGAATCTAGACAATTTAAAGCTTAATTTGGC
* *
166917 CTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATTCCATGCGAAAAGTGTCTTAATAAGAGAA
66 CTTAAATTCGACCAAGGGGTGGAAGACTCTTGCTATTACATGCGAAAAGTGTCTTAATAAGAGAA
* *
166982 TTAAATCACCCTTCATTGCATACTCCCTTAAAGAATATGAACAACCCTTGACTTTAGATTATAAC
131 TTAAATCACCCTTCATTGCATACTACCTTAAAGAATATGAACAACCCTTGACTTTAGATGATAAC
*
167047 AATCAGCTTTGAATGCCTTGAATGTGTGAATAAGGAGTCCTTTATGGATTCTAACTTGGCTGAAG
196 AATCAGCTTTGAATACCTTGAATGTGTGAATAAGGAGTCCTTTATGGATTCTAACTTGGCTGAAG
* *
167112 TTGAAAAGACACTCCCTTGGTTCAAACTCATTCATGCATAAAATTCCCGTAACAAAACTCCATCC
261 TTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAAATCCATCC
167177 TGCACTATCTTCAATAAATCGATCATATCTCAAGCTATCGATATCGGATTGAGGAGATTC
326 TGCACTATCTTCAATAAATCGATCATATCTCAAGCTATCGATATCGGATTGAGGAGATTC
* *
167237 AAGGTTGGCTGAATATTCTAGAT-AATTTTGGGAATGTATCTAGACAATTTGAAGCTTAATTTGG
1 AAGGTTGGCTGAATATTCTAGATCAA-TTTGGGAATGAATCTAGACAATTTAAAGCTTAATTTGG
*** * * *
167301 CCTTAAATTCTTTCATGTGGTGGAAGACTC-T-CTATTACATGCTGAAAATTGTCTTAATAAGTA
65 CCTTAAATTCGACCAAGGGGTGGAAGACTCTTGCTATTACATGC-GAAAAGTGTCTTAATAAG-A
* * * * *
167364 -AATTCAATCACTCTTCCTTGCATGCTACCTTGAAGAATATGAACAACCCTTGACTTTAGATGAT
128 GAATTAAATCACCCTTCATTGCATACTACCTTAAAGAATATGAACAACCCTTGACTTTAGATGAT
* *
167428 AACAATCAGCTTTGAATACCTTGAATGTGTGAATTAA-GAGTCCTTCTAT-GACTTTTAACTTTG
193 AACAATCAGCTTTGAATACCTTGAATGTGTGAA-TAAGGAGTCCTT-TATGGA-TTCTAACTTGG
* *
167491 CTGAAGTTGAAAAGACACTCCCGTT-GTTCAATCTCATCCATGCGTAAAATTCCCGTAA-AAAAA
255 CTGAAGTTGAAAAGACACTCCC-TTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAAA
* * * * * *
167554 TTCATGCCTGCTCTGTCTTCAATAAATCGATCATA-CTCAAGCTCTCGATATCGGATTGGGGTGA
319 TCCAT-CCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTATCGATATCGGATTGAGGAGA
167618 TTC
383 TTC
167621 AA
1 AA
167623 AAGGCATTGG
Statistics
Matches: 344, Mismatches: 34, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
383 10 0.03
384 158 0.46
385 174 0.51
386 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (385 bp):
AAGGTTGGCTGAATATTCTAGATCAATTTGGGAATGAATCTAGACAATTTAAAGCTTAATTTGGC
CTTAAATTCGACCAAGGGGTGGAAGACTCTTGCTATTACATGCGAAAAGTGTCTTAATAAGAGAA
TTAAATCACCCTTCATTGCATACTACCTTAAAGAATATGAACAACCCTTGACTTTAGATGATAAC
AATCAGCTTTGAATACCTTGAATGTGTGAATAAGGAGTCCTTTATGGATTCTAACTTGGCTGAAG
TTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAAATCCATCC
TGCACTATCTTCAATAAATCGATCATATCTCAAGCTATCGATATCGGATTGAGGAGATTC
Found at i:170619 original size:799 final size:800
Alignment explanation
Indices: 169044--170818 Score: 2204
Period size: 799 Copynumber: 2.2 Consensus size: 800
169034 AAATGAAGAC
* * * * *
169044 GATAAAGTTCTACAA-AGAACAAA-AATTAAAGTGACCTCTCAAAAATGTTTTATATATTCAAAA
1 GATAAAGTTCTACAAGAGAA-AAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAA
* * *
169107 TGTGTATATACAAATGATCCCAAAGGTGC-----T--TCTTT--AT--AGCATATGAAAAGACTT
65 TATGTATATACAAATGATCCCAAAGGTGCTTTTATAGTATTTCAATGCAGCATATGAAAAGACTC
* * **
169161 AAAAGATGGAAAATTCTCATCATTTTAGCAATAAAATGCACTTGAATTCTTTGTCTTTCATATCT
130 AAAAGAT-GAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGATTTGTCTTTCATATCT
* *
169226 TCAAGGTTGTCTGAAAATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGGAGCTTAATTTG
194 TCAAGGTTGGCTGAAAATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATTTG
*
169291 GCCTTAATTTCGTCGAAGGGGTGGAAGACTCTTACTATTTCATGCTGAAAATTGTCTTAATAAGT
259 GCCTTAATTTCGTCGAAGGGGTGGAAGACTCTTACTATTCCATGCTGAAAATTGTCTTAATAAGT
* * * * * * *
169356 GAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATTTGAACAACCCTTGACTTTAGATGAT
324 AAAATAAATCACCCTTCAATGCATGCTACCTTGAAGAATATGAACAACCCTTGACTTTAGATGAT
* *
169421 AACAAATCAGCTTCGAATGCCTTGAATGGATGAATTAAGAGTCCATCAATGTCTTGTCACTTGGA
389 AACAAATCAGCTTCGAATGCCTTGAATGGATGAATTAAGAGTCCATCAATGGCTTGTAACTTGGA
* * *
169486 TGAAATTGATAAGACTCTCAATTGTTTCAAACTGATTCAAATTATCCATGCATAAAATTCTCGTA
454 TGAAATTGAAAAGACTCTCAATTGTTTCAAAC---TTC--A--ATCCATGCATAAAATCCCCGTA
* * * *
169551 ACAAAATTCATGCCTGCACTGTCTCCAATAAATCGATCCCATCTCAAGCCCCCGATATCGGATTG
512 AAAAAATTCATGCCTACACTGTCTACAATAAATCGAT-CCATCTCAAGCCCCCGATATCGAATTG
* * * * ** * * * * *
169616 GGGTTATTCAAAGGTATTTGAAAGATATGGGGTATATAAATAATTCATAATTGATTTCTGGAACC
576 GGGTGATTCAAAGGCATTGGAAAGATATGAGACAGAGAAATAATACATAACTAATTTCTGGAACC
* ** * * * *
169681 AAACATGTCTGTATCGTATCTAGAGTTAGAAGAAATTTATACTAATATTATTGCATCTGATGAAA
641 AAACATGTATGTATCACATCCAGAGTTAGAAGAAATCTAGACTAATATTATTGAATCTGATGAAA
* *
169746 CCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGG
706 CCGTTCAACGAACGTGACACACTAGGTATATATGATGAACTAGGAACCAATGCTATAACAAAAGG
* *
169811 AAATGAAGACTATAAGACTAACTTCAAG-T
771 AAATGAAGACTACAAGACTAACTGCAAGCT
*
169840 AGATAAAGTTCTACAAGAGAAAAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAA
1 -GATAAAGTTCTACAAGAGAAAAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAA
169905 TATGTATATACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCAATGCAGCATATGAAAAGAC
65 TATGTATATACAAATGATCCCAAAGGTGC--TTTTATAGTATTTCAATGCAGCATATGAAAAGAC
* * *
169970 TCAAAAGATGAAAATTTTTCATCAATTTAGTAATAAAATGCACTTGAATGATTTGTCTTTCTTAT
128 TCAAAAGATGAAAA-TTCTCATCAATTTAGAAATAAAATGCACTTGAATGATTTGTCTTTCATAT
* *
170035 CTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGCG-ATGAATCTAGACAATTTGAAGCTTAAT
192 CTTCAAGGTTGGCTGAAAATTCTAGATCATTTTGG-GAATGAATCAAGACAATTTGAAGCTTAAT
* *
170099 TTGGCCTTAATTTCGTTC-AAGTGGTGGAGGACTC-T-CTATTCCATGCTGAAAATTGTCTTAAT
256 TTGGCCTTAATTTCG-TCGAAGGGGTGGAAGACTCTTACTATTCCATGCTGAAAATTGTCTTAAT
* *
170161 AAGTAAAATAAATCACCCTTCAATGCATGGTACCTTGAAGAATATGAACAACCCTTTACTTTAGA
320 AAGTAAAATAAATCACCCTTCAATGCATGCTACCTTGAAGAATATGAACAACCCTTGACTTTAGA
* * ** * * * *
170226 TGATAAC-AATCATCTTTGAATGCCTTGAATGTCTGAATTAAGATTCCTTCTATGGCTTTTAACT
385 TGATAACAAATCAGCTTCGAATGCCTTGAATGGATGAATTAAGAGTCCATCAATGGCTTGTAACT
* *** ** *
170290 TGGCTGTTGTTGAAAAGACAATC-CCGTTG-TTCAAAC-TC-ATCCATGCGTAAAATCCCCGTAA
450 TGGATGAAATTGAAAAGAC--TCTCAATTGTTTCAAACTTCAATCCATGCATAAAATCCCCGTAA
* * *
170351 AAAAATTCCTGCCTACACTGTCTACAATAAATCGAT-CATACTCAAGCTCTCGATATCGAATTGG
513 AAAAATTCATGCCTACACTGTCTACAATAAATCGATCCAT-CTCAAGCCCCCGATATCGAATTGG
* * * *
170415 GGTGATTCAAAAGGCATTGGAAATAT-TAGAGACAGAGAAATAATAC-TCAACTAATTTTTTGAG
577 GGTGATTC-AAAGGCATTGGAAAGATAT-GAGACAGAGAAATAATACAT-AACTAATTTCTGGAA
* * * *
170478 TCAAACATGTATGTATCACATCCAGAGTTTGAAGACATCCT-GACTAATATTCTTGAATCTGATG
639 CCAAACATGTATGTATCACATCCAGAGTTAGAAGAAAT-CTAGACTAATATTATTGAATCTGATG
* * *
170542 AATCCGTTCAACGAACGTGACACACTAGGTGTATATGATGAACTAGGAACCAATGCTTTAACAAA
703 AAACCGTTCAACGAACGTGACACACTAGGTATATATGATGAACTAGGAACCAATGCTATAACAAA
* * **
170607 AGGAATTGAAGACTACAAGACTATCTGGTAGCT
768 AGGAAATGAAGACTACAAGACTAACTGCAAGCT
* *
170640 GATAAAGTTCTACAAGAGAACAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAATAT
1 GATAAAGTTCTACAAGAGAAAAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAAT
170705 ATGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAA-GCAGCATATGAAAACG-
66 ATGTATATACAAATGATCCCAAAGGTG-CT-TTTATAGTATTTC-AATGCAGCATATGAAAA-GA
*
170768 CTCAACAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATG
127 CTCAAAAGATG-AAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATG
170819 CATATGATAA
Statistics
Matches: 846, Mismatches: 101, Indels: 60
0.84 0.10 0.06
Matches are distributed among these distances:
797 21 0.02
798 97 0.11
799 383 0.45
800 10 0.01
804 2 0.00
805 1 0.00
807 4 0.00
808 68 0.08
809 95 0.11
810 8 0.01
811 154 0.18
812 3 0.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (800 bp):
GATAAAGTTCTACAAGAGAAAAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAAT
ATGTATATACAAATGATCCCAAAGGTGCTTTTATAGTATTTCAATGCAGCATATGAAAAGACTCA
AAAGATGAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGATTTGTCTTTCATATCTTC
AAGGTTGGCTGAAAATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATTTGGC
CTTAATTTCGTCGAAGGGGTGGAAGACTCTTACTATTCCATGCTGAAAATTGTCTTAATAAGTAA
AATAAATCACCCTTCAATGCATGCTACCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAA
CAAATCAGCTTCGAATGCCTTGAATGGATGAATTAAGAGTCCATCAATGGCTTGTAACTTGGATG
AAATTGAAAAGACTCTCAATTGTTTCAAACTTCAATCCATGCATAAAATCCCCGTAAAAAAATTC
ATGCCTACACTGTCTACAATAAATCGATCCATCTCAAGCCCCCGATATCGAATTGGGGTGATTCA
AAGGCATTGGAAAGATATGAGACAGAGAAATAATACATAACTAATTTCTGGAACCAAACATGTAT
GTATCACATCCAGAGTTAGAAGAAATCTAGACTAATATTATTGAATCTGATGAAACCGTTCAACG
AACGTGACACACTAGGTATATATGATGAACTAGGAACCAATGCTATAACAAAAGGAAATGAAGAC
TACAAGACTAACTGCAAGCT
Found at i:171494 original size:714 final size:703
Alignment explanation
Indices: 170134--171533 Score: 1729
Period size: 714 Copynumber: 2.0 Consensus size: 703
170124 GGAGGACTCT
* *
170134 CTATTCCATGCTGAAAATTGTCTTAATAAGTAAAATAAATCACCCTTCAATGCATGGTACCTTGA
1 CTATTCCATGCTGAAAATTGTCTTAATAAGCAAAATAAATCACCCTTCAATGCATGCTACCTTGA
* * *
170199 AGAATATGAACAACCCTTTACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTCTGAAT
66 AGAATATGAACAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGAATGTCTGAAT
* * * **
170264 TAAGATTCCTTCTATGGCTTTTAACTTGGCTGTTGTTGAAAAGACAATCCCGTTGTTCAAACTCA
131 TAAGAGTCCTTCAATGGCTTCTAACTTGGCTGAAGTTGAAAAGAC-ATCCCGTTGTTCAAACTCA
* * * *
170329 TCCATGCGTAAAATCCCCGTAAAAAAATTCCTGCCTACACTGTCTACAATAAATCGATCATACTC
195 TCCATCCGTAAAATCCCCATAAAAAAATTCCAGCATACACTGTCTACAATAAATCGATCATACTC
* * * ** *
170394 AAGCTCTCGATATCGAATTGGGGTGATTCAAAAGGCATTGGAAATATTAGAGACAGAGAAATAAT
260 AAGCTCCCGATATCGAATTGAGGTGATTCAAAAGGCATTGGAAAGAAAAAAGACAGAGAAATAAT
* * ** * *
170459 ACTCAACTAATTTTTTGAGTCAAACATGTATGTATCACATCCAGAGTTTGAAGACATCCTGACTA
325 ACCCAACTAATTTTCTGAACCAAACATGTATGTATCACATCCAGAATTTGAAGACATCATGACTA
* * * * *
170524 ATATTCTTGAATCTGATGAATCCGTTCAACGAACGTGACACACTAGGTGTATATGATGAACTAGG
390 ATATTCTTGAATCTGATAAAACCGTTCAACGAACGTGACACACTAGCTATATACGATGAACTAGG
** * * * * * *
170589 AACCAATGCTTTAACAAAAGGAATTGAAGACTACAAGACTATCTGGTAGCTGATAAAGTTCTACA
455 AACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTACCTGGAAGCCGATAAAGCTCTACA
* *
170654 AGAGAACAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAATATATGTATATACAAAT
520 AGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATATGTATATACAAAT
* * *
170719 GATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAACGCTCAACAGATGAAAAA
585 GATCCCAAAAGTGCCTATTTATAGTATTTCTAAGCAGCATATCAAAACGCTCAAAAGATGAAAAA
*
170784 TTCTCATCAATTTAGAAATAAAATGCACTTGAATGCATATGATAAAGACTCTTG
650 TTCTCATCAATTTAGAAATAAAATGCAATTGAATGCATATGATAAAGACTCTTG
* * * * * * *
170838 CTATTCCATGCTGAAAATTGTCTTAATCAGCGAATTAAATTACCCTTCATTGTATGCTCCCTTGA
1 CTATTCCATGCTGAAAATTGTCTTAATAAGCAAAATAAATCACCCTTCAATGCATGCTACCTTGA
* * *
170903 AGAATATGAATAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGAATGTGTGATT
66 AGAATATGAACAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGAATGTCTGAAT
* * *
170968 TAAGAGTCTTTCAATGGCTTGCT-ACTTGGCTGAAGTTGAAAAAGTC-TCCC-TTGGTTTAAACT
131 TAAGAGTCCTTCAATGGCTT-CTAACTTGGCTGAAGTTG-AAAAGACATCCCGTT-GTTCAAACT
* * **
171030 CATCCAAATCATCCATGTATAAAATTCCCATAACAAAATTCCAGCATGTACTGTCTTA-AATAAA
193 CAT-C----CATCC--G--TAAAATCCCCATAAAAAAATTCCAGCATACACTGTC-TACAATAAA
171094 TCGATCATATCTCAAGCTCCCGATATC-AGATTGAGGTGATTCAAAAGGCATTGGAAAGAAAAAA
248 TCGATCATA-CTCAAGCTCCCGATATCGA-ATTGAGGTGATTCAAAAGGCATTGGAAAGAAAAAA
** * * * * *
171158 GTTAGATG-AATAATTCCCAATTGA-TTTCTGAAACCAAACATGTTTGTATCACATCTAGAATCT
311 GACAGA-GAAATAATACCCAACTAATTTTCTG-AACCAAACATGTATGTATCACATCCAGAAT-T
* * * * * *
171221 T-AAGACATTATGACTGATATTCTTGCATCTGATTAAAACCGTTCAACGAACTTGACCCTCTAGC
373 TGAAGACATCATGACTAATATTCTTGAATCTGA-TAAAACCGTTCAACGAACGTGACACACTAGC
** *
171285 TATATACGATGGGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTACCTTGA
437 TATATACGATGAACTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTACCTGGA
* * * * * *
171350 AGCCGATAAAGCTCTAGAAGAGAACAATAATGAAAGCAACCTCTCAAATATGTTTTATATCTTCA
502 AGCCGATAAAGCTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCA
* * * *
171415 AAATGTGTATATACAAATGATCCCAAAAGTGCCTCTTTATAGTATTTCTAATCAGTATATCAAAA
567 AAATATGTATATACAAATGATCCCAAAAGTGCCTATTTATAGTATTTCTAAGCAGCATATCAAAA
* * *
171480 -GACTCAAAAGATGAAAAATTCTCATCAATTTCGTAATAAAATGCAATTGTATGC
632 CG-CTCAAAAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCAATTGAATGC
171534 TTTGTATTTC
Statistics
Matches: 585, Mismatches: 91, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
702 2 0.00
703 15 0.03
704 146 0.25
705 7 0.01
708 4 0.01
710 1 0.00
712 50 0.09
713 117 0.20
714 243 0.42
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (703 bp):
CTATTCCATGCTGAAAATTGTCTTAATAAGCAAAATAAATCACCCTTCAATGCATGCTACCTTGA
AGAATATGAACAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGAATGTCTGAAT
TAAGAGTCCTTCAATGGCTTCTAACTTGGCTGAAGTTGAAAAGACATCCCGTTGTTCAAACTCAT
CCATCCGTAAAATCCCCATAAAAAAATTCCAGCATACACTGTCTACAATAAATCGATCATACTCA
AGCTCCCGATATCGAATTGAGGTGATTCAAAAGGCATTGGAAAGAAAAAAGACAGAGAAATAATA
CCCAACTAATTTTCTGAACCAAACATGTATGTATCACATCCAGAATTTGAAGACATCATGACTAA
TATTCTTGAATCTGATAAAACCGTTCAACGAACGTGACACACTAGCTATATACGATGAACTAGGA
ACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTACCTGGAAGCCGATAAAGCTCTACAA
GAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATATGTATATACAAATG
ATCCCAAAAGTGCCTATTTATAGTATTTCTAAGCAGCATATCAAAACGCTCAAAAGATGAAAAAT
TCTCATCAATTTAGAAATAAAATGCAATTGAATGCATATGATAAAGACTCTTG
Found at i:174820 original size:810 final size:807
Alignment explanation
Indices: 170828--176232 Score: 6996
Period size: 800 Copynumber: 6.7 Consensus size: 807
170818 GCATATGATA
* * * *
170828 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATCAGCGAATTAAATTACCCTTCATTGTAT
1 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* *
170893 GCTCCCTTGAAGAATATGAATAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGA
66 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAAGGCCTTGA
* * * *
170958 ATGTGTGATTTAAGAGTCTTTCAATGGCTTG-CTACTTGGCTGAAGTTGAAAAAGTCTCCCTTGG
131 ATGTGTGAATTAAGAGTCCTTCAATGGCTTGTC-ACTTGGCTGAAGTTGAAAGACTCTCCCTTGG
* * * * * *
171022 TTTAAACTCATCCAAATCATCCATGTATAAAATTCCCATAACAAAATTCCAGCATGTACTGTCTT
195 TTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCTGCCTGCACTGTCTT
*
171087 AAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAG
260 CAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAG
* * *
171152 AAAAAAGT-TAGATGAATAATTCCCAATTGATTTCTGAAACCAAACATGTTTGTATCACATCTAG
325 AAAAGA-TATAGAT-AATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCTAG
* * *
171216 AATCTT-AAGACATTATGACTGATATTCTTGCATCTGATTAAAACCGTTCAACGAACTTGACCCT
388 AAT-TTGAAGACATTATGACTGATATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCA
* * * *
171280 CTAGCTATATACGATGGGCTAGGAACCAACA-CTATAACAAAAGGAAATGAAGACTACAAGACTA
451 CTAGGTATATATGATGAGCTAGGAA-CAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTA
* * * * * *
171344 CCTTGAAGCCGATAAAGCTCTAGAAGAGAACAATAATGAAAGCAACCTCTCAAATATGTTTTATA
515 CCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATA
* * * * *
171409 TCTTCAAAATGTGTATATACAAATGATCCCAAAAGTGCCTCTTTATAGTATTTCTAATCAGTATA
580 TATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATA
* * * *
171474 TCAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTCGTAATAAAATGCAATTGTATGCTTTGT
644 TGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAG-AATAAAATGCACTTGAATGCTTTGT
* * * *
171539 ATTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATATGA
708 CTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGA
171604 AGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
773 AGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * *
171639 AAGACACTAGCTATTCCATG-TGAAAAGTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
1 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* * * * *
171703 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATTATAAAAAGCAGCTTTGAACGCCTTGA
66 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAAGGCCTTGA
* * * * * *
171768 ATGTGTGAATTATGAGTCCTT-TATGGATTCTAACTTGGCTGAAGTTGAAAAGACACTCCCTTGG
131 ATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTG-AAAGACTCTCCCTTGG
* *
171832 TTC-AA---A--C---TCATCCATGCATAATATTCCCGTAACAAAATTCCAT-CCTGCACTATCT
195 TTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCC-TGCCTGCACTGTCT
* * * * *
171887 TCAATAAATCGATCATATCTCAAGCTCTCGATATCGGATTGAGGAGATTCAAAAGGAATTGAAAA
259 TCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAA
* * * *
171952 GATAAGAGATAGATTAATAATTCCCAATT-ATTATCTTGAACCAAACATGTCTGTAT-AGCA-CC
324 GAAAAGATATAGA-TAATAATTCCCAATTGATT-TCTGGAACCAAACATGTCTGTATCA-CATCT
*
172014 AGGAATTTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCC
386 A-GAATTTGAAGACATTATGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCC
* * * *
172079 ACTAGGTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTATAATACTA
450 ACTAGGTATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTA
* * **
172144 ACTTCAAGTGGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATA
515 CCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATA
* * * *
172209 TATTCAAAATATGTATATACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCAAAGCAGCATA
580 TATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATA
* *
172274 TGAAAAGACTCAAAAGATGAAAAATTTTCATCAATTTAGTAATAAAATGCACTTGAATGATTTGT
644 TGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAG-AATAAAATGCACTTGAATGCTTTGT
*
172339 CTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGCGATGAATCTAGACAATTTGA
708 CTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGA
* *
172404 AGCTTAATTTGGCCTTAATTTCGTTCAAGTGGTGG
773 AGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * * * *
172439 AGGACTC-T-CTATTCCATGCTGAAAATTGTCTTAATAAGTAAAATAAATCACCATTCAATGCAT
1 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* * * * *
172502 GGTACCTTGAAGAATATGAACAACCCTTTACTTTAGATGATAACAATCATCTTTGGATGCCTTGA
66 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAAGGCCTTGA
* * * * * * * *
172567 ATGTCTGAATTAAGAGTCCTTCTATGGCTTTTAACTTGACTGCAGTTGAAAAGACACTCTCGTT-
131 ATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTG-AAAGACTCTC-CCTTG
* * *
172631 GTTC-AA---A--C---TCATCCATGCGTAAAATCCCCGTAAAAAAAATTCCTGCCTGCACTGTC
194 GTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGT-AACAAAATTCCTGCCTGCACTGTC
* * *
172687 TACAATAAATCGATCATA-CTCAAGCTCTCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAA
258 TTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAA
* * * * * * * * ** * *
172751 ATATAAGAGACAGAGA-AATAATGCTCAACTAATTTTTGGAGTCAAACATGTATGTATCGCATCT
323 AGA-AA-AGATATAGATAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCT
* * * * * *
172815 AGAGTTTGAAGACATTCTAACTAATATTCTTGAATCTGATGAATCCGTTCAACGAACGTGACCCA
386 AGAATTTGAAGACATTATGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCA
* * * * *
172880 CTAGGTGTATATGATGAGCTAGGAACCAATGCTTTAACAAAAGGAAATGAAGACTACAAGACTAT
451 CTAGGTATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAC
* * *
172945 CTGGTAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAATAAACTCTCAAAGATGTTTTATAT
516 CTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATAT
*
173010 ATTCAATATATGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATAT
581 ATTCAA-ATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATAT
*
173075 GAAAACG-CTCAACAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTTGT
645 GAAAA-GACTCAAAAGATGAAAAATTCTCATCAATTTAG-AATAAAATGCACTTGAATGCTTTGT
* * * *
173139 CTTTCTTATCTTCTAGGTTGGCTGAATATTCTAGATCAATTTGGGGATGAATCTAGATAATCTG-
708 CTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGA
*
173203 AGCTTAATTTGGCCTTAATTTCGACCAAGGGGTGG
773 AGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* *
173238 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTCATTGTAT
1 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* *
173303 GCTCCCTTGAAGAATATGAATAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGA
66 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAAGGCCTTGA
* *
173368 ATGTGTG-ATTCAAGAGTCTTTCAATGGCTTG-CTACTTGGCTGAAGTTGAAAAACTCTCCCTTG
131 ATGTGTGAATT-AAGAGTCCTTCAATGGCTTGTC-ACTTGGCTGAAGTTGAAAGACTCTCCCTTG
* *
173431 GTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCT
194 GTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCTGCCTGCACTGTCT
*
173496 TAAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAA
259 TCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAA
* * *
173561 GAAAAGAGT-TAGATGAATAATTCCCAATTGATTTCTGAAACCAAAAATGTTTGTATCACATCTA
324 GAAAAGA-TATAGAT-AATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCTA
*
173625 GAATCTT-AAGACATTATGACTGATATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCC
387 GAAT-TTGAAGACATTATGACTGATATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCC
* * *
173689 GCTAGCTATATACGATGAGCT---------AG------CAAAAGGAAATGAAGACTACAAGACTA
450 ACTAGGTATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTA
* * ** *
173739 CCTTGAAGCCGATAAAGTTCTAGAAGAGAACGAGAATGAAAGTAACCTCTCAAAGATGTTTTATA
515 CCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATA
* * *
173804 TATTCAAAATGTGTATATACATATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACATA
580 TATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATA
*
173869 TGAAAAGACTCAAAAGATG--AAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTAT
644 TGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAG-AATAAAATGCACTTGAATGCTTTGT
* * * * * *
173932 TTTTCATATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATAAATCAAGACAATTTGA
708 CTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGA
*
173997 TGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
773 AGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * * * * *
174032 AAGACTGTTGCTATTTCATGCTGAAAATTGTCTTAATCAGTGAAATAAATCACCTTTTATTGCAT
1 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* * *
174097 GCTCCCTTGAAGAATATTAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTG
66 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC-AATCATCTTTGAAGGCCTTG
* * *
174162 AATGTGTAAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTG
130 AATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGA-AAGACTCTCCCTTG
* * *
174227 GTTCAAACTGATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCTTGCCTGTACTGTCT
194 GTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCTGCCTGCACTGTCT
* * * * *
174292 TCAATAAATCGATCCTATCTCAAGCCCCCGATATCGGATTGGGGTGATTCAAAAGGCATTCGAAA
259 TCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAA
** * * * *
174357 GAGAATAGATATAGA-AATAATTCTTAATAGATTTATGGAACCAAACATGTCTGTATCATATCCA
324 GA-AA-AGATATAGATAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCTA
* * * **
174421 GAGTTTGAAGAAATTAAT-ACTAATATTCTTGCATCTGATGAAATTGTTCAACGAACGTGACCCA
387 GAATTTGAAGACATT-ATGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCA
*
174485 CTAGGTATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAA
451 CTAGGTATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAC
* **
174550 CTTCAAGTGGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATA-
516 CTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATAT
* * *
174614 ATTTC-AATGTGTATATACAAATGATCCGAAAGGTGCCTATTTAGAGTATTTATAAGCAGCATAT
581 A-TTCAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATAT
* * * * *
174678 GAAAAGGCTCAAAAGATGAAAAATTCCCATCAATTTAGCTATAAAAAGCATTTGAATGCTTTGTC
645 GAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAG-AATAAAATGCACTTGAATGCTTTGTC
* * * * *
174743 TTTCTTAACTTCAAGGTTGGTTGCATATTCTAGCTCATTTTGGGGATGAATCTAGATAATTTGAA
709 TTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAA
* **
174808 GCTTAATTTGGCCTTAATTTCGTTCAAGCAGTGG
774 GCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * * ** *
174842 AAGACTCTT--TATTTCATGCTGAAAATTGTGTGAATAAGTGAATTAAATCACATTTTATTGCAT
1 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* * * * * *
174905 ACTCCCTTGTAGAATATGAACAACCCTTAACTTTAGATGATAATAAATCAACTTTGAATGCCTTG
66 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAA-CAATCATCTTTGAAGGCCTTG
** * * *
174970 AGCGTGTGAATTATGAGTCCTTCAATGGCTTGTCGCTTGGAC-GAAATTGAGAAGACTCTCCCTT
130 AATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGG-CTGAAGTTGA-AAGACTCTCCCTT
* * *
175034 GGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGGACTCTC
193 GGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCTGCCTGCACTGTC
* ** * *
175099 TTCAATAAAGCGATCATA-CTCAAGCTTTCGATATCAGATTGGGGTGATTCAAAAGGCACTGG-A
258 TTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAA
* * * * * * *
175162 AGATAAGAGACAGAGA-AATAATTCTCAACTGATTTCTGGAGCCAAACATGTATGTATCGCATCT
323 AGA-AA-AGATATAGATAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCT
* * * * * *
175226 AGAGTTTGATGGCATTATGACTAATATTCTTGAATCTGATGAAACCGTTCAATGAACGTGACCCA
386 AGAATTTGAAGACATTATGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCA
* *
175291 CTAGGTATATATGATGAGCTAGGAA-ACAAGGCTATAAAAAAAGGAAATGAAGACTACAAGACTA
451 CTAGGTATATATGATGAGCTAGGAACA-AAAGCTATAACAAAAGGAAATGAAGACTACAAGACTA
* * *
175355 TCTTGAAGGCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATT
515 CCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATA
*** *
175420 TATTCAAAATGTGTATATACAAATGATCCCAAAGGTATATATTTATAATATTTCTAAGCAGCATA
580 TATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATA
*
175485 TGAAAACG-CTCAACAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTTG
644 TGAAAA-GACTCAAAAGATGAAAAATTCTCATCAATTTAG-AATAAAATGCACTTGAATGCTTTG
* * *
175549 TCTTTCTTATATTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTATAAAATTTG
707 TCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTG
* * *
175614 AAGCTTAATTTGACCTTAATTTCGACTAAGGGGTGG
772 AAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
*
175650 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCAT
1 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* *
175715 GCTCCCTTGAAGAATATGAATAACCCTTGAATTTAGATGATAACAATCATCTTTGAAGGCCTTGA
66 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAAGGCCTTGA
* * * *
175780 ATGTGTGATTTAAGAGTCATTCAATGGCTTGTTACTTGGCTGAAGTTGAAAAACTCTCCCTTGGT
131 ATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAGACTCTCCCTTGGT
* * * * *
175845 TCAAACTCATCCAAATCATCTATGCATAAAATT-CCATAACAAATTTCCAGCCTGCACTGTCTTA
196 TCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCTGCCTGCACTGTCTTC
* *
175909 AATAAATCGATCATATCTCAAGCACCCGATATCAGATTGAGGT-CTCTCAAAAGGCATTGGAAAG
261 AATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGAT-TCAAAAGGCATTGGAAAG
* * * *
175973 AAAAGAGATAGATGAA-AATTCCCTATTGATTTCTGAAACCAAACATATCTGTA-CGACATCTAG
325 AAAAGATATAGAT-AATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATC-ACATCTAG
* * * *
176036 AATATGAAGACATTCTGACTGATATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGC
388 AATTTGAAGACATTATGACTGATATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCAC
* * *
176101 TAGCTATATACGATGAGCTAGGAACCAACA-CTATAACAAAAGGAAATGAAGACTACAAGACTAC
452 TAGGTATATATGATGAGCTAGGAA-CAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAC
* * * * * *
176165 CTTTAAGCCGATAAAGTTCTAGAAGAGAACGAGAATGAAAGCAACCTCTCAAAGATGTTTTCTAT
516 CTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATAT
176230 ATT
581 ATT
176233 GTCACGGGCT
Statistics
Matches: 4010, Mismatches: 492, Indels: 186
0.86 0.10 0.04
Matches are distributed among these distances:
793 96 0.02
794 132 0.03
795 259 0.06
796 209 0.05
797 5 0.00
798 17 0.00
799 159 0.04
800 859 0.21
801 371 0.09
802 8 0.00
804 4 0.00
805 3 0.00
806 232 0.06
807 92 0.02
808 708 0.18
809 361 0.09
810 476 0.12
811 19 0.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (807 bp):
AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAAGGCCTTGA
ATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAGACTCTCCCTTGGT
TCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCTGCCTGCACTGTCTTC
AATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGA
AAAGATATAGATAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCTAGAAT
TTGAAGACATTATGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGG
TATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTACCTTGA
AGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCA
AATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAG
ACTCAAAAGATGAAAAATTCTCATCAATTTAGAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
TTGGCCTTAATTTCGTCCAAGGGGTGG
Found at i:182577 original size:808 final size:810
Alignment explanation
Indices: 181006--192905 Score: 15862
Period size: 808 Copynumber: 14.8 Consensus size: 810
180996 GGGGCGTGAC
* * * * *
181006 TATATTCAAAATGTGTATATACATATGATCCAAAAGGTGCCTCTTTATAGTATATCTAAGCAACA
1 TATATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* *
181071 TATGAAAAGACTCAAAAGATG--AAATTCTCATCAATTTAGCAATAAAATGCACTTGACTGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* * * * * * ** * *
181134 ATTTTTCATATCATCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAAAAAATCAAGACAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
* *
181199 GAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTGTTGCTATTTCATGCTGAAAAT
195 GAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTT-CTATTTCATGCTGAAAAT
* * *
181264 TGTCTTAATAAGTGAAATAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATTAACAACGCTT
259 TGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTT
* * *
181329 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTTAATGTCTGAATTAAGAGTCCTTCAAAGG
324 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
* * * * *
181394 CTTGTCACTTGGATGTAATTGAGAAGACTGTCCCTTGGTTCAAACTGATCCAAATCATCCATGCG
389 CTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
* * * *
181459 TAAAATTCCCGTAACAAAATTCATGCCTGTACTGCCTTCAATAAATCGATCCTATCTCAAGCCCC
454 TAAAATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCC
* * * * * *
181524 CAATATCGGATTGGGGTGATTCAAAAGGCATTCGAAATATAAGAGATATAGAAATAATTCTTAAT
519 CGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAAT
* * *
181589 GGATTTCTGGAACCAAACATGTCTGTATCGTATCCAGAGTTTGAAGAAATTAAT-ACTAATATTC
584 TGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTTTGAAGACATT-ATGACTAATATTC
*
181653 TTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGG-AACAA
648 TTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAAC-A
* *
181717 AAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTCAAGCGGATAAAGTTCTACAAGAGA
712 AAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGA
181782 ACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
777 ACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * * * *
181816 TA-ATTTC-AATGTGTATATACAAATGATCCGAAAGGTGCCTATTTAGAATATTTATAAGCAACA
1 TATA-TTCAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* *
181879 TATGAAAAGGCTCAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAAAT-TACTTGAATGCTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAAT-AAAATGCACTTGAATGCTT
* * *
181943 TGTCTTTCTTAACTTCAAGGTTGGCTGAATATTCTAGCTCATTTTGGGGATGAATCTAGATAATT
129 TGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATT
* *
182008 TGAAGCTTAATTTGGCCTTAATTTCGTTCATGTGGTGGAAGACTCTT-TATTTTCATGCTGAAAA
194 TGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTTCTA-TTTCATGCTGAAAA
* * * * * *
182072 TTGTGTGAATAAGTGAATTAAATCACATTTTATTGCATGATCCCTTGAAGAATATGAAAAACCTT
258 TTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCT
* * *
182137 TAACTTTAGATGATAACAAATCAGCTTTGAATGCCTTAAACGTGTGAATTAAGAGTCCTTCAATG
323 TGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
**
182202 GCTTGTCACTTGGACGAAATTGAGAAGACTCTCTTTTGGTTCAAACTCATCCAAATCATCCATGC
388 GCTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
* * * *
182267 ATAAAATTCCCGTAACAAAATTCAAGCCTGGACTCTCTTCAATAAAGCGATCATA-CTCAAGCTC
453 ATAAAATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTC
* * * *
182331 CCGATATCAGATTGGGGTGATTTAAAAGGCACTGGAAAGATAAGAGACAGAGAAATAATTCACAA
518 CCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAA
* * * *
182396 CTGATTTCTGGAGCCAAACATGTATGTATCGCATCCAGAGTTTGATGACATTATGACTAATATTC
583 TTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTTTGAAGACATTATGACTAATATTC
* * * * *
182461 TTGAATCTGGTGAAACCGTTCAATGAATGTGACCCACTAGGTATATATGATGAGCTATGAAACAA
648 TTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAACAA
** * * *
182526 TTCTATAATAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAA
713 AGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAA
*
182591 CAAGAATGAAAAAAAACTCTCAAAGATGTTTTA
778 CAAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * * *
182624 TTTATTCAAAATATGTATATACAAATGATCCCAAAGGTGTCTATTTATAGTATTTGTAAGCAGCA
1 TATATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* * *
182689 TATGAAAACGCTCAACAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* *
182754 GTCTTTCTTATCTTCAAGTTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTATAAAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
* * *
182819 GAAGCTTAATTTGGCCTTAATTTCG-ACTAAGGGGTGGAAGACTCCTGCTATTCCATGCTGAAAA
195 GAAGCTTAATTTGGCCTTAATTTCGTTC-AAGGGGTGGAAGACT-CTTCTATTTCATGCTGAAAA
* * * * * *
182883 TTGTCTTAATAAGCGAATTAAAACACCCTTCATTGCATGGTCCCTTGAAGAATATGAATAACCCT
258 TTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCT
* * * * * * *
182948 TGACTTTAGATGATAAC-AATCATCTTTGAAGGCCTAGATTGTGTTATTTAAGAGTCATTCAATG
323 TGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* * * * *
183012 GATTGTTACTTGG-CTGAAGTTGA-AAAACTCTCCCTTGGTTCAAACTCATCCAAATCATCTATG
388 GCTTGTCACTTGGAC-GAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATG
* **
183075 CATAAAATT-CCATAACAAAATTCCA-GCCTGCACTGTCTAAAATAAATCGATCATATCTCAAGC
452 CATAAAATTCCCGTAACAAAATT-CATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGC
** * * *
183138 TCCCGATATCAGATTAAGGTGACTCAAAAGGCATTGGAAAGAAAAGAGATAGATGAAA-AATTCC
516 TCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGA-GAAATAATTCT
* ** * * * * * *
183202 CTATTGATTTCTAAAACCAAACATATCTGTA-CGACATCTAGAATATGAAGACATTCTGACTGAT
580 CAATTGATTTCTGGAACCAAACATGTCTGTATCG-CATCCAGAGTTTGAAGACATTATGACTAAT
* * * * *
183266 ATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGCTAGCTATATACGATGATCTAGGA
644 ATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGA
* * *
183331 ACCAACA-CTATAACAAAAGGAAATGAAGACTACAAGACTACCTTGAAGCCGATAAAGTTCTAGA
708 AACAA-AGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACA
*
183395 AGAGAACGAGAAT-AAAAGC-AACTTCTCAAAGATGTTTTA
772 AGAGAACAAGAATGAAAA-CAAAC-TCTCAAAGATGTTTTA
* * * * *
183434 TATATTCAAAATGTGTATACACATATGATCCCAAACGTGCCTCTTTATAGTATTTCTAAGCAACA
1 TATATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
*
183499 TATGAAAAGACTCAAAAGATG--AAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* * * * * * * * *
183562 ATTTTTCATATCTTCAAGGTTGTCTGAAAATTCTAGATCATTTTGGGAATAAATCAAGACAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
* *
183627 GAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTGTTGCTATTTCATGCTGAAAAT
195 GAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTT-CTATTTCATGCTGAAAAT
* * * *
183692 TGTCTTAATCAGTGAAATAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATTAACAACGCTT
259 TGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTT
* * *
183757 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTTAATGTCTGAATTAAGAGTCCTTCAAAGG
324 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
* * * * *
183822 CTTGTCACTTGGATGTAATTGAGAAGACTGTCCCTTGGTTCAAACTGATCCAAATCATCCATGCG
389 CTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
* * * *
183887 TAAAATTCCCGTAACAAAA-TCGATGCTTGTACTGTCTTCAATAAATCGATCCTATCTCAAGCCC
454 TAAAATTCCCGTAACAAAATTC-ATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTC
* * * *
183951 CCGATATCGGATTGGGGTGATTCAAAAGGCATTCGAAAGATAAGAGATATAGAAATAATTCTTAA
518 CCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAA
* * *
184016 TTGATTTCTGGATCCAAACATGTCTGTATCGTATCCAGAGTTTGAAGAAATTCAT-ACTAATATT
583 TTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTTTGAAGACATT-ATGACTAATATT
* *
184080 CTTGCATCTGATGAAACTGTTCAAAGAACGTGACCCACTAGGTATATATGATGAGCTAGG-AACA
647 CTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAAC-
* * *
184144 AAAGCTATAACAAAAGGAAATGAAGACTACATGACTAACTTCAAGCGGATAAAGTTCTACAAGAG
711 AAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAG
*
184209 AACAAGAATGAAAACAAACTCTCAAAGATATTTTA
776 AACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * * *
184244 TA-ATTTC-AATGTGTATATACAAATTATCCGAAAGGTGCCTATTTAGAGTATTTATAAGCAGCA
1 TATA-TTCAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* *
184307 TATGAAAAGGCTCAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAAAGCACTTGAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* * * * *
184372 GTCTTTCTTAACTTCAAGGTTGGCTGAATATTTTAGCTCATTTTGGGGATGAATATAGATAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
* *
184437 GAAGCTTAATTTGGTCTTAATTTCGTTCAAGTGGTGGAAGACTCTT-TATTTCATGCTGAAAATT
195 GAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTTCTATTTCATGCTGAAAATT
* * * *
184501 GTGTGAATAAGTGAATTAAATCACATTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTA
260 GTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTG
* **
184566 ACTTTAGATGATAAAAAATCAGCTTTGAATGCCTTGAGCGTGTGAATTAAGAGTCCTTCAATGGC
325 ACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGC
184631 TTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCAT
390 TTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCAT
* * ** * *
184696 AAAATTCCAGTAACAAAATTCATGCCTGGACACTCTTCAATAAAGCGATCATA-CTCAAGTTCCC
455 AAAATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCC
* * *
184760 GATATCAGATTGGGGTGATTCAAAAGGCAATGGAAAGATAAGAGACAGAGAAATAATTCTCAACT
520 GATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAATT
* * * * *
184825 GATTTCTGGAGCCAAACATGTATGTATCACATCTAGAGTTTGATGACATTATGACTAATATTCTT
585 GATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTTTGAAGACATTATGACTAATATTCTT
* * * * *
184890 GAATCTGATGAAACCGTTCAATGAATGTGACCCGCTAGGTATATATGATGAGCTAGGAAACAATG
650 GCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAACAAAG
* *
184955 CTATAAGAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACA
715 CTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAACA
185020 AGAATGAAAACAAACTCTCAAAGATGTTTTA
780 AGAATGAAAACAAACTCTCAAAGATGTTTTA
* * *
185051 TTTATTCAAAATATGTATATACAAATGATCCCAAAGGTGTCTATTTATAGTATTTCTAAGCAGCA
1 TATATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* * * * *
185116 TATGAAAACGCTCAACAGGTGAAAAATTCTCATCAATTTAGAAATGAAATGCACTTGAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* *
185181 GTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTATAAAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
* **
185246 GAAGCTTAATTTGGCCTTAATTTCGACTC-AGGGGTGGAAGACTCTTGCTATACCATGCTGAAAA
195 GAAGCTTAATTTGGCCTTAATTTCG-TTCAAGGGGTGGAAGACTCTT-CTATTTCATGCTGAAAA
* * * * *
185310 TTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATTTGAATAACCCT
258 TTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCT
* * * * *
185375 TGACTTTAGATGATAAC-AATCATCTTTGAAGGCTTTGAATGTGTGATTTAAGAGTCATTCAATG
323 TGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* * * * *
185439 GCTTGTTACTTGG-CTGAAGTTGA-AAAACTCTCCCTTGCTTCAAACTCATCCAAATCATCTATG
388 GCTTGTCACTTGGAC-GAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATG
* * *
185502 CATAAAATT-CCATAACAAAATTCCA-GCCTGCACTGTCTTAAATAAATCGATCATATTTCAAGC
452 CATAAAATTCCCGTAACAAAATT-CATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGC
* * * * *
185565 TCCCAATATCAGATTGAGGTGACTCAAAAGGCATTGGAAAGAAAAGAGATAGATG-AA-AATTCC
516 TCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGA-GAAATAATTCT
* * * * * * * * * *
185628 CTATTGATTTCTGAAACCAAATATATTTGTA-CGACATCTAGAATATGAAGACATTCTGACTGAT
580 CAATTGATTTCTGGAACCAAACATGTCTGTATCG-CATCCAGAGTTTGAAGACATTATGACTAAT
* * * *
185692 ATTCTTGCATCTGATTAAAACCGTTCAACGAACGTTACCCGA-TAGCTATATACGATGAGCTAGG
644 ATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCC-ACTAGGTATATATGATGAGCTAGG
* * *
185756 AACCAACA-CTATAACAAAAGGAAATGAAGACTACAAGACTACCTTGAAGCCGATAAAGTTCTAG
707 AAACAA-AGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTAC
*
185820 AAGAGAAC--G-A-G---ACAACCTCTCAAAGATGTTTTA
771 AAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * *
185853 TATATTCAAAATGTGTATATACATATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACA
1 TATATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* *
185918 TATGAAAAGACTCAAAAGATG--AAATTCTCATCAATTTAGCAATAAAATGCACTTTAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* * * * * * * *
185981 ATTTTTCATATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATAAATCAAGACAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
* * * *
186046 AAAGCTTAATTTGGCCTTAATTTCGTCCAAAGGGTGGAAGACTGTTGCTATTTCATGCTGAAAAT
195 GAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTT-CTATTTCATGCTGAAAAT
* * * *
186111 TGTCTTAATCAGTGAAATAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATTAACAACGCTT
259 TGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTT
* * *
186176 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTCTAAATTAAAAGTCCTTCAATGG
324 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
* * * *
186241 CTTGACACTTGGATGTAATTGAGAAGACTCTCCCTTGGTTCAAACTGATCCAAATCATCCATGCA
389 CTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
** *
186306 TAAAATTCCCGTAACAAAATTCATGCCTATACTGTCTTCAATAAATCGATCCTATCTCAAGC-CC
454 TAAAATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCC
** * * *
186370 TCGATATTGGATTGGGGTGATTCAAAAGGCATTCGAAAGATAAGAGATATAGAAATAATTCTTAA
519 -CGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAA
* *
186435 TTGATTTCTGGAACCAATA-ATGTCTGTATCGTATCCAGAGTTTGAAGAAATTCAT-ACTAATAT
583 TTGATTTCTGGAACCAA-ACATGTCTGTATCGCATCCAGAGTTTGAAGACATT-ATGACTAATAT
*
186498 TCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGG-AAC
646 TCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAAC
* * *
186562 AAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACCTCAAGCGGATAAAGTTCTACAAGA
711 -AAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGA
186627 GAACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
775 GAACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * * * * *
186663 TA-ATTTC-AATTTGTATATACAAATTATCCGAAAGGTCCCTATTTAGAGTATTTATAAGCAGCA
1 TATA-TTCAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* * * *
186726 TGTGAAAAGGCTCAAAAGATGAAAAATTC-CAATTAATTTAGCAATAAAAAGAACTTGAATGCTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTC-ATCAATTTAGCAATAAAATGCACTTGAATGCTT
* * * * *
186790 TGCCTTTCTTAACTTCAAGGTTGGCTGAATATTCTAGCTCATTTTGGGGATGAATCTGGATAATT
129 TGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATT
*
186855 TGAAGCTTAATTTGGCCTTAATTTCGTTCAAGTGGTGGAAGACTCTT-TATTTCATGCTGAAAAT
194 TGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTTCTATTTCATGCTGAAAAT
* * *
186919 TGTGTGAATAAGTGAATTAAATCACATTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTT
259 TGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTT
* * **
186984 AAATTTAGATGATAACAAATCAGCTTTGAATGCCTTGAGCGTGTGAATTAAGAGTCCTTCAATGG
324 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
*
187049 CTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTAAAACTCATCCAAATCATCCATGCA
389 CTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
* * ** * *
187114 TAAAATTCCAGTAACAAAATTCATGCCTGGACACTCTTCAATAAAGCGATCATA-CTCAAGTTCC
454 TAAAATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCC
* * * *
187178 CGATATCAGATTGGGGTGATTCAAAAGGCAATGGAAAGATAAGAGACAAAGAAATAATTCTCAAC
519 CGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAAT
* * * * *
187243 TGATTTCTGGAGCCAAACATGTATGTATCACATCTAGAGTTTGATGACATTATGACTAATATTCT
584 TGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTTTGAAGACATTATGACTAATATTCT
* * * * *
187308 TGAATCTGATGAAACCGTTCAATGAATGTGACCCGCTAGGTATATATGATGAGCTAGGAAACAAT
649 TGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAACAAA
* *
187373 GCTATAAGAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
714 GCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAAC
187438 AAGAATGAAAACAAACTCTCAAAGATGTTTTA
779 AAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * * *
187470 TTTATTCAAAATATGTATATACAAATGATTCCAAAGGTGTCTATTTATAGTATTTCTAAGCAGCA
1 TATATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
** * *
187535 TATGAAAACTCTCAACAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
*
187600 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTATAAAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
* * **
187665 GAAGCTTAATTTGGCCTTAATTTCGACTC-AGGGGTTGAAGACTCTTGCTATACCATGCTGAAAA
195 GAAGCTTAATTTGGCCTTAATTTCG-TTCAAGGGGTGGAAGACTCTT-CTATTTCATGCTGAAAA
* * * * *
187729 TTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATTTGAATAACCCT
258 TTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCT
* * * * *
187794 TGACTTTAGATGATAAC-AATCATCTTTGAAGGCTTTGAATGTGTGATTTAAGAGTCATTCAATG
323 TGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* * * * *
187858 GCTTGTTACTTGG-CTGAAGTTGA-AAAACTCTCCCTTGCTTCAAACTCATCCAAATCATCTATG
388 GCTTGTCACTTGGAC-GAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATG
* * *
187921 CATAAAATT-CCATAACAAAATTCCA-GCCTGCACTGTCTTAAATAAATCGATCATATTTCAAGC
452 CATAAAATTCCCGTAACAAAATT-CATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGC
* * * * * *
187984 TCCCAATATCAGATTGAGGTGACTCAAAAGGCATTGGAAAAAAAAGAGATAGATG-AA-AATTCC
516 TCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGA-GAAATAATTCT
* * * * * * * * * *
188047 CTATTGATTTATGAAACCAAACATATATGTA-CGACATCTAGAATATT-AAGACATTCTGATTGA
580 CAATTGATTTCTGGAACCAAACATGTCTGTATCG-CATCCAGAGT-TTGAAGACATTATGACTAA
* ** ** *
188110 TATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGGTAGCCATATACGATGAGCTAGG
643 TATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGG
* * * *
188175 AACCAACA-CTATAACAAAAGGAAATGAAGACTACAAGACTACCTTGAAGCCGATAATGTTCTAG
707 AAACAA-AGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTAC
*
188239 AAGAGAAC--G-A-G---ACAACCTCTCAAAGATGTTTTA
771 AAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * *
188272 TATATTCAAAATGTGTATATACATATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACA
1 TATATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* *
188337 TATGAAAAGACTCAAAAGATG--AAATTCTCATCAATTTAGCAATAAAATGCACTTTAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* * * * * * * *
188400 ATTTTTCATATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATAAATCAAGACAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
* * * * *
188465 AAAGCTTAAATTGGCCTTAATTTCGTCCAAAGGGTGGAAGACTGTTGCTATTTCATGCTGAAAAT
195 GAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTT-CTATTTCATGCTGAAAAT
* * *
188530 TGTCTTAATCAGTGAAATAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATAAACAACCCTT
259 TGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTT
* * *
188595 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTCTAAATTAAAAGTCCTTCAATGG
324 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
* * * *
188660 CTTGACACTTGGATGTAATTGAGAAGACTCTCCCTTGGTTCAAACTGATCCAAATCATCCATGCA
389 CTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
* * * * *
188725 TAAAATTCCCTTAACAAAATTCATGCTTGTACTGTCTTCAATAAATCGATCCTATCTCAAGCCCC
454 TAAAATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCC
* * * * *
188790 CGATATCGGATTGGGGTGATTCAAAAGGCATTCGAAAGATAAGAGATATAGAAATAATTATTAAT
519 CGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAAT
* *
188855 TGATTTCTGGAACCAATA-ATGTCTGTATCGTATCCAGAGTTTGAAGAAATTCAT-ACTAATATT
584 TGATTTCTGGAACCAA-ACATGTCTGTATCGCATCCAGAGTTTGAAGACATT-ATGACTAATATT
*
188918 CTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGG-AACA
647 CTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAAC-
* *
188982 AAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTCAAGCGGATAAAGTTCTACAAGAG
711 AAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAG
189047 AACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
776 AACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * * * *
189082 TA-ATTTC-AATGTGTATATACAAATTATCCGAAAGGGGCCTATTTAGAGTATTTATAAGCAGCA
1 TATA-TTCAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* * * *
189145 TATGAAAAGGCTCAAAAGATGAAAAATTCCCATTAATTTAGCAATAAAAAGAACTTGAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* * * * *
189210 GCCTTTCTTAACCTCAAGGTTGGCTGAATATTCTAGCTCATTTAGGGGATGAATCT-G-------
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
*
189267 G-A---TAATTTGGCCTTAATTTCGTTCAAGTGGTGGAAGACTCTT-TATTTCATGCTGAAAATT
195 GAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTTCTATTTCATGCTGAAAATT
* * * *
189327 GTGTGAATAAGTGAATTAAATCACATTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTA
260 GTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTG
**
189392 ACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAGCGTGTGAATTAAGAGTCCTTCAATGGC
325 ACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGC
189457 TTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCAT
390 TTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCAT
* * * ** * * *
189522 AAAATTCCAGTAACAAAATTCATGCATGGACACTCTTCAATAAAGCAATCATA-CTCAAGTTCCC
455 AAAATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCC
* * * * *
189586 GATATCCGATTGGGGTGATTCAAAAGGCACTGGAAAGATAAGAGACAGATAAATAATTCTCAACT
520 GATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAATT
* * * *
189651 GATTTCTGGAGCCAAACATGTATGTATCGCATCTAGAGTTTGATGACATTATGACTAATATTCTT
585 GATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTTTGAAGACATTATGACTAATATTCTT
* * * * * *
189716 GAATCTGATGAAATCGTTCAATGAACGTGACCCGCTAGGTATATATGATGAGCTAGGAAATAATG
650 GCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAACAAAG
* *
189781 CTATAACAAAAGGAAATGAAGACTACAAGACTATCTTAAAGCCGATAAAGTTCTACAAGAGAACA
715 CTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAACA
189846 AGAATGAAAACAAACTCTCAAAGATGTTTTA
780 AGAATGAAAACAAACTCTCAAAGATGTTTTA
* * * *
189877 TTTATTCAAAATATGTATATACAAATGATCCCAAAGGTGTCTATTTATAGTATTTCTAAGAAGCA
1 TATATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* * *
189942 TATGAAAACGCTCAACAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* *
190007 GTCTTTCTTATCTTCAAGGTTGGCTGGATATTCTAGATCATTTTGGGGATGAATCTATAAAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
* *
190072 GAAGCTTAATTTGGCCTTAATTTCG-ACTAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAA
195 GAAGCTTAATTTGGCCTTAATTTCGTTC-AAGGGGTGGAAGACTCTT-CTATTTCATGCTGAAAA
* * * *
190136 TTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAATAACCCT
258 TTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCT
* * * *
190201 TGACTTTAGATGATAAC-AATCATCTTTGAAGGCCTTGAATGTGTGATTTAAGAGTCATTCAATG
323 TGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* * * * *
190265 GCTTCTTACTTGG-CTGAAGTTGA-AAAACTCTCCCTTGGTTCAAACTCATCCAAATCATCTATG
388 GCTTGTCACTTGGAC-GAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATG
* * *
190328 CATAAAATT-CCATAACAAATTTCCA-GCCTGCACTGTCTTAAATAAATCGATCATATCTCAAGC
452 CATAAAATTCCCGTAACAAAATT-CATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGC
* * * *
190391 ACCCGATATCAGATTGAGGTGACTCAAAAGGCATTGGAAAGAAAAGAGATAGATG-AA-AATTC-
516 TCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGA-GAAATAATTCT
* * * * * * * *
190453 CTTATTGATTTCTGAAACCAAACATATCTGTA-CGACATCTAGAATATGAAGACATTCTGACTGA
580 C-AATTGATTTCTGGAACCAAACATGTCTGTATCG-CATCCAGAGTTTGAAGACATTATGACTAA
* * * * *
190517 TAATCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGCTAGCTATATACGATGAGCTAGG
643 TATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGG
* * * *
190582 AACCAACA-CTATAACAAAAGGAAATGAAGACTATAAGACTACCTTGAAGCCGATAAAGTTCTAG
707 AAACAA-AGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTAC
* * *
190646 AAGAGAACGAGAATGAAAGCAACCTCTCAAAGATGTTTTA
771 AAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * * *
190686 TACATTCAAAATGTGTATATACATATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAACA
1 TATATTC-AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
*
190751 TATGAAAAGACTCAAAAGATG--AAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* * * * * * * * *
190814 ATTTTTCATATCTTCAAGGTTGTCTAAATATTCTAGATCATTTTGGGAATAAATCAAGACAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
* *
190879 GAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTGTTGCTATTTCATGCTGAAAAT
195 GAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTT-CTATTTCATGCTGAAAAT
* * *
190944 TGTCTTAATCAGTGAAATAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATTAACAACCCTT
259 TGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTT
* *
191009 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTCTAAATTAAGAGTCCTTCAATGG
324 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
* * * *
191074 CTTGTCACTTGGATGAAATTGAAAAGACTCTCCCTTGGTTCAAACTGATCCAAATCATCCATGCG
389 CTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
* * * * *
191139 TAAAATTCCCGTAACAAAATTCATGCTTGTACTCTCTTCAATAAATCGATCCTATCTCAAGCCCC
454 TAAAATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCC
* * * *
191204 CGATATCGGATTGGGGTGATTCAAAAGGCATTCGAAAGATAAGAGATATAGAAATAATTCTTAAT
519 CGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAAT
* ** * *
191269 TGATTTATGGAACCAAACATGTCTGTATCATATCCAGAGTTTGAAGAAAATAATG-CTAATATTC
584 TGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTTTGAAG-ACATTATGACTAATATTC
**
191333 TTGCATCTGATGAAATTGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGG-AACAA
648 TTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAAC-A
* ** *
191397 AAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTCAAGAGGGTAAAGTTCTACAAGAGA
712 AAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGA
191462 ACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
777 ACAAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * * *
191496 TA-ATTTC-AATGTGTATATACAAATTATCCGAAAGGTGCCTATTTAGAGTATTTATAAGCAGCA
1 TATA-TTCAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* * * * *
191559 TATGAAAAGGCTCAAAAGATGAAAAAGTCCCATCAATTTAGCTATAAAAAGCATTTGAATGCTTT
65 TATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTT
* * * * * * *
191624 GTCTTTCTTAACTTCAGGGTTGGTTGCATATTCTAGCTCATTTTGGGGATGAATATAGATAATTT
130 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTT
*
191689 GAAGCTTAATTTGGCCTTAATTTCGTTCAAGTGGTGGAAGACTCTT-TATTTCATGCTGAAAATT
195 GAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTTCTATTTCATGCTGAAAATT
*
191753 GT-TTGAATAAGTGAATTAAATCACATTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTT
260 GTCTT-AATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTT
* * * * *
191817 AACTTTAAATGATAACAAATCAGCTTTGAATACCTTGAACGTATGAATTAAGAGTCCTTCAATGG
324 GACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
191882 CTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
389 CTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
* *
191947 TAAAATTCCCGTAACAAAATTCATGCCTAG-ACTCTCTTCAATAAAGCGATCATA-CTCAAGCTC
454 TAAAATTCCCGTAACAAAATTCATGCCT-GCACTGTCTTCAATAAATCGATCATATCTCAAGCTC
* * *
192010 CCGATATCAGATTGGGGTGATTCAAAATGCACTGGAAAGATAAGAGACAGAGAAATAATTCTCAA
518 CCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAA
* * * *
192075 CTGATTTCTGGAGCCAAACATGTATGTATCGCATCCAGAGTTTGATGACATTATGACTAATATTC
583 TTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTTTGAAGACATTATGACTAATATTC
* * *
192140 TTGAATCTGATGAAACCGTTTAATGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAACAA
648 TTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAACAA
* * *
192205 TGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTATAAGAGAA
713 AGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAA
* *
192270 CAAGAATGAAAACAAACTCTCAAAGTTATTTTA
778 CAAGAATGAAAACAAACTCTCAAAGATGTTTTA
* * *
192303 TTTATTCAAAATGTGTATATACATATGATCCCAAAAGG-GTCTATTTATAGTATTTCTAAGCAGC
1 TATATTC-AAATGTGTATATACAAATGATCCC-AAAGGTGCCTATTTATAGTATTTCTAAGCAGC
* * * *
192367 ATATGAAAACGCTCAACAGATGAAAAATTCTCATAAATTTAGAAATAAAATGCACTTGAATGCTT
64 ATATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTT
*
192432 TGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTATAAAATT
129 TGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATT
* * *
192497 TGAAGCTTAATTTGGCCTTAATTTCG-ACTAAGGGGTGGAAGACTCTAGCTATTCCATGCTGAAA
194 TGAAGCTTAATTTGGCCTTAATTTCGTTC-AAGGGGTGGAAGACTCT-TCTATTTCATGCTGAAA
* * * *
192561 ATTATCTTAATAAGCGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
257 ATTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCC
* * * * *
192626 TTGATTTTAGATTATAAC-AATCATCATTT-AATGCCTTGAATGTGAGAATTAAGAGTCCTTCTA
322 TTGACTTTAGATGATAACAAATCAGC-TTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAA
* * * * * *
192689 TGGCTTCTAACTTGG-CTAAAGTTGAAAAGACACTCCCTTGGTTCAAGCTCAT-C----C-T-C-
386 TGGCTTGTCACTTGGACGAAA-TTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCA
* * *
192745 -GCTTAAAATTCCCGTAACAAAATTCCAT-CCTCCACTGTCTTCAATAAATCGATCCTATCTCTA
450 TGCATAAAATTCCCGTAACAAAATT-CATGCCTGCACTGTCTTCAATAAATCGATCATATCTC-A
* *
192808 A-C-CCGCGATATCAGATTGGGGTGATTCAAAAGGCATTCGAAAGATAAGAGATATAGAAATAAT
513 AGCTCC-CGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAAT
* *
192871 TCTTAATTGATTTCTGGAACCAAACATGTTTGTAT
577 TCTCAATTGATTTCTGGAACCAAACATGTCTGTAT
192906 GGTATCTGCA
Statistics
Matches: 9657, Mismatches: 1242, Indels: 390
0.86 0.11 0.03
Matches are distributed among these distances:
794 3 0.00
795 271 0.03
796 244 0.03
797 156 0.02
798 35 0.00
799 2 0.00
800 445 0.05
801 162 0.02
802 390 0.04
803 391 0.04
804 124 0.01
805 14 0.00
806 16 0.00
807 1045 0.11
808 1970 0.20
809 1922 0.20
810 1794 0.19
811 660 0.07
812 13 0.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (810 bp):
TATATTCAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCAT
ATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTG
TCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTTG
AAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTTCTATTTCATGCTGAAAATTG
TCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGA
CTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCT
TGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATA
AAATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCG
ATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAGAAATAATTCTCAATTG
ATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTTTGAAGACATTATGACTAATATTCTTG
CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAAACAAAGC
TATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAACAA
GAATGAAAACAAACTCTCAAAGATGTTTTA
Found at i:199170 original size:811 final size:812
Alignment explanation
Indices: 193010--200478 Score: 9889
Period size: 811 Copynumber: 9.3 Consensus size: 812
193000 TCAATGGTGC
* * * *
193010 CTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCTCCTTTTATTGCATTCTC
1 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTC
193075 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAA-CTTTGAATGCCTTGAAT
66 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAAT-AAGCTTTGAATGCCTTGAAT
* * *
193139 GTCTGAATTAAGAGTCCTACAATGGCTTGTCAGTTGGATGAAATTGAGAAGACTCTCCCTTGGTT
130 GTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTT
* * *
193204 CAAACTGACCCAAATCATCCTTGCATAAAATTCCCGTAACAAAATTCATGCATGCACTGTCTTCA
195 CAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCATGCACTGTCTTCA
*
193269 ATAAATCGATCATA-CTCAAGCTCCCGATATCATATTGGGGTGATTCAAAAGGCATTGGAAAGAT
260 ATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGAT
* * *
193333 AAGAGACAGAGAAATAATTCTCAACTGATTTCTGGAGCCAAACATGTATGTATCGCATCCAGAGA
325 AAGAGATAGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCCAGA-A
* * * * *
193398 -TTGATGACATTCTAACTAATATTCTTGAATCTGATGAAACCATTCAATGAACGTGACCCACTAG
389 TTTGAAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAG
*
193462 GTATATATGATAAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTG
454 GTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTG
* *
193527 AAGCCGATAAAGTTCTACAAGAGAACAAGTATGAAAACAAACTCTCAAAGATGTTTTATATATTC
519 AAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAAACTCTCAAAGATGTTTTATATATTC
*
193592 AAAATGTGTATATATAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAA
584 AAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAA
*
193657 ACG-CTCAACAA-ATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATG--TTGTCTT
649 A-GACTCAA-AAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTT
* * * *
193718 TCTTATATTCAAGGTTGGCTGAATATTATAGATCAATTTGGGGATGAATCTAGATAATTTGAAGC
712 TCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGC
*
193783 TTAATTTGGCCTTAATTTCGTCTAAGGGGTGGAAGA
777 TTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA
* * * *
193819 TTCTTGCTATTCCAAGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAAGCTC
1 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTC
* *
193884 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC-AATAATCTTTGAAGGCCTTGAATG
66 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATAAGCTTTGAATGCCTTGAATG
* * * * * * * *
193948 TGTGATTTAAGAGTCATTCAATGGCTTGTTACTTGGCTGTAGTTGA-AAAACGCTCCCTTGGTTC
131 TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTC
* *
194012 AAACTCATCCAAATCATCCATGCATAAAATT-CCGATAACAAAATTCCA-GCCTGCACTGTCTTA
196 AAACTCATCCAAATCATCCATGCATAAAATTCCCG-TAACAAAATT-CATGCATGCACTGTCTTC
* ** *
194075 AATAAATTGATCATATCTCAAGCTCCTTATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAAA
259 AATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGG--AAA
* * * * * * * *
194140 AAAAAGAGATAGATG-AATAATTCCCAATTGATTTCTGAAACCAAACATGTCTGTGTCACATCTA
322 GATAAGAGATAGA-GAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCCA
* * * *
194204 GAATCTGAAGACATTCTGACTAATATTCTTGCATCTGATTAAAATCGTTCAACGAACGTGACCCG
386 GAATTTGAAGACATTCTGACTAATATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCA
* * * ** * * *
194269 CTAGCTATATACGATGCGCTAGGAACCAACACAATAATAAAAGGAAATGAAGACTACAAGACTAC
450 CTAGGTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTAT
* * * *
194334 CTCGAAGCCGATAAGGTTGTACAAGAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATAT
515 CTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAAACTCTCAAAGATGTTTTATAT
* *
194399 ATTCAAAATGTGTATATACAGATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAGCATAT
580 ATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATAT
* * *
194464 GAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGCAATTGTATGCTTTGTC
645 GAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTC
* * *
194529 TTTCTTATGTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATTTGAA
710 TTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAA
* *
194594 GCTTAATTTGGCCTTAATTCCGTCAAAGGGGTGGAAGA
775 GCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA
* * *
194632 CTCTAGCTATTCCATGC-GAAAATTGTCTTGATAAGTGAATTAAATCACCGTTCATTGCATGCTC
1 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTC
* *
194696 CCTTGAAGAATATGAACAACCCTTGACTTTAGATTATAAC-AATCAGCTTTGAATGCCTTGAATG
66 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATAAGCTTTGAATGCCTTGAATG
** * * *** * *
194760 TGTGAATTAAGAGTCCTTTTATGGCTTCTAACTTTTCTGAAGTTGAAAAGAC-CTCCCTTGGTTC
131 TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTC
* * *
194824 AAA--C-T-----T-ATCCATGCATAAAATTCCCGTAAAAAAATTCCAT-CATGCACTCTTTTCA
196 AAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATT-CATGCATGCACTGTCTTCA
* * ** * *
194879 ATAAATCGATCATATCTCAAGCTCCCGCTATCGGATTAAGGTGATTCAAAAGGCGTTGAAAAGAT
260 ATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGAT
* * * * * * ***
194944 AAGAGATAGATGAAA-AATTCCCAATTGATTTGTTGATCCAAACATGTATGTATAGAATATTGAA
325 AAGAGATAGA-GAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCCAGAA
* * * * * * ** *
195008 TTTAAAGATATTCTGACTGATATTGTTTCATCGGATGAAATTGTTCAACGAACGTGACCCTCTAG
389 TTTGAAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAG
* * * ** *
195073 CTATATATGATGAGCTAGGAACCAATGCTATAATAAGATTAAATGAAGACTACAAAACTATCTTG
454 GTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTG
* * *
195138 AAGACGATAAAGTTCTACAA-AGAACAAGAATTAAAGCAACCTCTCAAAGATGTTTTATATATTC
519 AAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAAACTCTCAAAGATGTTTTATATATTC
* * *
195202 AAAATATGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAGCACATGAAA
584 AAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAA
* * * *
195267 AGACTCAAAAGTTGGAAAATTCTCCT-AATTTTAGCAATAAAATGCACTTGAATGCCTTT-TCGT
649 AGACTCAAAAGATGAAAAATTCTCATCAA-TTTAGCAATAAAATGCACTTGAATG-CTTTGTCTT
* * * ** *
195330 TCATATCTTCAAGGTTGTCTAAATATTCTAGATCATTTTGGAAATGAATCAAGACAATTTGAAGC
712 TCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGC
* * *
195395 ATAATTTGGCCTTAGTTTCGTCCAATGGGTGGAAGA
777 TTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA
** * * * *
195431 CAGTTGCTATTTCATGC-CAAAATTTGTCTTAATAAGTCAATTAAATCACCTTTTATTGCATGCT
1 CTCTTGCTATTCCATGCTGAAAA-TTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCT
*
195495 CCCTTGAAGAATATGAACAACCCTTGACTTTAGAAGATAACAAATAAGCTTTGAATGCCTTGAAT
65 CCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATAAGCTTTGAATGCCTTGAAT
* *
195560 GTCTGAATTAAGACTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTT
130 GTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTT
* * * * *
195625 CAAACTGATCCAAATCTTCCATGCGTAAAATTCACGTAACAAAATTCATGCGTGCACTGTCTTCA
195 CAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCATGCACTGTCTTCA
* * * *
195690 ATAAATCGATCCTATCTCAAGCCCCCGATATCGGATTGGGGTGATTCAAAAGGCATTCGAAAGAT
260 ATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGAT
* * * * *
195755 AAGAGATATAGAAATAATTCTTAATTGATTTCTGGAACCAAACATGTCTGTATCGTATCCAGAGT
325 AAGAGATAGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCCAGAAT
* * * * *
195820 TTGAAGACATTCAT-ACTAATATGCTTGCATCTAATGAATCCGTTCAAAGAACGTGACCCAATAG
390 TTGAAGACATTC-TGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAG
* * ** *
195884 GTATATATGATGAGCTAGGAACCAATGCTATAATAAAAGGAAATGAAGACTATAAGACTAAGTTC
454 GTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTG
* * * *
195949 AAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAATCAAACTTTCAAAGATGATTTATAAATTC
519 AAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAAACTCTCAAAGATGTTTTATATATTC
* * * *
196014 AATATGTGTATATACAAATGATCCGAAAGGTGCCTATTTATAGTATTTATAAGCAGCATATGGAA
584 AAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAA
* * * * * *
196079 AGGCTCAAAAGATGAAAAATTCCCATCAATTTACCAATAAAAAGAACTTGAATGCTTTGTCTTGC
649 AGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTC
* * *
196144 TTATGTTCAAGGTTGGCTTAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTT
714 TTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTT
*
196209 AATTTGGTCTTAATTTCGTCCAAGGGGTGGAAGA
779 AATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA
* * * * *
196243 CACTTGCTATTTCATGCTGAAATTTGTCTTAATAAGTGAATTAAATCACTTTTTATTGCATGCTC
1 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTC
* * * * *
196308 TCTTGAAGAATATGAACAACGCTTGACTTTAGATGATAACAAATCAGCTTCGAATGTCTTGAATG
66 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATAAGCTTTGAATGCCTTGAATG
* *
196373 TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATAAAATTGAGAAGAGTCTCCCTTGGTTC
131 TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTC
* *
196438 AAACTCATCCAAATCATCCATGCGTAAAATTCCCGTAACAAAATTCTTGCATGCACTGTCTTCAA
196 AAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCATGCACTGTCTTCAA
* * *
196503 TAAATCTATCATA-CTCAAGCTCTCAATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATA
261 TAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATA
* * * * **
196567 AGAGACAGAGAAATAATTCTCAACTGATTTCTGGAGCCAAACATGTATGTATCGCATACAGTGTT
326 AGAGATAGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCCAGAATT
* * * * *
196632 TGATGACATTCTAACTAATATTCTTGAATCTGATGAAATCGTTCAATG-ACGTGACCCACTAGGT
391 TGAAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGT
*
196696 ATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCCTGAA
456 ATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAA
* * **
196761 GCCGATAAAGTTATACAAGAGAACAAGTATGAAAATAAACTCTCAAAGATGTTTTATATATTCAA
521 GCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAAACTCTCAAAGATGTTTTATATATTCAA
*
196826 AATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGTATATGAAAAC
586 AATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAA-
* *
196891 G-CTCAACAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCT
650 GACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCT
* * ** *
196955 TATATTAAAGGTTGGCTGAATATTCTAGATCAAGTTGGGGATGAATCTAGATAATTTGAAGCTTA
715 TATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTA
* *
197020 ATTTGGCCTTAATTTCGACCAGGGGGTGGAAGA
780 ATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA
* * * * ** *
197053 TTCTTGCTATTCCACGCTGAAAATTATTTTAATAAGCAAATTAAATCACCCTTCATTGCATGCTC
1 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTC
* * *
197118 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC-AATAATCTTTGAAGGCCTTGAATT
66 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATAAGCTTTGAATGCCTTGAATG
* * * * * * *
197182 TGTGATTTAAGAGTCATTCAATGGCTTGTTACTTGGTTGTAGTTGA-AAAACTCTCCCTTGGTTC
131 TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTC
* * *
197246 AAACTCATCCAAATCATCCAAGCATAAAATTCCCATAACAAAATTC-TAGCATGCACTGTCTTAA
196 AAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCAT-GCATGCACTGTCTTCA
* * * *
197310 ATTAATCGATCATATCGCAAGCTCTCGATATCAGATTGAGGTGATTCAAAAGGCATTGG-AA-A-
260 ATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGAT
* * * * * ** *
197372 AA-A-ATAGATG-AATAATTCCCAATTGATTTATGAAACCAAACATGTTTATATCATATCTAGAA
325 AAGAGATAGA-GAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCCAGAA
* * * * *
197434 TCTGAAGACATTCTAACTGATATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGCTA
389 TTTGAAGACATTCTGACTAATATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCACTA
** * * * *
197499 GCCATATACGATGAGCTAGGAACCAATACTATAAAAAAAGGAAATGAAGACTACAAGACTACCTT
453 GGTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTT
* *
197564 GAAGCCGATAAAGTTCTAGAAGAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATT
518 GAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAAACTCTCAAAGATGTTTTATATATT
* * *
197629 TAAAATGTGTATATACAGATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAGCATATGAA
583 CAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAA
* * *
197694 AATACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGTATGCTTTGTCTTT
648 AAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTT
* * *
197759 CTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTCTGGGAACGAATCTAGACAATTTGAAGCT
713 CTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCT
* * * *
197824 TAATTTGTCCTTAATTTCGTGCAAGGGGAGGAACA
778 TAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA
* * *
197859 CTCTAGCTATTCCATGC-AAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTC
1 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTC
* * * *
197923 CATTGAAGAATATGAACAACCCTTGACTTTAGATTATAAC-AATCAGCTTTGAATGCCTTGAATA
66 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATAAGCTTTGAATGCCTTGAATG
* * * * * * * * *
197987 TGTGAATTACGAGTCCTTCTATGGCTTCTAACTTGGCTGAAGTTGAAAAGACACTCTCTTGGTTC
131 TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTC
* * * * *
198052 AAA--C-T-----T-ATCCATACATAAAATTCCCGTAAAAAAATTCCAT-CGTCCACTCTCTTCA
196 AAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATT-CATGCATGCACTGTCTTCA
* ** *
198107 ATAAATCGATCATATCTCAAGCTCCCGATATC-GAATTGAGGTGATTCAAAAGGTGTTGAAAAGA
260 ATAAATCGATCATATCTCAAGCTCCCGATATCAG-ATTGGGGTGATTCAAAAGGCATTGGAAAGA
* * * * *
198171 TAAGAGATAGATG-AATAATTCTCAATTGATTTCTTGAACCAAACATGTTTCTATAGCAT-AAGG
324 TAAGAGATAGA-GAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCCA-G
* * * * ** **
198234 AATTTGAAGATATTATGACTGATATTGTTGCATCTGATGAAATTGTTCAACGAACGTGACCCTGT
387 AATTTGAAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACT
* **
198299 AGCTATATATGATGAGCTAGGAACCAACT-CTATAACAAAATTAAATGAAGACTACAAGACTATC
452 AGGTATATATGATGAGCTAGGAACCAA-TGCTATAACAAAAGGAAATGAAGACTACAAGACTATC
* * * * * * * *
198363 TTGAAGACGATAAAGTTATTCAA-AGAATAAGAATTAAAGCAACCTCACAAAGATGTTATATATA
516 TTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAAACTCTCAAAGATGTTTTATATA
* * *
198427 TTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTTTAAGCAACATATG
581 TTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATG
* * *
198492 AAAAGACTCAAAAGATGGAAAATTCTCATCATTTTAGCAATAAAATGCACTTGAATGCTTTGTAT
646 AAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCT
* * * * *
198557 TTCATCTCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAG
711 TTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAG
* *
198622 CTTAATTTGGCCTTAATTTCGTCCTAGGGGTGGAATA
776 CTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA
* * * *
198659 TTGTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTC
1 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTC
* * * *
198724 CCTTGAAGAATATGAACAACCATTAACTTTAGATGATAACAAATAAGCTTTGAATGCTTTTAATG
66 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATAAGCTTTGAATGCCTTGAATG
* * *
198789 TCTGAATTAAGAGTCCTTCAATGGCTTATCACTTGGATGGAATTGAGAAGACTCTCCCTTGGTTC
131 TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTC
* * *
198854 AAACTGATCCAAATCATCCATGCGTAAAATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAA
196 AAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCATGCACTGTCTTCAA
* * * * * *
198919 TAAATCGATCCTATCCCAAGCCCCCGATATCGGATTGGGGTGATTCAAAAGGAATTCGAAAGATA
261 TAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATA
* * * * * * *
198984 AGAGATATAGAAATAATTCTTAATTGATTTTTGGAACCAAACATGTCTGTATCGTATCCATATTT
326 AGAGATAGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCCAGAATT
* *
199049 TGAAGACATTCAT-ACTAACATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCAATAGG
391 TGAAGACATTC-TGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGG
* * *
199113 TATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAACACTACAAGACTAACTTCA
455 TATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGA
* * *
199178 AACCGATAAAGTTCTACAAGAGAACAAGAATGAAATCAAACTCTCAAAGATGTTTTATAAATTCA
520 AGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAAACTCTCAAAGATGTTTTATATATTCA
* *** *
199243 ATATGTGTATATACAAATGATTTGAAAGGTGCCTATTTATAGTATTTATAAGCAGCATATGAAAA
585 AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAA
* * * *
199308 GGCTCAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAAT-CACTTAAATGCTTTATCTTTCT
650 GACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCT
* * *
199372 TATCTTCAAGGTTGGCTTAATTTTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTTA
715 TATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTA
* *
199437 ATTTAGTCTTAATTTCGTCCAAGGGGTGGAAGA
780 ATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA
* * * * * *
199470 CTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATAATCTTTTATTGCATGTTT
1 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTC
199535 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAA-CTTTGAATGCCTTGAAT
66 CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAAT-AAGCTTTGAATGCCTTGAAT
*
199599 GTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCT-CATTGGTT
130 GTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTT
* * * * * * * *
199663 CAAACTCATCCAGATCATCCAAGCGTAAAATTCCCGAAATAAAATTCATGCCTGCACTATTTTCA
195 CAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCATGCACTGTCTTCA
* * * * *
199728 ATAAATTGATCATA-CTTAAGCTCCCGATATCATATTAGGGTGTTTCAAAAGGCATTGGAAAGAT
260 ATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGAT
** * * * * *
199792 AAGAGACGGAGAAATAATTCTCAACTGATTTCTAGAGCCAAACATGTATGTATCACATCCAGAGT
325 AAGAGATAGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCCAGAAT
* * * * * *
199857 TTGATGACATTCTGACTAATATTCTTGAATCTGATGAAACCGTTCAATGAATGTGACCTAGTAGG
390 TTGAAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGG
* *
199922 TATATATGAGGAGATAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGA
455 TATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGA
* * * *
199987 ATCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAATTCTCTAAGATGTTTTATATATTCA
520 AGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAAACTCTCAAAGATGTTTTATATATTCA
200052 AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAA
585 AAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAA
* * *
200117 CG-CTCAACAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTTATCTTTC
650 -GACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTC
* *
200181 TTATCTTCAAGGTTTGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGATAATTT---G---
714 TTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTT
* *
200240 -A--T-G-CTTAATTTCGACCAAGGAGTGGAAGA
779 AATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA
* *
200269 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATATGAGAATTAAATCACCTTTCATTGCATGCTC
1 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTC
* * * *
200334 CCTTGAAGAATATAAACAATCCTTGACTTTAGAAT-ATAA-GAATAAGATTTGAATG-CTTGAAT
66 CCTTGAAGAATATGAACAACCCTTGACTTTAG-ATGATAACAAATAAGCTTTGAATGCCTTGAAT
* ** *
200396 GCGTGGTTTAAGAGTCCTTCAATGGGTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTT
130 GTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTT
200461 CAAACAT-ATCCAAATCAT
195 CAAAC-TCATCCAAATCAT
200479 ATCTCAAGCT
Statistics
Matches: 5829, Mismatches: 748, Indels: 177
0.86 0.11 0.03
Matches are distributed among these distances:
796 1 0.00
797 149 0.03
798 39 0.01
799 377 0.06
800 444 0.08
801 327 0.06
802 173 0.03
803 92 0.02
804 79 0.01
805 154 0.03
806 372 0.06
807 86 0.01
808 188 0.03
809 563 0.10
810 682 0.12
811 1205 0.21
812 775 0.13
813 123 0.02
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (812 bp):
CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTC
CCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATAAGCTTTGAATGCCTTGAATG
TGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTC
AAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCATGCACTGTCTTCAA
TAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATA
AGAGATAGAGAAATAATTCTCAATTGATTTCTGGAACCAAACATGTATGTATCGCATCCAGAATT
TGAAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGT
ATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAA
GCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAAACTCTCAAAGATGTTTTATATATTCAA
AATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAG
ACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTT
ATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAA
TTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA
Found at i:203550 original size:853 final size:857
Alignment explanation
Indices: 201900--203614 Score: 3321
Period size: 853 Copynumber: 2.0 Consensus size: 857
201890 ACTAATTTTT
201900 GTTTGTATTTGATTTATGACCAGGACAAATCCGGGCACATTAGTGGAGTACAACCCAGAGATCGA
1 GTTTGTATTTGATTTATGACCAGGACAAATCCGGGCACATTAGTGGAGTACAACCCAGAGATCGA
201965 AGCTGAAGCTAGGAGACTCCACGCACAGACACTTCGGGAAAGAAGGAGACAACAATTAGATCCAG
66 AGCTGAAGCTAGGAGACTCCACGCACAGACACTTCGGGAAAGAAGGAGACAACAATTAGATCCAG
202030 AAGAAAGATCAAATTCAGGTAATACAAATCTGATGGCCGAACCTACTATTCGGGAGTTAGCCGCG
131 AAGAAAGATCAAATTCAGGTAATACAAATCTGATGGCCGAACCTACTATTCGGGAGTTA--CGCG
202095 GCACCCACTGAACAAGGGGGCCTATGTGCATTAATTTTCCCCAAGGAGAAACTCCATACCAGTTG
194 GCACCCACTGAACAAGGGGGCCTATGTGCATTAATTTTCCCCAAGGAGAAACTCCATACCAGTTG
202160 AAAACTGGCCTTATTCATCTCCTCCCTACATTCTGCGGATTGCCAAACGAGGATCCACACAAACA
259 AAAACTGGCCTTATTCATCTCCTCCCTACATTCTGCGGATTGCCAAACGAGGATCCACACAAACA
202225 TCTCAAAGAATTTCACATGGTCTGCTTTAGCATGACACCACAGGGAGTAACCGAGGACCAAATAA
324 TCTCAAAGAATTTCACATGGTCTGCTTTAGCATGACACCACAGGGAGTAACCGAGGACCAAATAA
202290 AACTTAGAGCTTTCTCTTTTTCCTTAGCCGACTCGGCTAAGGAGTGGTTATTTTATCTTCCTCCT
389 AACTTAGAGCTTTCTCTTTTTCCTTAGCCGACTCGGCTAAGGAGTGGTTATTTTATCTTCCTCCT
202355 AATTCTGTTACTACATGGGCTAATATGACTCGCCTTTTTCTTGATAGGTTTTTCCCTGCAGCAAA
454 AATTCTGTTACTACATGGGCTAATATGACTCGCCTTTTTCTTGATAGGTTTTTCCCTGCAGCAAA
202420 AGTAAGTGAACTACGAAGGAGAATACTTGGAATCAAGCAACTTGATGGAGAGTCGCTCTACGACT
519 AGTAAGTGAACTACGAAGGAGAATACTTGGAATCAAGCAACTTGATGGAGAGTCGCTCTACGACT
*
202485 ATTGGGAGCGGCTTAAGAAGTTGTGTTCTAGTTGCCCACAACATGGTCTAACCGAACAAACACTC
584 ACTGGGAGCGGCTTAAGAAGTTGTGTTCTAGTTGCCCACAACATGGTCTAACCGAACAAACACTC
* *
202550 ATTCAATACTTCTATGAAGGATTATCTCCCCTGGAAATGAAGATGGTCGATGTTGCTAGCGGTGG
649 ATTCAATACTTCTATGAAGGATTATCTCCCCTGGAAATGAAGATGGTCGATGCTACTAGCGGTGG
202615 AGCCTTGGTGAATATGACTCCTACCGAGGCTAGAGACTTAATATCGACGATGGCTGCAAATTCCC
714 AGCCTTGGTGAATATGACTCCTACCGAGGCTAGAGACTTAATATCGACGATGGCTGCAAATTCCC
202680 AACAGTTCCGCGCAAATAATGAACCTTCTCGAAGGGTTCATGAGATAAGTTCATCTTCATTGGAA
779 AACAGTTCCGCGCAAATAATGAACCTTCTCGAAGGGTTCATGAGATAAGTTCATCTTCATTGGAA
202745 AGTAAAATAGATAA
844 AGTAAAATAGATAA
*
202759 GTTTGTATTTGATTTATGACCAGTACAAATCCGGGCACATTAGTGGAGTACAACCCAGAGATCGA
1 GTTTGTATTTGATTTATGACCAGGACAAATCCGGGCACATTAGTGGAGTACAACCCAGAGATCGA
202824 AGCTGAAGCTAGGAGACTCCACGCACAGACACTTCGGGAAAGAAGGAGACAACAATTAGATCCAG
66 AGCTGAAGCTAGGAGACTCCACGCACAGACACTTCGGGAAAGAAGGAGACAACAATTAGATCCAG
202889 AAGAAAGATCAAATTCAGGTAATACAAATCTGATGGCCGAACCTACTATTC-GG-GTTA-GCGGC
131 AAGAAAGATCAAATTCAGGTAATACAAATCTGATGGCCGAACCTACTATTCGGGAGTTACGCGGC
*
202951 ACCCACTGAACAA-GGGGCCTATGTGCATTCATTTTCCCCAAGGAGAAACTCCATACCAGTTGAA
196 ACCCACTGAACAAGGGGGCCTATGTGCATTAATTTTCCCCAAGGAGAAACTCCATACCAGTTGAA
203015 AACTGGCCTTATTCATCTCCTCCCTACATTCTGCGGATTGCCAAACGAGGATCCACACAAACATC
261 AACTGGCCTTATTCATCTCCTCCCTACATTCTGCGGATTGCCAAACGAGGATCCACACAAACATC
*
203080 TCAAAGAATTTCACATGGTCTGCTTTAGCATGACACCATAGGGAGTAACCGAGGACCAAATAAAA
326 TCAAAGAATTTCACATGGTCTGCTTTAGCATGACACCACAGGGAGTAACCGAGGACCAAATAAAA
203145 CTTAGAGCTTTCTCTTTTTCCTTAGCCGACTCGGCTAAGGAGTGGTTATTTTATCTTCCTCCTAA
391 CTTAGAGCTTTCTCTTTTTCCTTAGCCGACTCGGCTAAGGAGTGGTTATTTTATCTTCCTCCTAA
203210 TTCTGTTACTACATGGGCTAATATGACTCGCCTTTTTCTTGATAGGTTTTTCCCTGCAGCAAAAG
456 TTCTGTTACTACATGGGCTAATATGACTCGCCTTTTTCTTGATAGGTTTTTCCCTGCAGCAAAAG
203275 TAAGTGAACTACGAAGGAGAATACTTGGAATCAAGCAACTTGATGGAGAGTCGCTCTACGACTAC
521 TAAGTGAACTACGAAGGAGAATACTTGGAATCAAGCAACTTGATGGAGAGTCGCTCTACGACTAC
203340 TGGGAGCGGCTTAAGAAGTTGTGTTCTAGTTGCCCACAACATGGTCTAACCGAACAAACACTCAT
586 TGGGAGCGGCTTAAGAAGTTGTGTTCTAGTTGCCCACAACATGGTCTAACCGAACAAACACTCAT
203405 TCAATACTTCTATGAAGGATTATCTCCCCTGGAAATGAAGATGGTCGATGCTACTAGCGGTGGAG
651 TCAATACTTCTATGAAGGATTATCTCCCCTGGAAATGAAGATGGTCGATGCTACTAGCGGTGGAG
*
203470 CCTTGGTGAATATGACTCCTACCGAGGCTAGAGACTTAATATCGACGATGGCTGTAAATTCCCAA
716 CCTTGGTGAATATGACTCCTACCGAGGCTAGAGACTTAATATCGACGATGGCTGCAAATTCCCAA
203535 CAGTTCCGCGCAAATAATGAACCTTCTCGAAGGGTTCATGAGATAAGTTCATCTTCATTGGAAAG
781 CAGTTCCGCGCAAATAATGAACCTTCTCGAAGGGTTCATGAGATAAGTTCATCTTCATTGGAAAG
203600 TAAAATAGATAA
846 TAAAATAGATAA
203612 GTT
1 GTT
203615 AACTGAAGTC
Statistics
Matches: 849, Mismatches: 7, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
853 645 0.76
854 18 0.02
857 4 0.00
858 2 0.00
859 180 0.21
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (857 bp):
GTTTGTATTTGATTTATGACCAGGACAAATCCGGGCACATTAGTGGAGTACAACCCAGAGATCGA
AGCTGAAGCTAGGAGACTCCACGCACAGACACTTCGGGAAAGAAGGAGACAACAATTAGATCCAG
AAGAAAGATCAAATTCAGGTAATACAAATCTGATGGCCGAACCTACTATTCGGGAGTTACGCGGC
ACCCACTGAACAAGGGGGCCTATGTGCATTAATTTTCCCCAAGGAGAAACTCCATACCAGTTGAA
AACTGGCCTTATTCATCTCCTCCCTACATTCTGCGGATTGCCAAACGAGGATCCACACAAACATC
TCAAAGAATTTCACATGGTCTGCTTTAGCATGACACCACAGGGAGTAACCGAGGACCAAATAAAA
CTTAGAGCTTTCTCTTTTTCCTTAGCCGACTCGGCTAAGGAGTGGTTATTTTATCTTCCTCCTAA
TTCTGTTACTACATGGGCTAATATGACTCGCCTTTTTCTTGATAGGTTTTTCCCTGCAGCAAAAG
TAAGTGAACTACGAAGGAGAATACTTGGAATCAAGCAACTTGATGGAGAGTCGCTCTACGACTAC
TGGGAGCGGCTTAAGAAGTTGTGTTCTAGTTGCCCACAACATGGTCTAACCGAACAAACACTCAT
TCAATACTTCTATGAAGGATTATCTCCCCTGGAAATGAAGATGGTCGATGCTACTAGCGGTGGAG
CCTTGGTGAATATGACTCCTACCGAGGCTAGAGACTTAATATCGACGATGGCTGCAAATTCCCAA
CAGTTCCGCGCAAATAATGAACCTTCTCGAAGGGTTCATGAGATAAGTTCATCTTCATTGGAAAG
TAAAATAGATAA
Found at i:209737 original size:17 final size:19
Alignment explanation
Indices: 209715--209752 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
209705 TGTTCGAAAG
209715 AAAAAGA-A-AAAGAAAAA
1 AAAAAGACAGAAAGAAAAA
209732 AAAAAGACATGAAAGAAAAA
1 AAAAAGACA-GAAAGAAAAA
209752 A
1 A
209753 TGGAAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 1 0.06
20 10 0.56
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (19 bp):
AAAAAGACAGAAAGAAAAA
Found at i:213504 original size:808 final size:804
Alignment explanation
Indices: 211626--214918 Score: 4282
Period size: 808 Copynumber: 4.1 Consensus size: 804
211616 GTCAATATAC
* * * *
211626 ATGAATAATTCCCAATTGATTTC-TGAAACAAAACATGTCTAT-GTCATACCTAGAATCTGAAGA
1 ATGAATAATTCCAAATTGATTTCTTG-AACCAAACATGTGTATCG-CAT-CC-AGAATTTGAAGA
* *
211689 CATTCTGACTGATATTCTTGCATCTGAT--AACCGTTCAACGAATGTGACCCACTAGCTATATAT
62 CATTCTGACTGATATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTAGCTATATAT
*
211752 GATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGA-TTACAAGACTACCTTGAAGCCGA
127 GATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTTAC-AGACTATCTTGAAGCCGA
* *
211816 TAAAGTTCTACAAGAGAACAAGAATGAAAGCAACCTCTCAACGATGTTTTATATATATTCAAAAT
191 TAAAGTTCTACAAGAGAACAAGAATGAAAGCAACATCTCAAAGATG-TTT-TATATATTCAAAAT
* * ** *
211881 GTATATCTACAAATGATCCCAAATGTGCCTTTTTATAGTATTTCTA-AGCAGCATATGAAAAGAC
254 GTGTACCTACAAATGATCCCAAA-GTGCCTAATTATAGTATTTCTACA-AAGCATATGAAAAGAC
* * * * *
211945 TCAAAAGATGAAAAATTCTCC-TCAATTTACCAATAAAATGCACTAGAATGCTATATGTTTCTTA
317 TCAAAAGATGAAAAATTC-CCATAAATTTAGCAATAAAATGCACTTGAATGCTTTATCTTTCTTA
** * * *
212009 TCTTCACGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTACACAATTTGAAGCCT-AA
381 TCTTCAC-GTTGATTGAATATTCTAGATCGTTTTGGGTATGAATCTAGACAATTTGAAG-CTGAA
* * *
212073 TTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTCTATTCCATGCTGAAAATTGTATTAATAA
444 TTTGGCCTTAATTTCGTCCAAGGGGCGGAAGACT-GCTATTCCATGCTGAAAATTGTCTTAATAA
* * * *
212138 GTGAATTAAATCACCCGTCACTGCATGCTTCCTTGAAGAATATGAACAACCCTTGACTTTAGATG
508 GTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAATAACCCTTGACTTTAGATG
* ** * *
212203 ATAAC-AATC-ATTATTG-ATTACTTGAATGTGTGAATTAAGAGTCCATCAATGGCTTCTCACTT
573 ATAACAAATCAACT-TTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTT
* *
212265 GGCCGAAGTTGAAAAGACACTCCCTTGGTTC-AA---A--C---TCATCCATGCATAAAATTCCC
637 GGCTGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCC
212321 ATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGA
702 ATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGA
* * *
212386 TTGAGGTGATTCAAAAGGCATTGAAAACATAAGAGATAA
767 TTGAGGTGATTCAAAAGGAATTGAAAAGATAA-AGATAG
* *
212425 ATGAATAATTCCCAATTGATTTCTAT-AACCAATCATGTTTGTATCGCATCCAGAATTTGAAGAC
1 ATGAATAATTCCAAATTGATTTCT-TGAACCAAACATG--TGTATCGCATCCAGAATTTGAAGAC
* * *
212489 ATTCTTACTGATATTCTTGCATCTGATCAAACTGTTCAAAGAACGTGACCCACTAGCTATATATG
63 ATTCTGACTGATATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTAGCTATATATG
* * *
212554 ATGAGCTAGGAACCAACACTATAACAAAAAGAAGTGAAGACTTA-ACGACTATCTTGAAGCTGAT
128 ATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTTACA-GACTATCTTGAAGCCGAT
212618 AAAGTTCTACAAGAGAACAAGAATGAAAGCAACATCTCAAAGATGTTTTATATATTCAAAATGTG
192 AAAGTTCTACAAGAGAACAAGAATGAAAGCAACATCTCAAAGATGTTTTATATATTCAAAATGTG
* * *
212683 TACCTACAAATGATCCCAGAGATGCCTAATTATATTTTTTCTACAAAGCATATGAAAAGACTCAA
257 TACCTACAAATGATCCCAAAG-TGCCTAATTATAGTATTTCTACAAAGCATATGAAAAGACTCAA
212748 AAGATGAAAAATTCCCATAAATTTAGCAATAAAATGCACTTGAATGCTTTATCTTTCTTATCTTC
321 AAGATGAAAAATTCCCATAAATTTAGCAATAAAATGCACTTGAATGCTTTATCTTTCTTATCTTC
212813 AACGTTGATTGAATATTCTAGATCGTTTTGGGTATGAATCTAGACCAATTTGAAGCTGAATTTGG
386 -ACGTTGATTGAATATTCTAGATCGTTTTGGGTATGAATCTAGA-CAATTTGAAGCTGAATTTGG
*
212878 CCTTAATTTCGTCCAAGTGGCGGAAGACTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAAT
449 CCTTAATTTCGTCCAAGGGGCGGAAGACTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAAT
* *
212943 TAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATAAATAACCCTTAACTTTAGATGATAAC-
514 TAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAATAACCCTTGACTTTAGATGATAACA
* * * *
213007 AATCAACTTTGAATGCATTGAATGTGTGAATTAAGAGTCCTTAAATGTCTTGTCACTTGTCTGAA
579 AATCAACTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAA
* * *
213072 GTTGAAAGGACTCTCCCTTGGTTCAAAACT-ATCCAAGTCATCCATCCATAAAATTCCCATAACA
644 GTTGAAAAGACTCTCCCTTGGTTC-AAACTCATCCAAATCATCCATGCATAAAATTCCCATAACA
* * * * * * *
213136 AAATTCCAGCATGCCCTATCTTCAATAAATCGACCATTTCTCTAGCTCGCGATATCGGTTTGAGG
708 AAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGG
* *
213201 TGATTCAGAAGGAATTGAAAAGATAACTGATAG
773 TGATTCAAAAGGAATTGAAAAGATAA-AGATAG
* * *
213234 ATGAATAATTGCCAAATTGATTTCTTGAACCAAACATGTGTATCACTTCCAGAATTTGAAGATAT
1 ATGAATAATT-CCAAATTGATTTCTTGAACCAAACATGTGTATCGCATCCAGAATTTGAAGACAT
213299 TCTGACTGATATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTAGCTATATATGAT
65 TCTGACTGATATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTAGCTATATATGAT
*
213364 GTGCTAGGAACCAACACTATAACAAAAGGAAATGAAGAC-TACGAGACTATCTTGAAGCCGATAA
130 GAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTTAC-AGACTATCTTGAAGCCGATAA
* * *
213428 AGTTCTAAAAGAGTACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTA
194 AGTTCTACAAGAGAACAAGAATGAAAGCAACATCTCAAAGATGTTTTATATATTCAAAATGTGTA
** * * * * *
213493 TATATAAATGATCTCGAAGGTGTCTATTTATAGTATTTCTTAGC-AA-CATATGAAAAGACTCAA
259 CCTACAAATGATC-CCAAAGTGCCTAATTATAGTATTTC-TA-CAAAGCATATGAAAAGACTCAA
** * * *
213556 AAGATGAAAACATTATCATCAATTTAACAAAAAAATGCAGCTT-AA-----TA------TTA---
321 AAGATGAAAA-ATTCCCATAAATTTAGCAATAAAATGCA-CTTGAATGCTTTATCTTTCTTATCT
* * * *
213606 T-A----GA-T--A-ATT-T---T-G----GCG-ATGAATATAGAGAATTTGAAGCTTAATTTGG
384 TCACGTTGATTGAATATTCTAGATCGTTTTGGGTATGAATCTAGACAATTTGAAGCTGAATTTGG
* * * ** *
213652 TCTTAATTTCGTACAAGGGGTGGAAGACTCTTGCTATTTGATGCTGAAAATTGTCTTAATAACTG
449 CCTTAATTTCGTCCAAGGGGCGGAAGA--C-TGCTATTCCATGCTGAAAATTGTCTTAATAAGTG
* *
213717 AATTAAATCACCCTTCATTGCATGCTCCATTTAAGAATATGAATAACCCTTGA-TTTAGATGATA
511 AATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAATAACCCTTGACTTTAGATGATA
*
213781 ACAAATCAACTTTGAATGCCTTTAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCT
576 ACAAATCAACTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCT
* * * * *
213846 GAAGTTGAAAAGA--CTCCCTTAGTTCAAAGTCATCCAAATCATTCATGAATAAAATTCCCGTAA
641 GAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCATAA
* *
213909 CAAAATTCCAGCCTGCACTGTCGTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGA
706 CAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGA
* *
213974 AGTGATTCAAAAGGAATTGGAAAGATTAAAGATAG
771 GGTGATTCAAAAGGAATTGAAAAGA-TAAAGATAG
* * * * * *
214009 AGGAATAATT-CATAACTGATTTCTAGAACCAAACATATCTGTATGGCATCCAAAATTTGAAGAC
1 ATGAATAATTCCA-AATTGATTTCTTGAACCAAAC--ATGTGTATCGCATCCAGAATTTGAAGAC
* * * *
214073 ATTTTGACTGATCTTTTTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATAT
63 ATTCTGACTGAT-ATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTAGCTATATAT
* **
214138 GATGAGCTAGGAACCAACACTATAACAAAA-AAAAGTGAAGACTTTAC-GACTATCTTGAAGATG
127 GATGAGCTAGGAACCAACACTATAACAAAAGGAAA-TGAAGAC-TTACAGACTATCTTGAAGCCG
214201 ATAAAGTTCTACAAGAGAACAAGAATGAAAGCAACATCTCAAAGATGTTTTATATATTCAAAATG
190 ATAAAGTTCTACAAGAGAACAAGAATGAAAGCAACATCTCAAAGATGTTTTATATATTCAAAATG
* *
214266 TGTACCTACAAATGATCCCAAAGTTGCCTAATTATATTTTTTCTACAAAGCATATGAAAAGACTC
255 TGTACCTACAAATGATCCCAAAG-TGCCTAATTATAGTATTTCTACAAAGCATATGAAAAGACTC
214331 AAAAGATGAAAAATTCCCATAAATTTAGCAATAAAATGCACTTGAATGCTTTATCTTTCTTATCT
319 AAAAGATGAAAAATTCCCATAAATTTAGCAATAAAATGCACTTGAATGCTTTATCTTTCTTATCT
214396 TCAACGTTGATTGAATATTCTAGATCGTTTTGGGTATGAATCTAGACCAATTTGAAGCTGAATTT
384 TC-ACGTTGATTGAATATTCTAGATCGTTTTGGGTATGAATCTAGA-CAATTTGAAGCTGAATTT
*
214461 GGCCTTAATTTCGTCCAAGTGGCGGAAGACTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGA
447 GGCCTTAATTTCGTCCAAGGGGCGGAAGACTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGA
*
214526 ATTAAATCACCCTTCATTGCATGCTCCCTTAAAGAATATGAATAACCCTTGACTTTAGATGATAA
512 ATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAATAACCCTTGACTTTAGATGATAA
* *
214591 CAAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGTCTG
577 CAAATCAACTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTG
* * *
214656 AAGTTGAAAAGACTCTCCCTTTGTTCAAACTCATCCAAATCATGCATGCATAAAATTCCCGTAAC
642 AAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCATAAC
* * * * *
214721 AAAATTCCAGCTTGCACTGTCTTCAATAAATTGATC--AT-TCAAGCTCCTGATATTGGATTGAG
707 AAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAG
* *
214783 GTGATTCAAAAGGAATTGGAAAGATAAAAGATAC
772 GTGATTCAAAAGGAATTGAAAAGAT-AAAGATAG
* * * * * * *
214817 AGGAATAATT-CATAATTGATATATGGAACCAAACATATTTGTATCGCATCCAAAATTTGAGGAC
1 ATGAATAATTCCA-AATTGATTTCTTGAACCAAAC--ATGTGTATCGCATCCAGAATTTGAAGAC
** * *
214881 ATTCAAACTGATCTTTTTGCATCTGA-GAAACTGTTCAA
63 ATTCTGACTGATATTCTTGCATCTGATGAAACTGTTCAA
214919 ATTCTCTCTT
Statistics
Matches: 2191, Mismatches: 212, Indels: 175
0.85 0.08 0.07
Matches are distributed among these distances:
773 2 0.00
774 64 0.03
775 144 0.07
776 88 0.04
777 366 0.17
779 3 0.00
780 1 0.00
781 3 0.00
784 1 0.00
785 3 0.00
786 1 0.00
787 3 0.00
788 1 0.00
789 2 0.00
790 1 0.00
792 1 0.00
793 1 0.00
795 1 0.00
796 2 0.00
797 1 0.00
798 6 0.00
799 335 0.15
800 124 0.06
801 139 0.06
802 6 0.00
804 4 0.00
805 1 0.00
806 12 0.01
807 16 0.01
808 455 0.21
809 246 0.11
810 37 0.02
811 121 0.06
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (804 bp):
ATGAATAATTCCAAATTGATTTCTTGAACCAAACATGTGTATCGCATCCAGAATTTGAAGACATT
CTGACTGATATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTAGCTATATATGATG
AGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTTACAGACTATCTTGAAGCCGATAAAG
TTCTACAAGAGAACAAGAATGAAAGCAACATCTCAAAGATGTTTTATATATTCAAAATGTGTACC
TACAAATGATCCCAAAGTGCCTAATTATAGTATTTCTACAAAGCATATGAAAAGACTCAAAAGAT
GAAAAATTCCCATAAATTTAGCAATAAAATGCACTTGAATGCTTTATCTTTCTTATCTTCACGTT
GATTGAATATTCTAGATCGTTTTGGGTATGAATCTAGACAATTTGAAGCTGAATTTGGCCTTAAT
TTCGTCCAAGGGGCGGAAGACTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCA
CCCTTCATTGCATGCTCCCTTGAAGAATATGAATAACCCTTGACTTTAGATGATAACAAATCAAC
TTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAA
AGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCATAACAAAATTCCA
GCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAA
AAGGAATTGAAAAGATAAAGATAG
Found at i:215018 original size:17 final size:17
Alignment explanation
Indices: 214996--215150 Score: 102
Period size: 17 Copynumber: 9.1 Consensus size: 17
214986 AATTAAGAGT
*
214996 TAGTTTAATAAATGAAC
1 TAGTTTAATCAATGAAC
* *
215013 TAGTTTAGTTAATGAAC
1 TAGTTTAATCAATGAAC
* *
215030 TATCTTTATTCAATGAAC
1 TA-GTTTAATCAATGAAC
*
215048 T--TGTAATCTTGAATGAAC
1 TAGTTTAATC---AATGAAC
* * *
215066 TGGTTTGATGAATGAAC
1 TAGTTTAATCAATGAAC
* *
215083 TAGTTTGATAAATGAAC
1 TAGTTTAATCAATGAAC
* *
215100 TA-TTTGATGAAT-AAC
1 TAGTTTAATCAATGAAC
* *
215115 TAGTCTAATCAATGAAG
1 TAGTTTAATCAATGAAC
*
215132 AAGTTTAATCAATGAAC
1 TAGTTTAATCAATGAAC
215149 TA
1 TA
215151 CTTAGTTAAA
Statistics
Matches: 109, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
15 10 0.09
16 16 0.15
17 58 0.53
18 21 0.19
20 4 0.04
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (17 bp):
TAGTTTAATCAATGAAC
Found at i:215044 original size:18 final size:17
Alignment explanation
Indices: 215006--215048 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
214996 TAGTTTAATA
*
215006 AATGAACTAGTTTAGTT
1 AATGAACTACTTTAGTT
215023 AATGAACTATCTTTA-TT
1 AATGAACTA-CTTTAGTT
215040 CAATGAACT
1 -AATGAACT
215049 TGTAATCTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (17 bp):
AATGAACTACTTTAGTT
Found at i:215129 original size:32 final size:34
Alignment explanation
Indices: 215059--215130 Score: 94
Period size: 32 Copynumber: 2.2 Consensus size: 34
215049 TGTAATCTTG
* * *
215059 AATGAACTGGTTTGATGAATGAACTAGTTTGATA
1 AATGAACTGATTTGATGAATGAACTAGTCTAATA
*
215093 AATGAACT-ATTTGATGAAT-AACTAGTCTAATC
1 AATGAACTGATTTGATGAATGAACTAGTCTAATA
215125 AATGAA
1 AATGAA
215131 GAAGTTTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 16 0.47
33 10 0.29
34 8 0.24
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.33
Consensus pattern (34 bp):
AATGAACTGATTTGATGAATGAACTAGTCTAATA
Found at i:215912 original size:14 final size:14
Alignment explanation
Indices: 215893--215922 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
215883 TAACTGAAGG
*
215893 ATAAAATATATTGC
1 ATAAAATATAGTGC
215907 ATAAAATATAGTGC
1 ATAAAATATAGTGC
215921 AT
1 AT
215923 CGGTTCACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (14 bp):
ATAAAATATAGTGC
Found at i:216082 original size:13 final size:13
Alignment explanation
Indices: 216064--216088 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
216054 ACAATAATGG
216064 AAATATGTATATA
1 AAATATGTATATA
216077 AAATATGTATAT
1 AAATATGTATAT
216089 GAAGGTAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AAATATGTATATA
Found at i:217368 original size:17 final size:17
Alignment explanation
Indices: 217206--217365 Score: 189
Period size: 17 Copynumber: 9.4 Consensus size: 17
217196 CACAATTAAG
*
217206 TAGTTTGATAAATGAAC
1 TAGTTTGATGAATGAAC
217223 TAGTTTGATGAATGAAC
1 TAGTTTGATGAATGAAC
* *
217240 TAGTTTAATTAATGAAC
1 TAGTTTGATGAATGAAC
* *
217257 TAACTTT-ATTCAATGAAC
1 T-AGTTTGA-TGAATGAAC
* * **
217275 TTGTAATCTTGAATGAAC
1 TAGT-TTGATGAATGAAC
217293 TAGTTTGATG-ATGAAC
1 TAGTTTGATGAATGAAC
217309 TAGTTTGATGAATGAAC
1 TAGTTTGATGAATGAAC
217326 TAGTTTGATGAATGAAC
1 TAGTTTGATGAATGAAC
*
217343 TAGTTTAATGAATGAAC
1 TAGTTTGATGAATGAAC
217360 TAGTTT
1 TAGTTT
217366 AATTAAGAAC
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
16 16 0.13
17 82 0.67
18 25 0.20
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.38
Consensus pattern (17 bp):
TAGTTTGATGAATGAAC
Found at i:217390 original size:33 final size:33
Alignment explanation
Indices: 217284--217391 Score: 119
Period size: 33 Copynumber: 3.2 Consensus size: 33
217274 CTTGTAATCT
* * *
217284 TGAATGAACTAGTTTGATGATGAACTAGTTTGA
1 TGAATGAACTAGTTTGATGAAGAACTACTTAGA
*
217317 TGAATGAACTAGTTTGATGAATGAACTAGTTTA-A
1 TGAATGAACTAGTTTGATGAA-GAACTA-CTTAGA
* * *
217351 TGAATGAACTAGTTTAATTAAGAACTACTTAGT
1 TGAATGAACTAGTTTGATGAAGAACTACTTAGA
*
217384 TAAATGAA
1 TGAATGAA
217392 GTGCATAGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
32 3 0.05
33 33 0.52
34 26 0.41
35 2 0.03
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.35
Consensus pattern (33 bp):
TGAATGAACTAGTTTGATGAAGAACTACTTAGA
Found at i:218478 original size:27 final size:27
Alignment explanation
Indices: 218438--218489 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
218428 TCTAAGAAGC
* *
218438 ATATGAAAATACTCAATAGATGAAAGT
1 ATATGAAAAGACTCAAAAGATGAAAGT
218465 ATATGAAAAGACTCAAAAGATGAAA
1 ATATGAAAAGACTCAAAAGATGAAA
218490 ACATTCTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.56, C:0.08, G:0.15, T:0.21
Consensus pattern (27 bp):
ATATGAAAAGACTCAAAAGATGAAAGT
Found at i:221115 original size:17 final size:17
Alignment explanation
Indices: 221081--221124 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
221071 TTTAACTATG
* *
221081 TAGTTCATTGATTAAAC
1 TAGTTCATTCATCAAAC
*
221098 TAGTTCATTCATCGAAC
1 TAGTTCATTCATCAAAC
*
221115 TACTTCATTC
1 TAGTTCATTC
221125 TGGTATCAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (17 bp):
TAGTTCATTCATCAAAC
Found at i:221244 original size:17 final size:17
Alignment explanation
Indices: 221222--221300 Score: 122
Period size: 17 Copynumber: 4.6 Consensus size: 17
221212 TATAAAAAGT
*
221222 TGAATGAACTAGTTTGA
1 TGAATGAACTAGTTTAA
*
221239 TGAATGAAATAGTTTAA
1 TGAATGAACTAGTTTAA
*
221256 TGAATGAACTAGTTTTA
1 TGAATGAACTAGTTTAA
*
221273 TGAATGAAATAGTTTAA
1 TGAATGAACTAGTTTAA
221290 TGAATGAACTA
1 TGAATGAACTA
221301 CTTAATTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 55 1.00
ACGTcount: A:0.42, C:0.04, G:0.19, T:0.35
Consensus pattern (17 bp):
TGAATGAACTAGTTTAA
Found at i:221263 original size:34 final size:34
Alignment explanation
Indices: 221222--221300 Score: 149
Period size: 34 Copynumber: 2.3 Consensus size: 34
221212 TATAAAAAGT
221222 TGAATGAACTAGTTTGATGAATGAAATAGTTTAA
1 TGAATGAACTAGTTTGATGAATGAAATAGTTTAA
*
221256 TGAATGAACTAGTTTTATGAATGAAATAGTTTAA
1 TGAATGAACTAGTTTGATGAATGAAATAGTTTAA
221290 TGAATGAACTA
1 TGAATGAACTA
221301 CTTAATTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.42, C:0.04, G:0.19, T:0.35
Consensus pattern (34 bp):
TGAATGAACTAGTTTGATGAATGAAATAGTTTAA
Found at i:222382 original size:20 final size:20
Alignment explanation
Indices: 222346--222395 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
222336 AGATAAACTA
* *
222346 GTATCCATACCCAATGACTG
1 GTATCCATACACAATGAATG
222366 GTATCCATA-ACAGATGAATG
1 GTATCCATACACA-ATGAATG
*
222386 ATATCCATAC
1 GTATCCATAC
222396 TAGATAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (20 bp):
GTATCCATACACAATGAATG
Found at i:227540 original size:2 final size:2
Alignment explanation
Indices: 227535--227564 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
227525 TATATATATA
227535 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
227565 ATTTTTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:229057 original size:65 final size:65
Alignment explanation
Indices: 228987--229138 Score: 177
Period size: 65 Copynumber: 2.4 Consensus size: 65
228977 TTATGCCTTC
* *
228987 AAATACCTAAAAACAAGCTAAAACA-TCTTAAATCCTAATTAAAACACTTTAAAC-TATTTAAAC
1 AAATACCTAAAAACAAGATAAAACATTC-TAAATCCTAATTAAAACAC-TAAAACATATTTAAAC
229050 TA
64 TA
* * * *
229052 AAATACCTAAAAA-AATAATATAATATTCTAAATCCTAATTAAAATACTAAAACATATTTAAACT
1 AAATACCTAAAAACAA-GATAAAACATTCTAAATCCTAATTAAAACACTAAAACATATTTAAACT
229116 A
65 A
* *
229117 AAATATCT-TAAACAAGATAAAA
1 AAATACCTAAAAACAAGATAAAA
229139 TATAAAAATA
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
64 15 0.21
65 56 0.77
66 2 0.03
ACGTcount: A:0.56, C:0.14, G:0.01, T:0.28
Consensus pattern (65 bp):
AAATACCTAAAAACAAGATAAAACATTCTAAATCCTAATTAAAACACTAAAACATATTTAAACTA
Found at i:230879 original size:19 final size:19
Alignment explanation
Indices: 230846--230892 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
230836 CTATTCAGAG
*
230846 AAAAGTAAAAAAAAT-TACT
1 AAAA-TAAAAAAAATATAAT
*
230865 CAAAATAAAATAAATATAAT
1 -AAAATAAAAAAAATATAAT
230885 AAAATAAA
1 AAAATAAA
230893 GTTCATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AAAATAAAAAAAATATAAT
Found at i:230926 original size:11 final size:11
Alignment explanation
Indices: 230901--230946 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
230891 AAGTTCATTG
230901 AAAATAAAAC-
1 AAAATAAAACA
*
230911 GAAATAAAACA
1 AAAATAAAACA
*
230922 AAAATAAAATA
1 AAAATAAAACA
*
230933 AAAATATAACA
1 AAAATAAAACA
230944 AAA
1 AAA
230947 TTGGTTATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
10 9 0.30
11 21 0.70
ACGTcount: A:0.78, C:0.07, G:0.02, T:0.13
Consensus pattern (11 bp):
AAAATAAAACA
Done.