Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005741.1 Hibiscus syriacus cultivar Beakdansim tig00013428_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64110

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3228--3271
21
2.1
21
100
0
88
22
15
29
31
1.95
5007--5042
15
2.4
15
90
0
54
58
2
0
38
1.13
9205--9242
14
2.7
14
87
0
58
7
28
39
23
1.83
10068--10125
20
2.9
20
97
0
107
24
12
20
43
1.86
10035--10291
77
3.3
75
89
4
338
26
14
20
38
1.91
10240--10280
20
2.0
20
95
0
73
26
17
17
39
1.91
16437--16470
17
2.1
16
88
5
50
44
0
0
55
0.99
18074--18111
13
2.7
14
84
8
51
15
7
15
60
1.57
24850--24880
2
15.5
2
100
0
62
48
0
0
51
1.00
27423--27450
6
4.7
6
100
0
56
32
50
17
0
1.47
27938--27974
6
6.5
6
90
3
51
2
13
54
29
1.53
27971--28031
6
10.2
6
98
0
86
26
0
32
40
1.56
27943--27980
12
3.2
12
85
3
51
5
10
50
34
1.59
29493--29554
28
2.3
28
76
15
76
51
14
4
29
1.63
31893--31965
15
4.9
15
83
3
103
41
6
20
31
1.79
31893--31965
30
2.5
30
97
2
139
41
6
20
31
1.79
31948--31997
20
2.5
20
100
0
100
40
10
16
34
1.81
32166--32266
28
3.5
28
78
11
98
52
1
0
44
1.19
32277--32325
14
3.4
14
81
10
62
55
0
0
44
0.99
32262--32325
30
2.2
29
86
8
85
51
0
1
46
1.10
32278--32324
8
6.0
8
78
12
53
53
0
0
46
1.00
32290--32336
22
2.3
21
85
10
62
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32507--32625
42
2.9
41
94
2
211
45
19
18
16
1.86
49472--49546
35
2.1
35
85
4
98
44
20
0
36
1.52
49542--49654
35
3.2
35
85
0
136
36
0
21
41
1.59
60776--60848
22
3.1
22
79
16
67
46
2
0
50
1.15
60817--60853
19
2.1
19
90
10
60
40
0
0
59
0.97
61064--61115
22
2.3
24
80
9
65
53
0
1
44
1.11
61049--61108
30
1.9
32
86
6
88
50
1
3
45
1.28
62789--62839
23
2.2
23
89
0
75
41
1
0
56
1.10
62829--62871
15
2.8
15
85
3
50
39
2
2
55
1.25

Tables:   1

The End!