Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005743.1 Hibiscus syriacus cultivar Beakdansim tig00013430_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84841

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9051--9108
29
2.0
29
90
6
91
32
8
22
36
1.85
23216--23246
15
2.1
15
93
0
53
54
0
0
45
0.99
23259--23298
21
2.0
21
85
5
55
40
7
2
50
1.44
24727--24786
31
1.9
31
89
0
93
30
25
15
30
1.95
29614--29654
2
20.5
2
100
0
82
48
0
0
51
1.00
30658--30721
26
2.5
26
97
0
119
46
18
9
25
1.79
30720--30761
20
2.1
20
86
8
59
33
14
19
33
1.91
33170--33291
58
2.1
58
100
0
244
22
17
4
54
1.61
36675--36750
36
2.1
36
85
7
100
47
1
3
47
1.29
36896--36933
20
1.9
20
88
0
58
21
26
10
42
1.85
37141--37511
156
2.4
155
83
6
453
28
17
4
49
1.66
37135--37550
156
2.7
154
80
7
439
28
17
5
48
1.68
37734--38046
160
2.0
160
98
0
608
38
6
10
44
1.65
39288--39322
17
2.2
15
90
10
52
60
2
0
37
1.12
40745--40854
54
2.0
54
89
0
166
30
23
27
19
1.98
43647--43677
2
15.5
2
100
0
62
48
0
0
51
1.00
45802--45845
23
1.9
23
95
0
79
27
15
22
34
1.95
52955--53045
45
2.0
46
89
2
139
27
18
25
28
1.98
53065--53103
20
2.0
20
89
0
60
20
15
33
30
1.94
61664--61754
45
2.0
46
93
2
157
26
19
26
27
1.99
61774--61812
20
2.0
20
89
0
60
20
15
33
30
1.94
62786--62837
23
2.3
23
87
6
72
26
11
28
32
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76407--76458
20
2.6
20
96
0
95
34
17
26
21
1.95
77082--77191
21
5.0
21
72
6
78
23
16
25
34
1.95
77099--77193
23
4.3
22
74
11
88
25
16
24
33
1.96
83918--83970
23
2.3
23
86
0
70
22
16
26
33
1.96
84433--84471
19
2.1
19
90
0
60
30
0
12
56
1.37

Tables:   1

The End!