genome.fa.s5744.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005744.1 Hibiscus syriacus cultivar Beakdansim tig00013431_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102089

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3008--3052	23	2.0	23	86	0	63	28	22	26	22	1.99
3459--3484	2	13.0	2	100	0	52	50	0	0	50	1.00
5600--5650	24	2.1	24	96	0	93	35	27	17	19	1.94
9769--9810	21	2.0	21	85	0	57	26	23	16	33	1.96
10500--10534	18	1.9	18	88	0	52	20	20	31	28	1.97
14423--14463	21	2.0	21	85	9	57	29	17	0	53	1.44
14898--14932	18	1.9	18	94	0	61	34	34	8	22	1.85
16547--16586	13	2.9	15	82	17	50	42	2	12	42	1.56
22049--22101	18	3.0	18	88	2	72	33	7	30	28	1.85
22466--22925	222	2.1	223	91	3	739	40	17	12	28	1.87
32445--32497	25	2.1	25	86	6	72	11	13	11	64	1.51
32445--32497	24	2.2	25	86	3	72	11	13	11	64	1.51
34311--34367	2	29.0	2	96	3	107	49	0	0	50	1.00
34489--34526	19	2.0	19	89	0	58	65	2	5	26	1.27
37474--37560	23	3.7	23	76	14	88	26	26	26	20	1.99
43622--43708	23	3.7	23	76	14	88	26	26	26	20	1.99
48575--48629	22	2.4	23	78	6	67	50	0	1	47	1.11
57587--57626	14	2.9	14	88	3	64	60	27	10	2	1.42
57574--57603	10	3.0	10	95	0	51	60	23	10	6	1.52
57881--57916	14	2.6	14	95	0	63	58	16	11	13	1.63
59675--59708	18	1.9	18	88	5	52	29	0	5	64	1.17
61877--61921	13	3.5	13	81	0	54	15	2	13	68	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66889--66983	28	3.6	27	73	23	94	51	2	3	43	1.29
76433--76646	110	1.9	110	98	0	410	18	24	29	27	1.98
76927--76973	18	2.6	18	96	0	85	25	14	34	25	1.94
79552--79984	8	58.5	8	66	21	115	40	3	5	50	1.42
79594--79750	37	4.3	37	94	4	257	40	3	5	50	1.44
79552--79984	14	33.9	13	69	20	249	40	3	5	50	1.42
79594--79751	73	2.2	72	91	4	255	39	3	5	50	1.44
79702--79995	39	7.7	38	88	7	409	40	3	6	50	1.43
79666--79995	76	4.3	75	87	7	411	40	3	6	50	1.42
79643--79905	23	11.3	22	69	20	85	39	3	6	50	1.45
79724--79984	31	9.0	28	68	15	93	40	3	6	50	1.43
79723--80030	39	7.8	41	88	7	350	40	3	6	49	1.46
79744--79995	115	2.2	112	90	5	371	40	3	5	50	1.43
80484--80508	6	4.2	6	100	0	50	20	64	0	16	1.30
82175--82530	172	2.1	173	90	1	563	36	18	5	39	1.73
82993--83036	23	1.9	23	100	0	88	25	40	25	9	1.84
83066--83112	22	2.1	22	96	0	85	12	36	21	29	1.91
83070--83119	22	2.3	22	89	0	82	14	36	16	34	1.88
83141--83225	34	2.5	34	96	0	152	35	24	24	15	1.94
91086--91190	36	2.9	36	98	0	201	35	26	10	27	1.89
91285--91344	19	3.3	19	71	17	63	40	16	11	31	1.85
91280--91351	36	2.0	36	94	0	126	40	16	13	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92609--92684	31	2.5	30	76	6	80	43	5	6	44	1.52
92668--92714	21	2.2	22	85	11	62	46	0	8	44	1.33
94430--94503	8	8.3	9	74	15	50	45	1	9	43	1.44
94472--94504	2	16.5	2	100	0	66	51	0	0	48	1.00
95440--95532	18	4.9	18	79	7	87	23	21	27	26	1.99
99350--99403	23	2.5	23	85	8	78	31	18	24	25	1.97
100239--100283	19	2.4	19	85	14	74	42	4	22	31	1.73
100717--100787	18	3.8	18	82	14	90	21	19	30	28	1.97
101141--102089	4	242.5	4	88	9	1419	24	0	25	49	1.53

Tables:   1

The End!