genome.fa.s5745.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005745.1 Hibiscus syriacus cultivar Beakdansim tig00013434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  208064

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5885--5934	24	2.1	24	84	0	64	34	16	12	38	1.85
16883--16919	18	2.0	19	89	5	58	2	18	0	78	0.87
21833--21862	13	2.4	13	94	5	53	43	0	30	26	1.55
31648--31709	13	4.9	13	72	18	51	32	37	1	29	1.67
31650--31729	35	2.2	37	91	4	128	33	37	1	27	1.65
31650--31729	11	6.7	11	74	23	65	33	37	1	27	1.65
31650--31729	24	3.4	22	76	22	65	33	37	1	27	1.65
34767--34828	13	4.9	13	72	18	51	32	37	1	29	1.67
34769--34848	35	2.2	37	91	4	128	33	37	1	27	1.65
34769--34848	11	6.7	11	74	23	65	33	37	1	27	1.65
34769--34848	24	3.4	22	76	22	65	33	37	1	27	1.65
47083--47137	24	2.3	25	81	6	60	32	16	21	29	1.95
51981--52023	20	2.2	20	91	4	70	32	9	9	48	1.67
52436--52486	19	2.6	20	80	20	63	23	9	0	66	1.21
52947--52997	19	2.6	20	87	3	68	45	5	13	35	1.68
56486--56570	11	7.2	11	74	22	75	32	36	2	28	1.70
56484--56587	36	2.9	36	94	1	174	31	36	2	28	1.72
58212--58250	14	2.8	14	100	0	78	0	23	0	76	0.78
58215--58263	16	3.2	16	85	5	57	0	20	0	79	0.73
67419--67458	11	3.6	11	96	0	71	75	15	10	0	1.05
67401--67458	22	2.8	21	82	12	66	79	12	8	0	0.94
67419--67465	20	2.2	22	88	7	71	72	17	10	0	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75569--81008	808	6.7	808	94	0	9565	26	17	16	39	1.90
87207--87236	13	2.4	13	94	5	53	26	30	0	43	1.55
96450--96500	19	2.6	20	93	3	86	43	5	13	37	1.69
97608--97647	21	1.9	21	84	0	53	35	22	7	35	1.82
105445--105503	19	3.0	19	85	5	73	42	11	10	35	1.76
108839--108869	16	1.9	16	100	0	62	35	6	25	32	1.82
112347--112379	16	2.1	16	94	0	57	39	6	21	33	1.78
113192--113246	23	2.3	23	80	17	60	41	5	12	40	1.66
119897--119948	20	2.6	20	93	0	86	36	15	5	42	1.71
120284--120345	13	4.9	13	72	18	51	32	37	1	29	1.67
120286--120365	35	2.2	37	88	4	119	32	37	2	27	1.70
120807--120853	14	3.1	15	75	12	51	72	6	19	2	1.17
123899--123950	24	2.2	24	92	0	86	7	13	19	59	1.58
124676--124715	21	1.9	21	85	10	55	62	0	17	20	1.33
124738--124778	22	1.9	21	90	5	64	26	2	36	34	1.70
127136--127185	22	2.2	23	89	3	75	36	36	4	24	1.74
131617--131677	11	6.2	9	78	17	52	3	13	4	78	1.03
131633--131659	11	2.5	11	100	0	54	7	7	7	77	1.12
131991--132031	22	1.9	21	90	5	64	26	2	36	34	1.70
133881--133922	19	2.2	19	95	0	75	14	19	28	38	1.90
145359--145403	8	5.5	8	84	12	56	2	20	2	75	1.01
145355--145403	25	2.0	25	88	8	73	2	20	2	75	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145352--145404	16	3.3	15	84	12	61	1	18	1	77	0.96
148538--148579	21	2.0	21	100	0	84	28	23	14	33	1.94
149226--149289	13	5.4	11	73	23	58	32	35	3	28	1.73
149203--149306	36	2.9	36	94	1	174	31	36	3	27	1.75
149448--149491	15	2.9	15	96	0	79	20	27	0	52	1.47
154386--154412	10	2.7	10	100	0	54	92	7	0	0	0.38
159869--159910	21	2.0	21	95	0	75	28	21	14	35	1.92
160552--160615	13	5.4	11	73	23	58	32	35	3	28	1.73
160529--160632	36	2.9	36	94	1	174	31	36	3	27	1.75
170717--170755	6	6.5	6	82	11	53	2	17	0	79	0.84
170717--170761	13	3.6	13	85	8	51	2	20	0	77	0.87
170971--171013	15	2.9	15	85	0	59	53	0	23	23	1.46
175029--175086	24	2.5	23	78	13	57	34	18	17	29	1.94
190500--190532	16	2.1	16	94	0	57	39	6	21	33	1.78
191334--191388	23	2.3	23	80	17	60	41	5	12	40	1.66
198404--198465	13	4.9	13	72	18	51	32	37	1	29	1.67
198406--198485	35	2.2	37	91	4	128	33	37	1	27	1.65
198406--198485	11	6.7	11	74	23	65	33	37	1	27	1.65
198406--198485	24	3.4	22	76	22	65	33	37	1	27	1.65

Tables:   1

The End!