genome.fa.s575.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000575.1 Hibiscus syriacus cultivar Beakdansim tig00001127_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111029

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5494--5523	2	15.0	2	100	0	60	50	0	0	50	1.00
10870--10954	29	3.0	29	91	1	127	47	4	14	34	1.65
10884--10954	14	4.9	15	77	6	83	47	5	14	32	1.67
10889--10938	15	3.4	15	83	5	75	44	4	14	38	1.63
10943--11026	34	2.5	34	98	0	159	39	10	14	35	1.81
11312--11416	31	3.4	30	77	7	86	43	2	0	52	1.22
11351--11418	19	3.6	19	75	11	68	47	1	1	50	1.19
11528--11612	11	8.2	11	69	21	51	48	0	2	49	1.14
11533--11589	23	2.4	23	82	11	71	49	0	0	50	1.00
12290--12338	24	2.0	25	88	4	73	48	2	0	48	1.12
12379--12437	21	2.9	21	73	21	63	59	0	0	40	0.97
12377--12455	30	2.5	31	82	14	90	56	0	1	41	1.07
12368--12453	25	3.4	24	77	18	70	55	1	1	41	1.14
12338--12440	11	9.5	11	70	18	58	54	0	0	44	1.06
12382--12507	41	3.1	40	76	12	107	51	0	2	46	1.14
12546--12585	21	2.1	19	86	13	55	47	5	0	47	1.24
12540--12595	23	2.4	24	82	11	64	50	3	0	46	1.19
12725--12785	22	2.7	23	76	14	63	49	0	1	49	1.10
21439--21477	13	2.7	15	76	15	55	41	2	5	51	1.38
25981--26224	41	5.9	41	96	0	434	22	24	23	29	1.99
26167--26234	21	3.4	19	67	15	55	25	23	22	29	1.99
27081--27148	19	3.4	19	69	15	64	30	22	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27088--27384	41	7.2	42	94	1	494	30	25	22	21	1.99
31664--31708	18	2.5	18	88	0	63	22	24	31	22	1.99
31640--31708	36	1.9	36	84	0	93	21	21	28	27	1.99
35217--35258	21	2.0	21	95	0	75	30	14	7	47	1.71
35253--35351	33	3.0	33	95	1	173	30	7	17	45	1.75
36114--36167	2	27.0	2	100	0	108	50	0	0	50	1.00
36646--36679	10	3.3	10	84	8	50	44	8	8	38	1.67
38018--38115	18	5.4	18	91	0	142	17	22	31	28	1.96
38988--39328	4	86.5	4	95	4	622	49	24	0	25	1.50
39694--39766	18	3.9	18	78	7	74	30	30	19	20	1.97
39711--39789	20	4.1	19	77	12	81	26	29	22	21	1.99
39692--39786	38	2.5	38	81	6	129	27	28	20	24	1.99
40746--40782	2	18.5	2	100	0	74	48	0	0	51	1.00
42309--42673	76	4.9	76	77	14	379	30	14	10	44	1.79
42515--42643	64	2.0	64	92	0	213	27	16	10	45	1.80
42591--42897	99	3.1	99	87	5	442	31	12	12	43	1.79
43100--43335	72	3.4	71	76	11	220	31	10	10	47	1.72
50781--50813	16	2.1	16	100	0	66	57	24	12	6	1.57
50882--50931	16	3.1	16	94	0	91	56	24	12	8	1.62
51954--52015	24	2.6	24	92	0	88	54	20	12	11	1.68
51967--52014	10	4.4	10	78	19	51	54	25	12	8	1.65
51974--52015	14	3.3	14	75	25	56	52	26	14	7	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56970--57007	2	19.0	2	94	0	67	50	2	0	47	1.15
57473--57610	21	6.7	21	71	6	77	37	24	17	20	1.93
57577--57806	20	11.5	20	81	5	232	36	24	18	19	1.94
58468--58522	24	2.3	24	83	0	65	25	12	21	40	1.89
58489--58535	24	2.0	24	86	0	67	25	12	21	40	1.89
58710--58734	12	2.1	12	100	0	50	72	0	28	0	0.86
60979--61066	33	2.7	33	92	3	142	7	18	27	46	1.76
60979--61103	19	7.1	19	74	18	117	8	16	28	46	1.77
61151--61543	93	4.1	93	78	13	468	46	18	12	22	1.83
61284--61323	17	2.4	17	100	0	80	45	15	17	22	1.85
61191--61416	110	2.1	110	100	0	452	46	18	13	21	1.84
63250--63306	14	3.7	14	75	20	60	42	24	24	8	1.83
63242--63325	33	2.5	33	96	0	159	45	21	23	9	1.81
63264--63347	19	4.7	19	81	14	106	44	22	22	10	1.84
63359--63415	14	3.7	14	75	20	60	8	24	22	43	1.81
63343--63423	33	2.5	33	95	0	144	8	22	22	46	1.78
63400--63475	21	3.7	21	83	3	109	11	25	17	46	1.82
63399--63476	41	1.9	41	97	0	147	12	25	16	44	1.83
63555--63625	33	2.2	33	92	0	115	47	18	22	11	1.80
63807--63861	22	2.5	22	84	0	83	20	14	40	25	1.90
64008--64201	20	9.6	20	79	5	194	19	18	25	36	1.94
64010--64181	60	2.8	60	81	0	218	20	18	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64188--64270	21	4.0	21	70	6	69	26	16	22	33	1.96
65524--65562	19	2.1	18	85	4	51	48	7	5	38	1.54
74417--74475	29	2.1	27	84	6	73	42	10	5	42	1.60
82682--82709	2	14.0	2	100	0	56	50	0	0	50	1.00
82772--82863	41	2.2	41	84	3	114	20	8	15	55	1.66
83480--83513	15	2.2	16	89	5	52	52	0	0	47	1.00
88879--88906	3	9.3	3	100	0	56	0	0	67	32	0.91
89010--89062	21	2.5	21	87	6	72	26	0	37	35	1.57
89023--89063	21	2.0	21	100	0	82	26	0	34	39	1.57
93626--93663	20	1.9	19	89	5	58	52	7	0	39	1.31
96011--96049	17	2.3	18	82	13	55	43	7	0	48	1.31
96786--96816	2	15.5	2	100	0	62	48	0	0	51	1.00
97780--97815	14	2.6	14	90	0	54	36	2	5	55	1.38
97901--97982	22	3.7	21	76	9	74	48	1	0	50	1.08
97896--97983	20	3.9	22	78	13	90	48	1	0	50	1.08
97948--98037	31	2.8	32	78	20	84	47	0	3	48	1.18
97923--98046	31	4.2	29	71	24	73	48	0	2	49	1.14
98076--98119	22	2.0	22	86	0	61	47	0	0	52	1.00
98139--98194	27	2.1	27	80	12	62	48	1	1	48	1.22
98300--98345	22	2.1	22	88	8	67	54	0	0	45	0.99
98273--98351	30	2.5	33	83	10	101	50	0	1	48	1.08
98241--98355	55	2.2	52	81	12	135	49	0	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98370--98412	11	3.8	11	75	6	50	39	0	4	55	1.20
105034--105069	2	18.0	2	100	0	72	50	0	0	50	1.00
107126--107153	12	2.3	12	100	0	56	17	60	7	14	1.55

Tables:   1

The End!