genome.fa.s5750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005750.1 Hibiscus syriacus cultivar Beakdansim tig00013449_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148084

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4294--4505	55	3.9	55	91	0	334	36	20	17	25	1.94
10372--10610	55	4.4	54	88	2	343	35	18	18	27	1.95
11797--11836	17	2.4	17	100	0	80	37	5	37	20	1.74
26004--26070	26	2.6	26	80	4	73	28	17	17	35	1.93
26026--26068	13	3.3	13	87	6	61	27	18	13	39	1.89
26980--27035	19	2.9	19	97	0	103	33	16	25	25	1.95
28661--28751	23	4.0	23	80	0	110	19	25	25	29	1.99
32190--32226	19	1.9	19	100	0	74	32	16	27	24	1.96
33857--33940	23	3.7	23	81	0	114	16	25	26	32	1.96
37943--38014	29	2.5	29	86	0	90	38	18	5	37	1.74
37952--38113	29	5.7	29	71	5	114	40	24	6	29	1.79
37977--38113	57	2.4	57	77	0	148	41	24	6	27	1.79
38121--38186	13	4.8	13	81	17	80	16	21	45	16	1.85
38140--38178	17	2.3	17	100	0	78	10	23	48	17	1.78
45223--45365	29	4.9	28	73	10	108	40	22	4	32	1.75
45395--45469	29	2.8	26	78	20	91	17	22	44	16	1.87
45415--45447	12	2.8	12	100	0	66	12	24	45	18	1.83
45402--45457	17	3.5	17	75	25	68	14	23	46	16	1.83
45472--45526	10	5.6	10	81	10	69	36	29	20	14	1.92
45472--45526	19	2.8	20	84	10	69	36	29	20	14	1.92
50853--50882	8	3.6	8	91	8	51	46	0	0	53	1.00
52754--52842	40	2.3	39	88	2	124	37	24	16	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57474--57563	40	2.3	39	84	1	117	36	23	16	23	1.94
69576--69770	81	2.5	81	82	9	249	64	9	16	10	1.49
72939--72970	2	16.0	2	100	0	64	50	0	0	50	1.00
73122--73160	20	2.0	20	89	0	60	15	7	7	69	1.35
73358--73400	12	3.6	12	77	0	50	16	20	44	18	1.87
73398--73476	36	2.3	35	91	4	124	49	0	0	50	1.00
79170--79342	90	1.9	89	94	1	301	38	10	6	43	1.66
85292--85366	9	7.7	10	75	11	59	29	25	25	20	1.99
85292--85365	29	2.5	29	86	6	96	29	25	25	18	1.98
92531--92561	7	4.4	7	91	0	53	29	29	25	16	1.96
92551--92599	22	2.2	22	96	0	89	12	22	46	18	1.82
92603--92731	19	6.7	19	76	13	122	27	29	27	15	1.96
92611--92731	10	12.7	9	79	11	116	28	29	27	14	1.96
92603--92731	29	4.5	28	83	10	138	27	29	27	15	1.96
92607--92732	39	3.3	39	92	6	206	27	29	26	15	1.96
94663--94761	43	2.3	43	85	1	137	20	18	22	39	1.92
94686--94785	43	2.3	43	84	0	119	24	19	20	37	1.94
96646--96801	65	2.4	65	91	1	242	28	22	19	29	1.98
106948--107297	194	1.8	193	86	3	515	38	12	10	39	1.77
108946--109101	65	2.4	65	88	1	215	28	20	19	30	1.97
111218--111267	20	2.5	20	80	0	55	52	10	16	22	1.73
111257--111412	52	3.2	50	72	20	170	48	9	11	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111210--111461	92	2.7	90	90	4	364	47	10	13	29	1.75
111290--111453	40	3.8	40	75	17	166	48	11	11	28	1.74
111290--111354	20	3.2	20	71	0	58	50	10	12	26	1.72
111303--111361	20	3.0	20	71	0	64	49	13	8	28	1.71
111374--111463	20	4.5	20	75	0	81	50	11	12	26	1.73
122544--122646	44	2.3	44	88	1	152	37	6	11	43	1.68
128783--128815	4	8.0	4	93	6	57	27	0	0	72	0.85
133664--133708	22	2.0	22	86	0	63	31	20	20	28	1.97

Tables:   1

The End!