genome.fa.s5751.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005751.1 Hibiscus syriacus cultivar Beakdansim tig00013454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121156

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
782--810	14	2.1	14	100	0	58	79	0	20	0	0.74
781--890	13	8.5	12	70	24	64	78	1	13	6	1.03
781--897	6	19.2	6	72	17	55	78	1	13	5	1.01
837--884	18	2.6	18	81	18	62	81	4	10	4	0.97
837--897	13	4.5	13	71	6	50	81	3	11	3	0.92
1912--2402	131	3.8	133	81	7	535	35	15	19	29	1.93
2596--2650	22	2.5	22	90	0	83	40	45	5	9	1.59
2641--2679	18	2.2	18	90	4	62	56	33	0	10	1.33
7656--7965	45	6.9	45	87	1	397	40	10	20	28	1.86
7658--8003	90	3.8	90	78	9	332	39	10	20	29	1.86
13927--14139	96	2.2	94	84	4	259	33	15	23	27	1.94
14068--14138	22	3.5	20	78	10	74	35	12	25	26	1.92
14590--14894	45	6.8	45	83	1	324	40	10	20	28	1.85
23692--23731	22	1.9	22	85	10	57	40	17	15	27	1.89
24627--24684	9	6.1	9	75	18	55	81	1	13	3	0.91
24634--24664	11	2.7	11	95	5	53	90	0	9	0	0.46
25628--26205	135	4.3	135	79	3	581	35	15	19	29	1.92
25628--26205	270	2.1	270	81	2	669	35	15	19	29	1.92
26353--26408	18	3.1	18	100	0	112	50	39	0	10	1.37
27398--27600	107	1.9	109	81	6	252	16	15	16	51	1.76
30223--30267	23	2.0	23	100	0	90	26	8	22	42	1.83
30871--30919	3	16.3	3	100	0	98	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34826--34864	15	2.7	15	88	4	53	20	15	12	51	1.76
37753--37810	2	29.0	2	100	0	116	50	0	0	50	1.00
38097--38141	23	2.0	23	95	0	81	66	13	15	4	1.39
38135--38207	7	10.0	7	71	19	51	80	1	16	1	0.85
38131--38200	17	4.1	16	79	16	77	80	1	17	1	0.87
40456--40820	94	4.0	94	84	8	513	28	15	22	33	1.94
40456--40777	177	1.8	177	98	0	626	26	15	22	35	1.94
41670--41714	24	1.9	23	82	13	56	51	6	24	17	1.70
41504--42188	113	6.0	114	89	3	828	37	14	17	30	1.90
42418--42459	3	14.0	3	89	0	57	40	0	0	59	0.97
42420--42459	15	2.7	15	96	0	71	42	0	0	57	0.98
51114--51182	30	2.2	30	82	15	86	36	5	17	40	1.74
51123--51182	29	2.0	31	90	6	97	35	6	16	41	1.75
51391--51430	20	1.9	21	85	10	55	37	37	10	15	1.80
53575--53649	37	2.0	37	100	0	150	53	5	22	18	1.65
58641--58685	19	2.3	19	84	7	54	6	2	33	57	1.37
58890--58982	19	5.0	19	75	15	95	19	27	18	34	1.95
58890--58941	18	2.8	18	91	8	79	17	32	21	28	1.96
58890--58982	37	2.5	38	81	10	111	19	27	18	34	1.95
62478--62644	39	4.3	39	78	5	171	43	12	6	37	1.69
62478--62636	77	2.1	77	86	4	223	42	13	5	38	1.68
62684--62974	58	5.0	58	78	7	252	42	12	7	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63104--63246	45	3.2	44	83	7	180	41	16	9	32	1.79
63455--63480	13	2.0	13	100	0	52	53	7	7	30	1.57
66279--66331	23	2.6	19	76	21	61	45	1	5	47	1.37
66286--66329	23	1.9	23	100	0	88	43	0	6	50	1.29
70772--71215	220	2.0	221	91	1	710	30	14	15	40	1.86
76879--76931	26	2.1	26	82	3	63	30	11	26	32	1.91
80483--80979	256	1.9	258	84	4	671	35	16	16	32	1.91
92002--92043	22	1.9	22	85	0	57	33	4	9	52	1.55
92037--92151	51	2.3	51	87	0	158	33	3	12	50	1.57
96805--96859	22	2.5	22	97	2	103	43	18	0	38	1.50
100157--100204	21	2.2	22	85	10	64	20	6	10	62	1.49
102718--102766	22	2.2	22	89	7	73	20	46	24	8	1.77
102780--102820	7	5.9	7	88	0	64	26	29	14	29	1.95
102825--102899	29	2.6	29	87	6	107	32	5	20	42	1.74
104205--104243	19	2.1	19	86	13	55	30	5	5	58	1.41
116624--116660	18	2.1	18	100	0	74	16	37	10	35	1.83

Tables:   1

The End!