Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005753.1 Hibiscus syriacus cultivar Beakdansim tig00013460_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 171241
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Found at i:6194 original size:20 final size:20
Alignment explanation
Indices: 6165--6203 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6155 TTTCCACCAC
6165 ATGCAACTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
* *
6185 ATGCATCTATTTGATCCTA
1 ATGCAACTATATGATCCTA
6204 TATGAGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:7560 original size:55 final size:56
Alignment explanation
Indices: 7499--7608 Score: 177
Period size: 56 Copynumber: 2.0 Consensus size: 56
7489 ACTTAGACGA
* *
7499 ATAGGAACAAAAAATAATTGG-CAATATCACATAGAAGATAATTATATATACACGC
1 ATAGGAACAAAAAATAATTGGTAAATATCAAATAGAAGATAATTATATATACACGC
* *
7554 ATAGGAACAAAAAATAATTGGTAAATATCAAATAGAATATAATTATATATGCACG
1 ATAGGAACAAAAAATAATTGGTAAATATCAAATAGAAGATAATTATATATACACG
7609 AATACTTTCT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
55 21 0.42
56 29 0.58
ACGTcount: A:0.52, C:0.10, G:0.13, T:0.25
Consensus pattern (56 bp):
ATAGGAACAAAAAATAATTGGTAAATATCAAATAGAAGATAATTATATATACACGC
Found at i:9158 original size:21 final size:21
Alignment explanation
Indices: 9134--9179 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
9124 AAATCCTTAC
9134 TTTTATTGAATAAAAATAATA
1 TTTTATTGAATAAAAATAATA
* * * *
9155 TTTTTTTTAATAAATATATTA
1 TTTTATTGAATAAAAATAATA
9176 TTTT
1 TTTT
9180 GGGTTGGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TTTTATTGAATAAAAATAATA
Found at i:12816 original size:21 final size:21
Alignment explanation
Indices: 12790--12843 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
12780 ATACTCATAG
12790 GGGTATCGATACTTGACCCCA
1 GGGTATCGATACTTGACCCCA
12811 GGGTATCGATACTTGACCCCA
1 GGGTATCGATACTTGACCCCA
12832 GGGTATCGATAC
1 GGGTATCGATAC
12844 GACTCACTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (21 bp):
GGGTATCGATACTTGACCCCA
Found at i:15647 original size:43 final size:43
Alignment explanation
Indices: 15581--15671 Score: 137
Period size: 43 Copynumber: 2.1 Consensus size: 43
15571 AGTAATATGT
* * *
15581 CTAATTCTATTTTGGAGCAATTACCATCTTTCCAACTTATTTC
1 CTAATACTATGTTGGAGCAATTACCAGCTTTCCAACTTATTTC
* *
15624 CTAATACTATGTTGGAGCTATTACTAGCTTTCCAACTTATTTC
1 CTAATACTATGTTGGAGCAATTACCAGCTTTCCAACTTATTTC
15667 CTAAT
1 CTAAT
15672 TTTTCTTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (43 bp):
CTAATACTATGTTGGAGCAATTACCAGCTTTCCAACTTATTTC
Found at i:17129 original size:23 final size:23
Alignment explanation
Indices: 17095--17184 Score: 128
Period size: 23 Copynumber: 4.0 Consensus size: 23
17085 CTGATACCCA
*
17095 TATGAATAGGTATCAATACCCCC
1 TATGAATGGGTATCAATACCCCC
17118 TATGAATGGGTATCAATACCCCC
1 TATGAATGGGTATCAATACCCCC
* *
17141 TATGAATGGGTACCAACA-CCCC
1 TATGAATGGGTATCAATACCCCC
* *
17163 TATGAAAGGATATCAATACCCC
1 TATGAATGGGTATCAATACCCC
17185 ATAAAGGCTC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
22 18 0.31
23 41 0.69
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (23 bp):
TATGAATGGGTATCAATACCCCC
Found at i:17164 original size:45 final size:46
Alignment explanation
Indices: 17095--17184 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 46
17085 CTGATACCCA
* * * *
17095 TATGAATAGGTATCAATACCCCCTATGAATGGGTATCAATACCCCC
1 TATGAATAGGTACCAACACCCCCTATGAAAGGATATCAATACCCCC
*
17141 TATGAATGGGTACCAACA-CCCCTATGAAAGGATATCAATACCCC
1 TATGAATAGGTACCAACACCCCCTATGAAAGGATATCAATACCCC
17185 ATAAAGGCTC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
45 24 0.62
46 15 0.38
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (46 bp):
TATGAATAGGTACCAACACCCCCTATGAAAGGATATCAATACCCCC
Found at i:18909 original size:18 final size:17
Alignment explanation
Indices: 18888--18927 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
18878 ATTTTCATAT
18888 CTTTTAACAATTGGTATC
1 CTTTT-ACAATTGGTATC
**
18906 CTTTTGTAATTGGTATC
1 CTTTTACAATTGGTATC
18923 CTTTT
1 CTTTT
18928 GTCAACAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (17 bp):
CTTTTACAATTGGTATC
Found at i:18916 original size:17 final size:17
Alignment explanation
Indices: 18896--18929 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
18886 ATCTTTTAAC
18896 AATTGGTATCCTTTTGT
1 AATTGGTATCCTTTTGT
18913 AATTGGTATCCTTTTGT
1 AATTGGTATCCTTTTGT
18930 CAACAATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.53
Consensus pattern (17 bp):
AATTGGTATCCTTTTGT
Found at i:23015 original size:11 final size:11
Alignment explanation
Indices: 22999--23028 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
22989 GTCCTCGATT
22999 AATTTTAAGAG
1 AATTTTAAGAG
23010 AATTTTAAGAG
1 AATTTTAAGAG
*
23021 AAATTTAA
1 AATTTTAA
23029 TTAAAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (11 bp):
AATTTTAAGAG
Found at i:27002 original size:38 final size:38
Alignment explanation
Indices: 26933--27006 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
26923 TACATATGTC
* * *
26933 AGAAAACTGCATAAAACATATACATATCAAAATACCTT
1 AGAAAACAGCATAAAACATATACAGAACAAAATACCTT
* * *
26971 AGAAAACAGTATAAAACATTTACGGAACAAAATACC
1 AGAAAACAGCATAAAACATATACAGAACAAAATACC
27007 GATAATACAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.54, C:0.18, G:0.08, T:0.20
Consensus pattern (38 bp):
AGAAAACAGCATAAAACATATACAGAACAAAATACCTT
Found at i:30870 original size:34 final size:30
Alignment explanation
Indices: 30832--30900 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 30
30822 TCGATATAAC
*
30832 AATTTAAGGCAAAATGGTTTTTGGACTTGAATTG
1 AATTTAA--CAAAAT-GTATTTGGACTT-AATTG
30866 AATTT-ACAAAATGTATTTGGACTTAATTG
1 AATTTAACAAAATGTATTTGGACTTAATTG
30895 AATTTA
1 AATTTA
30901 TTCAAAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 10 0.30
30 11 0.33
31 6 0.18
33 1 0.03
34 5 0.15
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.41
Consensus pattern (30 bp):
AATTTAACAAAATGTATTTGGACTTAATTG
Found at i:30908 original size:31 final size:31
Alignment explanation
Indices: 30841--30900 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
30831 CAATTTAAGG
*
30841 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
30872 CAAAAT-GTATTTGGACTT-AATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
30901 TTCAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (31 bp):
CAAAATGGTATTTGGACTTGAATTGAATTTA
Found at i:30989 original size:19 final size:19
Alignment explanation
Indices: 30965--31011 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
30955 AATGTTTTTA
* *
30965 TGAATAGTAATTTACTATT
1 TGAATAGTAAATCACTATT
*
30984 TGAATAGTAAATCACTGTT
1 TGAATAGTAAATCACTATT
31003 TGAATAGTA
1 TGAATAGTA
31012 CCCGAGGCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (19 bp):
TGAATAGTAAATCACTATT
Found at i:31143 original size:21 final size:21
Alignment explanation
Indices: 31117--31158 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
31107 ATTTGAATAT
*
31117 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
31138 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
31159 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:31481 original size:34 final size:32
Alignment explanation
Indices: 31442--31511 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
31432 TTTTGTAAAG
*
31442 GGGAAAGGTTCTAGCTTAGCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
*
31476 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
31508 GGGA
1 GGGA
31512 GTTGTAAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 11 0.32
33 1 0.03
34 22 0.65
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.21
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:38894 original size:28 final size:28
Alignment explanation
Indices: 38837--38974 Score: 111
Period size: 28 Copynumber: 5.0 Consensus size: 28
38827 TTCATGGGCG
* *
38837 TGTTCCTTGATCTGTTATGTGTGGGTTT
1 TGTTCCTTGATCTGTTATGTATGGGATT
* **
38865 TGTTCCTTGATCTGTTGTGTATGTCATT
1 TGTTCCTTGATCTGTTATGTATGGGATT
* *
38893 TGTTTCC-TGATATGTTCTGTATGGGATT
1 TG-TTCCTTGATCTGTTATGTATGGGATT
** **
38921 TGTTCC-CCATCTGTTATGTATGATATT
1 TGTTCCTTGATCTGTTATGTATGGGATT
* * * *
38948 T-TTCCTCGGTTTGTTTTGTATGGGATT
1 TGTTCCTTGATCTGTTATGTATGGGATT
38975 ATATCCTCGG
Statistics
Matches: 87, Mismatches: 21, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
26 4 0.05
27 35 0.40
28 44 0.51
29 4 0.05
ACGTcount: A:0.12, C:0.13, G:0.23, T:0.52
Consensus pattern (28 bp):
TGTTCCTTGATCTGTTATGTATGGGATT
Found at i:38948 original size:27 final size:26
Alignment explanation
Indices: 38874--38952 Score: 61
Period size: 27 Copynumber: 2.9 Consensus size: 26
38864 TTGTTCCTTG
* **
38874 ATCTGTTGTGTATGTCATTTGTTTCCTG
1 ATCTGTTATGTATGT-ATTTG-TTCCCC
* * *
38902 ATATGTTCTGTATGGGATTTGTTCCCC
1 ATCTGTTATGTAT-GTATTTGTTCCCC
38929 ATCTGTTATGTATGATATTT-TTCC
1 ATCTGTTATGTATG-TATTTGTTCC
38953 TCGGTTTGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
26 5 0.12
27 19 0.46
28 16 0.39
29 1 0.02
ACGTcount: A:0.15, C:0.15, G:0.19, T:0.51
Consensus pattern (26 bp):
ATCTGTTATGTATGTATTTGTTCCCC
Found at i:59348 original size:29 final size:30
Alignment explanation
Indices: 59316--59377 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
59306 TATTATAATG
59316 TTTTAT-GTAAAATAAATTA-TCT-AAAATTA
1 TTTTATAG-AAAATAAATTACT-TGAAAATTA
59345 TTTTATAGAAAATAAATTACTTGAAAATTA
1 TTTTATAGAAAATAAATTACTTGAAAATTA
59375 TTT
1 TTT
59378 ATTGTATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
29 18 0.60
30 12 0.40
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (30 bp):
TTTTATAGAAAATAAATTACTTGAAAATTA
Found at i:59621 original size:27 final size:25
Alignment explanation
Indices: 59591--59651 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 25
59581 AATTTTAATT
*
59591 ATTAATATT-TTATTAACATAATACTAA
1 ATTAATATTAATATTAA-AT-ATA-TAA
59618 ATTATTATATTAATATTAAATATATAA
1 ATTA--ATATTAATATTAAATATATAA
59645 ATTAATA
1 ATTAATA
59652 CCACTCATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
25 3 0.10
27 11 0.37
28 3 0.10
29 7 0.23
30 6 0.20
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTAATATTAATATTAAATATATAA
Found at i:59621 original size:30 final size:27
Alignment explanation
Indices: 59587--59648 Score: 72
Period size: 30 Copynumber: 2.2 Consensus size: 27
59577 CCTTAATTTT
*
59587 AATTATTAATATT-TTATTAACATAATACTA
1 AATTATT-ATATTAATATTAA-AT-ATA-TA
59617 AATTATTATATTAATATTAAATATATA
1 AATTATTATATTAATATTAAATATATA
59644 AATTA
1 AATTA
59649 ATACCACTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 7 0.23
28 3 0.10
29 7 0.23
30 13 0.43
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (27 bp):
AATTATTATATTAATATTAAATATATA
Found at i:59631 original size:19 final size:19
Alignment explanation
Indices: 59609--59652 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
59599 TTTATTAACA
*
59609 TAATACTAAAT-TATTATAT
1 TAATACTAAATATA-TAAAT
*
59628 TAATATTAAATATATAAAT
1 TAATACTAAATATATAAAT
59647 TAATAC
1 TAATAC
59653 CACTCATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATACTAAATATATAAAT
Found at i:59992 original size:18 final size:18
Alignment explanation
Indices: 59958--60009 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
59948 GGAAAATTAG
*
59958 ATGGTAAAAT-AATTTACA
1 ATGGAAAAATCAA-TTACA
* * *
59976 TTGGGAAAATGAATTACA
1 ATGGAAAAATCAATTACA
59994 ATGGAAAAATCAATTA
1 ATGGAAAAATCAATTA
60010 TAGCTATCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 26 0.93
19 2 0.07
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (18 bp):
ATGGAAAAATCAATTACA
Found at i:62138 original size:16 final size:15
Alignment explanation
Indices: 62114--62147 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
62104 AAAGAAAATA
*
62114 AAAAGGCATAAATTT
1 AAAAGGCATAAAGTT
62129 AAAAGTGCATAAAGTT
1 AAAAG-GCATAAAGTT
62145 AAA
1 AAA
62148 TAGCAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.24
Consensus pattern (15 bp):
AAAAGGCATAAAGTT
Found at i:63453 original size:80 final size:78
Alignment explanation
Indices: 63353--63504 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 78
63343 AGTAAGTATG
*
63353 CATTAAAAGAATGTAATTTAGATTACAACTATTTAAATTGATATATATAATTTGGTA-TAATTAA
1 CATTAAAAGAATGTAATTTAGATTACAACTATTT-AA-TG-TATATAT-ATTTGGAATTAATTAA
63417 ATAAAATTTTAAATAAA
62 ATAAAATTTTAAATAAA
* * * * *
63434 CATT-AAAGATTGTAATTTAGATTATAAGTCTTTAATGTATATATATTTTGAATTAATTAAATAA
1 CATTAAAAGAATGTAATTTAGATTACAACTATTTAATGTATATATATTTGGAATTAATTAAATAA
*
63498 TATTTTA
66 AATTTTA
63505 TTTATTAATT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
76 6 0.10
77 24 0.38
78 2 0.03
79 2 0.03
80 25 0.40
81 4 0.06
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.43
Consensus pattern (78 bp):
CATTAAAAGAATGTAATTTAGATTACAACTATTTAATGTATATATATTTGGAATTAATTAAATAA
AATTTTAAATAAA
Found at i:63503 original size:77 final size:81
Alignment explanation
Indices: 63353--63504 Score: 197
Period size: 77 Copynumber: 1.9 Consensus size: 81
63343 AGTAAGTATG
*
63353 CATTAAAAGAATGTAATTTAGATTACAACTATTTAAATTGATATATATAATTTGGTATAATTAAA
1 CATTAAAAGAATGTAATTTAGATTACAACTATTTAAATTGATATATATAATTTGATATAATTAAA
63418 TAAAATTTTAAATAAA
66 TAAAATTTTAAATAAA
* * * * *
63434 CATT-AAAGATTGTAATTTAGATTATAAGTCTTT-AA-TG-TATATATATTTTGA-ATTAATTAA
1 CATTAAAAGAATGTAATTTAGATTACAACTATTTAAATTGATATATATAATTTGATA-TAATTAA
*
63494 ATAATATTTTA
65 ATAAAATTTTA
63505 TTTATTAATT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
76 1 0.02
77 29 0.46
78 2 0.03
79 2 0.03
80 25 0.40
81 4 0.06
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.43
Consensus pattern (81 bp):
CATTAAAAGAATGTAATTTAGATTACAACTATTTAAATTGATATATATAATTTGATATAATTAAA
TAAAATTTTAAATAAA
Found at i:63911 original size:25 final size:24
Alignment explanation
Indices: 63862--63925 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 24
63852 TTTTATTTTC
63862 AAAATTTTGAAAAATATCAATTAA
1 AAAATTTTGAAAAATATCAATTAA
* *
63886 AAGAATTTTGAAAAATGTTTAA-TAA
1 AA-AATTTTGAAAAAT-ATCAATTAA
63911 AAAATTTTTGAAAAA
1 AAAA-TTTTGAAAAA
63926 ATATTACCTC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
24 4 0.11
25 28 0.80
26 3 0.09
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.34
Consensus pattern (24 bp):
AAAATTTTGAAAAATATCAATTAA
Found at i:64829 original size:32 final size:34
Alignment explanation
Indices: 64782--64870 Score: 85
Period size: 37 Copynumber: 2.6 Consensus size: 34
64772 ACTTGATCCA
* * *
64782 TTTTCTTT-ATTCTTTTTTCT-CTGTGTTTTTTC
1 TTTTCTTTGCTTCTTTTTTCTGCTCTCTTTTTTC
*
64814 -TTTCTTTGCTTCTTTTCTCTTTGCTCTCTTTTTTC
1 TTTTCTTTGCTTCTTTT-T-TCTGCTCTCTTTTTTC
*
64849 TTTTTCTTTGCTTCTCTTTTCT
1 -TTTTCTTTGCTTCTTTTTTCT
64871 TTGATTTGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
31 7 0.16
32 7 0.16
33 1 0.02
34 2 0.04
35 12 0.27
36 1 0.02
37 15 0.33
ACGTcount: A:0.01, C:0.21, G:0.06, T:0.72
Consensus pattern (34 bp):
TTTTCTTTGCTTCTTTTTTCTGCTCTCTTTTTTC
Found at i:64836 original size:15 final size:16
Alignment explanation
Indices: 64816--64851 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
64806 GTTTTTTCTT
64816 TCTTTGCT-TCTTTTC
1 TCTTTGCTCTCTTTTC
*
64831 TCTTTGCTCTCTTTTT
1 TCTTTGCTCTCTTTTC
64847 TCTTT
1 TCTTT
64852 TTCTTTGCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.00, C:0.25, G:0.06, T:0.69
Consensus pattern (16 bp):
TCTTTGCTCTCTTTTC
Found at i:64859 original size:22 final size:22
Alignment explanation
Indices: 64823--64872 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
64813 CTTTCTTTGC
*
64823 TTCTTTTCTCTTTGCTCTCTTTT
1 TTCTTTTCTCTTTGCT-TCTCTT
64846 TTCTTTT-TCTTTGCTTCTCTT
1 TTCTTTTCTCTTTGCTTCTCTT
64867 TTCTTT
1 TTCTTT
64873 GATTTGATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 11 0.42
22 8 0.31
23 7 0.27
ACGTcount: A:0.00, C:0.24, G:0.04, T:0.72
Consensus pattern (22 bp):
TTCTTTTCTCTTTGCTTCTCTT
Found at i:64870 original size:15 final size:14
Alignment explanation
Indices: 64814--64873 Score: 51
Period size: 15 Copynumber: 4.6 Consensus size: 14
64804 GTGTTTTTTC
64814 TTTCTTTGCTTCTT
1 TTTCTTTGCTTCTT
64828 TTCTCTTTGC-TC--
1 TT-TCTTTGCTTCTT
*
64840 --TCTTT-TTTCTT
1 TTTCTTTGCTTCTT
64851 TTTCTTTGCTTCTCT
1 TTTCTTTGCTTCT-T
64866 TTTCTTTG
1 TTTCTTTG
64874 ATTTGATCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 15
0.68 0.04 0.28
Matches are distributed among these distances:
9 7 0.19
13 5 0.14
14 8 0.22
15 16 0.44
ACGTcount: A:0.00, C:0.23, G:0.07, T:0.70
Consensus pattern (14 bp):
TTTCTTTGCTTCTT
Found at i:69277 original size:111 final size:112
Alignment explanation
Indices: 69081--69292 Score: 263
Period size: 111 Copynumber: 1.9 Consensus size: 112
69071 GTTAGAAAAG
* * * *
69081 TTAGTGGTTAGTAGAGTCCGAAATATAATAATGTGGATTATACCCCGGATCTGGTCACCACAAGG
1 TTAGTGGTTAGTAGAGTCCGAAACAAAATAATGTGGATTATACCCCAGATCTGGTCACCACAAAG
* *
69146 TCGAAACAAATAATTCAAACAA-ATTAACAAAATAAAATAAAATAAA
66 TCGAAACAAATAATTCAAACAATATAAAAAAAATAAAATAAAATAAA
* *
69192 TTAGTGGTTAGTAGAGTCTGAACCAAAATAATGTGGATTATACCCCAGATC-GAGTCACCACAAA
1 TTAGTGGTTAGTAGAGTCCGAAACAAAATAATGTGGATTATACCCCAGATCTG-GTCACCACAAA
* *
69256 GTGGATTA-AAAT-ATGAT-AAACAATATAAAAAAAATAA
65 GTCGA-AACAAATAAT--TCAAACAATATAAAAAAAATAA
69293 TAGTGCAATA
Statistics
Matches: 86, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
110 3 0.03
111 70 0.81
112 13 0.15
ACGTcount: A:0.46, C:0.14, G:0.16, T:0.25
Consensus pattern (112 bp):
TTAGTGGTTAGTAGAGTCCGAAACAAAATAATGTGGATTATACCCCAGATCTGGTCACCACAAAG
TCGAAACAAATAATTCAAACAATATAAAAAAAATAAAATAAAATAAA
Found at i:69328 original size:29 final size:30
Alignment explanation
Indices: 69290--69351 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
69280 ATAAAAAAAA
*
69290 TAATAGTGCAATAAAATAAAAATTAGTTGT
1 TAATAGTGCAATAAAATAAAAATTAGTAGT
* *
69320 TAATA-TGCATTAAAATAAAAGTTAGTAGT
1 TAATAGTGCAATAAAATAAAAATTAGTAGT
69349 TAA
1 TAA
69352 CTTGAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 24 0.83
30 5 0.17
ACGTcount: A:0.50, C:0.03, G:0.13, T:0.34
Consensus pattern (30 bp):
TAATAGTGCAATAAAATAAAAATTAGTAGT
Found at i:69362 original size:29 final size:29
Alignment explanation
Indices: 69290--69362 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
69280 ATAAAAAAAA
* *
69290 TAATAGTGCAATAAAATAAAAATTAGTTGT
1 TAATA-TGAAATAAAATAAAAATTAGTAGT
* * *
69320 TAATATGCATTAAAATAAAAGTTAGTAGT
1 TAATATGAAATAAAATAAAAATTAGTAGT
69349 TAACT-TGAAATAAA
1 TAA-TATGAAATAAA
69363 TACATAGCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 31 0.84
30 6 0.16
ACGTcount: A:0.51, C:0.04, G:0.12, T:0.33
Consensus pattern (29 bp):
TAATATGAAATAAAATAAAAATTAGTAGT
Found at i:71789 original size:30 final size:30
Alignment explanation
Indices: 71755--71813 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
71745 ACCACATGGA
71755 ATATTCCCAGTTAGCTTGTTTATCCAAAGG
1 ATATTCCCAGTTAGCTTGTTTATCCAAAGG
71785 ATATTCCCAGTTAGCTTGTTTATCCAAAG
1 ATATTCCCAGTTAGCTTGTTTATCCAAAG
71814 TTGAGAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (30 bp):
ATATTCCCAGTTAGCTTGTTTATCCAAAGG
Found at i:73175 original size:4 final size:4
Alignment explanation
Indices: 73166--82150 Score: 12773
Period size: 4 Copynumber: 2259.5 Consensus size: 4
73156 CATAAATCAG
73166 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * *
73214 TACG TACG TACG TATA TACA TACA TACA TGCA TACG TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
73262 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
73310 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
73358 TACA TACA TACG TACG TACA TATA TACA TACA TGCA TACG TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
73406 TACA TACA TACG TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
73454 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
73502 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
73550 TACA TACA TACA TACA TACA TACA TACA TACA TAC- -ACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
73596 TACA TACA TACA TACA TACA TACA TACA TACA T--A TACA TATA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * **
73642 TACA TACA TACA TACA TACA TACA TACG TACG TACG TACG TACA TATG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * * * *
73690 TACG TACG TACG TACG TACA TACG TACG TACA TATA TACG TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
73738 TACA TACA TACA TACG TACA TACA TACG TACA TACA TATA TATA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
73786 TATA TATA TACA TACA TACA TACA TACA TACA TACA TACG TACG TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * *
73834 TACA TACG TACA TACA TACG TACG TACA TACG TACA TACA TACG TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * *
73882 TACA TACG TACG TACA TACA TACG TACG TACA TACA TACG TACC TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
73930 TACA TACA TACA TACA TACA TACG TACA TACG TACG TACA TACC TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
73978 TACA TACA TACA TACA TATA TACA TACG TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
74026 TACA TACG TACA TACA TACA TAC- TACA TAC- -ACA TACA TACG TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74071 TACA TACA TACA TACA TACA T--A TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74117 TACA TACA TACA TACA TACA TACA TAC- TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74164 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74212 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74260 TACA TACA TACA TACA TAC- TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74307 TAC- -ACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74353 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74401 TACA T--A TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74447 TACA TACA TACA TACA TACA TAC- -ACA TACA TACA TACA TACA TAC-
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74492 -ACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74539 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74587 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
74635 TACA TACA TACA TAC- TACA TACA TACA TACG TAC- -ACA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * *
74680 TACA TACG TACG TACA TACG TACG TAC- TACA TACG TACG TAC- -ACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
74725 TACA TACG TACA TACA TACG TACA TACA TACA TACG TACA TACA TATA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
74773 TACA TACA TACA TACG TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74821 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74869 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74917 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
74965 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
75013 T--A TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
75059 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
75107 TAC- -ACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
75153 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
75201 TACA TACA TACA TACA TACA TACG TACG TACG TACG TACG TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * * * * *
75249 TACG TACA TACA TACG TACG TACG TACG TACG TACA TACG TACG TACC
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
75297 TACG TACG TACG TACA TACA TACA TACG TACA TACA TACG TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
75345 TACA TACG TACG TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
75393 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
75441 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
75489 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
75537 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACG TACG TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * ** * * * * *
75585 TACG TACG TATG TACA TACA TACG TACG TACG TACG TACG TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
75633 TACA TACA TGCA TACG TATA TACA TACA TACA TACA TACA TACA TATA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
75681 TACA TACG TACA TACA TATA TACA TACA TACA TACG TACA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
75729 TATA TACA TACA TACA T--A TACG TACA TACA TACG TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
75775 TACA TACA TACA TAC- -ACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * *
75821 TACA TACA TACA TACG TACG TACG TACG TACA T--A TATA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
75867 TACG TACG TACG TACG TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
75915 TACA TACA TACA TACA TACA TACA TACA TACA TACG TACG TACG TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* ** * *
75963 TACG TATG TACA TACA TACG TACA TACA CACA TACA T--A TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
76009 TACA TATA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
** * *
76057 TACA TACA TACA TACA TACA TACA TACA TA-A GTGTA AAAA TA-A TGCACA
1 TACA TACA TACA TACA TACA TACA TACA TACA -TACA TACA TACA T--ACA
* * * ** ** * * * * *
76106 GTATA GATA TTGA TGATT TCCC TATA -ACCA AAGGC- TGAAA T-CA GTATTCA
1 -TACA TACA TACA T-ACA TACA TACA TA-CA TA--CA T-ACA TACA -TA--CA
* * * * * * * * * * *
76156 AATCA AATCC CAGA AACA TAAA T-CA GTAC- -ACA CACA CACA CACA CACA
1 TA-CA TA-CA TACA TACA TACA TACA -TACA TACA TACA TACA TACA TACA
* * * * * * * * *
76204 CACA CACA CACA CACA CACA CACA CACA CACA CACA TACA T-CA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
76251 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
76299 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
76347 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
76395 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
76443 TACG TACG TACG TACA TACA TACA TCCA TACG TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
76491 TACG TACG TACA TACA TACA TACA TACA TACC TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
76539 TACA TACA TACA TAC- -ACA TACA TACA TACA TACG TACG TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * * *
76585 TACG TACA TACA TACG TACA TACA TACG TACG TACA TACG TACG TACC
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
76633 TACA TACG TACG TACA TACA TACA TACG TACA TACA TACG TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
76681 TACA TACG TACG TACA TACA TACA TACA TACA TACA TACG TACG TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * * *
76729 TACG TACG TACA TACA TACG TACA TACA TACG TACG TACA TACG TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
76777 TACC TACA TACG TACG TACA TACA TACA TACG TACA TACA TACG TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
76825 TACA TACA TACG TACG TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
76873 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
76921 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
76969 TACA TACA TACA TACA TACA TACA TACA TAC- TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
77016 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
77064 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * *
77112 TACA TATA TACA TACA TACA TACA TACG TACG TACG TACG TACG TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
77160 TACA TACA TACA TACA TGCA TACG TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
77208 TACA TACG TACG TACA TACA TACG TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
77256 TACA TAC- -ACA TACA TACA TACA TACA TACG TACA TACA TATA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
77302 TACA TACA TACG TACA TACA TACG TACA TATA TACG TACA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * * *
77350 TAAA TATA TACC TATA TACA TACG TATA TACA TACG TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
77398 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
77446 TACG TACG TACA TACA TACA TGCA TACG TACA TACA TACA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
77494 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
77542 TACA TACA TACA TACG TACA TACA TATA TACA TACA TACA TACG TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
77590 TACA TACG TACA TACA TACG TACG TACG TACA TACA TACA TACA TGCA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
77638 TACG TACA TACA TACA TATA TACA TACG TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
77686 TACG TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
77734 TAC- -ACA TACA TACA TACG TACA TACA TACG TACA TACA TAC- TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
77779 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
77827 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
77875 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
77923 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
77971 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78019 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78067 TACA TACA TACA TACA TAC- TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78114 TAC- TACA TACA TACA TACA TACA TACA TACA TACA TACA TAC- TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78160 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78208 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78256 TACA TACA TACA TACA TAC- TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78303 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
** * * *
78351 TAC- -ACA TACA TACA TACA TACA TA-A GTGTA AAAA TA-A TGCACA GTATA
1 TACA TACA TACA TACA TACA TACA TACA -TACA TACA TACA T--ACA -TACA
* * ** ** * * * * * *
78399 GATA TTGA TGATT TCCC TATA -ACCA AAGGC- TGAAA T-CA GTATTCA AATCA
1 TACA TACA T-ACA TACA TACA TA-CA TA--CA T-ACA TACA -TA--CA TA-CA
* * * * * * * * * * * *
78449 AATCC CAGA AACA TAAA T-CA GTACA CACA CACA CACA CACA CACA CACA
1 TA-CA TACA TACA TACA TACA -TACA TACA TACA TACA TACA TACA TACA
* * * * * * *
78498 CACA CACA CACA CACA CACA CACA CACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78546 TACA TACA TACA TACA TACA TACA TACA TACA T-CA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78593 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78641 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78689 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
78737 TACA TACA TACA TAC- TACA TACA TACG TACG TACG TACA T--A TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
78782 TACA TCCA TACG TACA TACA TACA TACA TACG TACG TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
78830 TACA TACA TACC TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78878 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78926 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
78974 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
79022 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
79070 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TATA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
79118 TACA TACA TACA TACG TACG TACG TACG TACG TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
79166 TACA TGCA TACG TACA TACA TACA TACA TACA TACA TACG TACG TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
79214 TACA TACG TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
79262 TACA TACA TACA TACA TACA TACG TACA TACA TATA TACA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * *
79310 TACA TACA TACG TACA TATA TACG TACA TACA TACG TACA TATA TACC
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
79358 TATA TACA TACG TATA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
79406 TACA TACA TACA TACA TACA TACG TACG TACG TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
79454 TGCA TACG TACA TACA TACA TACA TACA TACG TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
79502 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
79550 TACA TACA TACA TACA TACA CGTACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA --TACA TACA TACA TACA TACA TACA TACA
79600 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
79648 TACA TACA TACA TAC- -ACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
79694 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
79742 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
79790 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
79838 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TATA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
79886 TACA TACA TACA TACA TACG TACG TACG TACG TACG TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
79934 TACA TACA TGCA TACG TACA TACA TACA TACA TACA TACA TACG TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
79982 TACA TACA TACG TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
80030 TACA TACA TACA TACG TACA TACA TATA TACA TACA TACA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
80078 TACA TATA TACG TACA TACA TACG TACA TATA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
80126 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
80174 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
80222 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
80270 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
80318 TACA TACG TACG TACG TACA TACA TACA TACA TGCA TACG TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
80366 TATA TACA TACA TACA TACA TACA TACA TACA TACG TACG TACG TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * ** *
80414 TACA TACA TACG TACG TACA TACA TACG TACG TATG TACA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
80462 TACA TACA TACC TACA TACA TACG TACA TACA TACG TACA TACA TATA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
80510 TATA TACA T--A TATA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * *
80556 TA-G TACG TACG TACA TACA TACG TACA TACA TACG TACA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * *
80603 TACA TACA TACG TACG TACA TACA TACG TACG TACA TACA TACG TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
80651 TACA TACA TACG TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * **
80699 TACA TACA TACG TACA TACG TACG TACA TACC TATG TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
80747 TACA TACA TACA TACA TACA TACA TACG TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * *
80795 TACA TACG TACG TACA TACA TACG TACA TACA TACG TACC TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
80843 TACA TACA TACG TACG TACA TACA TACA TACG TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
80891 TACA TACA TACG TACG TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
80939 TACA TACA TACA TAC- TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
80986 TAC- -ACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
81032 TACA TACA TAC- -ACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
81078 TACA TACA TACA TACA TAC- -ACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
81124 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
81172 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
81220 TACA TACA TACA TACA TACA TACG TACG TACG TACG TACG TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * * * * *
81268 TACG TACA TATA TACG TACG TACA TACG TACG TACA TACG TACG TACC
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * *
81316 TACG TACG TACG TACA TACA TACA TACG TACA TACA TACG TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
81364 TACA TACG TACG TACA TATA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
81412 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
81460 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
81508 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACC
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * **
81556 TACA TATA TACA TACG TACG TATG TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * * ** * * *
81604 TATA TACG TACG TACG TACG TACG TATG TACA TACA TACG TACG TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
81652 TACG TACGTA TACA TACA TACA TGCA TACG TATA TACA TACA TACA TACA
1 TACA TAC--A TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
81702 TACA TACA TATA TACA TACG TACA TACA TATA TACA TACA TACA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * * * * *
81750 TACA TACA TACG TATA TATA TACG TACA TACA TACG TACA TATA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
81798 TACA TACA TACG TACA TACA TACA TACA TACA AACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
81846 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * ** * * * *
81894 TACA TACA TACG TACG TACG TATG TACG TACA T--A TATA TATA TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * * *
81940 TACG TACG TACG TACG TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
81988 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACG TACG TACG
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
82036 TACG TACTG TACA TACA TACG TACA TAC- -ACA TACA T--A TACA TACA
1 TACA TAC-A TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
82081 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
82129 TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TA
82151 AGTGTAAAAA
Statistics
Matches: 8298, Mismatches: 566, Indels: 234
0.91 0.06 0.03
Matches are distributed among these distances:
2 60 0.01
3 59 0.01
4 8121 0.98
5 37 0.00
6 15 0.00
7 6 0.00
ACGTcount: A:0.46, C:0.25, G:0.04, T:0.25
Consensus pattern (4 bp):
TACA
Found at i:76190 original size:2 final size:2
Alignment explanation
Indices: 76183--76239 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
76173 ATAAATCAGT
76183 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
76225 AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC A
76240 TACATCATAC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:78478 original size:2 final size:2
Alignment explanation
Indices: 78471--78525 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
78461 ATAAATCAGT
78471 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
78513 AC AC AC AC AC AC A
1 AC AC AC AC AC AC A
78526 TACATACATA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:82254 original size:2 final size:2
Alignment explanation
Indices: 82247--82370 Score: 232
Period size: 2 Copynumber: 62.5 Consensus size: 2
82237 ATAAATCAGT
82247 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
82289 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
*
82331 AC AT AC AC AC AC AC AC AC AC AC AC AC -C AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
82371 TACATACATA
Statistics
Matches: 119, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
1 1 0.01
2 118 0.99
ACGTcount: A:0.50, C:0.49, G:0.00, T:0.01
Consensus pattern (2 bp):
AC
Found at i:82482 original size:2 final size:2
Alignment explanation
Indices: 82475--82519 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
82465 ACATAAATCA
82475 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
82517 AC A
1 AC A
82520 TATATATATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:82524 original size:2 final size:2
Alignment explanation
Indices: 82519--82565 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
82509 ACACACACAC
82519 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82561 AT AT A
1 AT AT A
82566 CCTATCTACC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82587 original size:4 final size:4
Alignment explanation
Indices: 82580--82653 Score: 85
Period size: 4 Copynumber: 18.5 Consensus size: 4
82570 TCTACCTACC
* * * *
82580 TACA TACA TACA TACG TACA TACA TACA TACG TACG TACA TACA TAGA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* * *
82628 TACA TACA TATA TATA TGCA TACA TA
1 TACA TACA TACA TACA TACA TACA TA
82654 TATGCATGCA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 60 1.00
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.28
Consensus pattern (4 bp):
TACA
Found at i:82662 original size:16 final size:16
Alignment explanation
Indices: 82582--82664 Score: 58
Period size: 16 Copynumber: 5.2 Consensus size: 16
82572 TACCTACCTA
* * *
82582 CATACATACATACGTA
1 CATACATATATACATG
* * *
82598 CATACATACATACGTA
1 CATACATATATACATG
* * * *
82614 CGTACATACATAGATA
1 CATACATATATACATG
*
82630 CATACATATATATATG
1 CATACATATATACATG
*
82646 CATACATATATGCATG
1 CATACATATATACATG
82662 CAT
1 CAT
82665 TATAAAATTG
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 58 1.00
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.29
Consensus pattern (16 bp):
CATACATATATACATG
Found at i:82800 original size:9 final size:9
Alignment explanation
Indices: 82788--82842 Score: 67
Period size: 9 Copynumber: 6.1 Consensus size: 9
82778 TTTCACATTC
82788 ATATTATTA
1 ATATTATTA
82797 ATATTATT-
1 ATATTATTA
82805 ATATTATTA
1 ATATTATTA
*
82814 ATATTAATA
1 ATATTATTA
*
82823 ATAATTATTG
1 AT-ATTATTA
*
82833 TTATTATTA
1 ATATTATTA
82842 A
1 A
82843 CCAACAAAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
8 8 0.21
9 24 0.63
10 6 0.16
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
ATATTATTA
Found at i:87671 original size:2 final size:2
Alignment explanation
Indices: 87664--87744 Score: 153
Period size: 2 Copynumber: 40.5 Consensus size: 2
87654 ATCCTTTCAT
87664 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
*
87706 AT AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
87745 TATATATATA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 77 1.00
ACGTcount: A:0.51, C:0.48, G:0.00, T:0.01
Consensus pattern (2 bp):
AC
Found at i:88044 original size:8 final size:8
Alignment explanation
Indices: 88031--88126 Score: 50
Period size: 8 Copynumber: 11.4 Consensus size: 8
88021 AAAAAGATAT
88031 AGAAAAAG
1 AGAAAAAG
88039 AGAAAAAAG
1 AG-AAAAAG
*
88048 AGAAAAAA
1 AGAAAAAG
*
88056 AGGAAAAAAA
1 A-G-AAAAAG
*
88066 AGAAAAAA
1 AGAAAAAG
88074 AGAAAGAAG
1 AGAAA-AAG
* *
88083 AAGTAGAAG
1 -AGAAAAAG
* *
88092 A-AGAAAC
1 AGAAAAAG
*
88099 AGAAAAAT
1 AGAAAAAG
*
88107 TGAAAAAG
1 AGAAAAAG
88115 AGAAAAAAG
1 AG-AAAAAG
88124 AGA
1 AGA
88127 GAGAAAAAAG
Statistics
Matches: 68, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
7 3 0.04
8 32 0.47
9 23 0.34
10 10 0.15
ACGTcount: A:0.74, C:0.01, G:0.22, T:0.03
Consensus pattern (8 bp):
AGAAAAAG
Found at i:88047 original size:9 final size:9
Alignment explanation
Indices: 88033--88083 Score: 61
Period size: 9 Copynumber: 5.8 Consensus size: 9
88023 AAAGATATAG
88033 AAAAAGAGA
1 AAAAAGAGA
88042 AAAAAGAGA
1 AAAAAGAGA
88051 AAAAA-AGGA
1 AAAAAGA-GA
*
88060 AAAAAAAGA
1 AAAAAGAGA
88069 AAAAA-AGA
1 AAAAAGAGA
*
88077 AAGAAGA
1 AAAAAGA
88084 AGTAGAAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
8 8 0.21
9 29 0.76
10 1 0.03
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (9 bp):
AAAAAGAGA
Found at i:88054 original size:18 final size:17
Alignment explanation
Indices: 88031--88122 Score: 71
Period size: 16 Copynumber: 5.5 Consensus size: 17
88021 AAAAAGATAT
*
88031 AGAAAAAGAGAAAAAAG
1 AGAAAAAAAGAAAAAAG
*
88048 AGAAAAAAAGGAAAAAAA
1 AGAAAAAAA-GAAAAAAG
*
88066 AGAAAAAAAGAAAGAAG
1 AGAAAAAAAGAAAAAAG
** * * *
88083 A-AGTAGAAGAAGAAAC
1 AGAAAAAAAGAAAAAAG
**
88099 AGAAAAATTG-AAAAAG
1 AGAAAAAAAGAAAAAAG
88115 AGAAAAAA
1 AGAAAAAA
88123 GAGAGAGAAA
Statistics
Matches: 55, Mismatches: 18, Indels: 5
0.71 0.23 0.06
Matches are distributed among these distances:
16 21 0.38
17 18 0.33
18 16 0.29
ACGTcount: A:0.75, C:0.01, G:0.21, T:0.03
Consensus pattern (17 bp):
AGAAAAAAAGAAAAAAG
Found at i:88131 original size:13 final size:13
Alignment explanation
Indices: 88113--88137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88103 AAATTGAAAA
88113 AGAGAAAAAAGAG
1 AGAGAAAAAAGAG
88126 AGAGAAAAAAGA
1 AGAGAAAAAAGA
88138 ACAAAGACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
AGAGAAAAAAGAG
Found at i:89959 original size:37 final size:37
Alignment explanation
Indices: 89845--89960 Score: 171
Period size: 38 Copynumber: 3.1 Consensus size: 37
89835 ATTATTTTCT
*
89845 TTGAAACAAA-TTTCGTCTCCCTTGAGACAGTTTCCC
1 TTGAAACAAAGTTTTGTCTCCCTTGAGACAGTTTCCC
*
89881 TTGAAACAAAGTTTTGTCTCCCCTTGAGACAGTTTCTC
1 TTGAAACAAAGTTTTGTCT-CCCTTGAGACAGTTTCCC
* * *
89919 TTGAAACAAAGTTTTGTCTCTCTTGAGATAGATTCCC
1 TTGAAACAAAGTTTTGTCTCCCTTGAGACAGTTTCCC
89956 TTGAA
1 TTGAA
89961 GCACCAATCT
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
36 10 0.14
37 26 0.36
38 36 0.50
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
TTGAAACAAAGTTTTGTCTCCCTTGAGACAGTTTCCC
Found at i:90026 original size:66 final size:66
Alignment explanation
Indices: 89912--90086 Score: 251
Period size: 66 Copynumber: 2.6 Consensus size: 66
89902 CCTTGAGACA
* * * * * * **
89912 GTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGATAGATTCCCTTGAAGCACCAATCTTTGAAT
1 GTTTCCCTTGAAACAAA-TTTTGTCTCCCTTGAGACAGTTTCCATTGAAACAAAAATCTTTGAAT
*
89977 TT
65 AT
*
89979 GTTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACAGTTTCCATTGAAACAAAAATCTTTGAATA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCATTGAAACAAAAATCTTTGAATA
90044 T
66 T
90045 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCC
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCC
90087 GTCGAAATTT
Statistics
Matches: 97, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
66 82 0.85
67 15 0.15
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (66 bp):
GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCATTGAAACAAAAATCTTTGAATA
T
Found at i:90984 original size:132 final size:132
Alignment explanation
Indices: 90751--91385 Score: 770
Period size: 132 Copynumber: 4.8 Consensus size: 132
90741 CATCCAGCGT
* * *
90751 ATAAGGAGTTGGATCAGTATCAAATTTTTACTCGATTCTATCACAGAAGGAGGTAGATCAGCACC
1 ATAAGGAGTTGGATCAGCATCAAATTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCACC
* * * * * * *
90816 AACACATCGTTCGATTCTATCAAAAAATGAGGTGGATCGACATTTTCATTTCACTCAAATCCAGT
66 GACATATTGTTTGATTCCATCACAAAAGGAGGTGGATCGACATTTTCATTTCACTCAAATCCA-T
90881 -AC
130 CAC
* * * * *
90883 ATAAGGAGTTGGATCAACATCAAATTTTTGTTCGATTCTATCACACAAGGAGGTAGATCAGTACC
1 ATAAGGAGTTGGATCAGCATCAAATTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCACC
* *
90948 GACATATTGTTTGATTCCATCACAGAAGGAGTTGGATCGACATTTTCATTTCACTCAAATCCATC
66 GACATATTGTTTGATTCCATCACAAAAGGAGGTGGATCGACATTTTCATTTCACTCAAATCCATC
91013 AC
131 AC
* * *
91015 ATAAGGAGTTAGATCAGCATCAACTTTTTGTTCGTTCGATTCTATCACAGAATGAGGTAGATCGG
1 ATAAGGAGTTGGATCAGCATCAAATTTTTG--C--TCGATTCTATCACAGAATGAGGTAGATCAG
* * * ** * * * * *
91080 CACTGATATCTCATTCGATTCCATCACAAAAAGAGGTGGATCGACATTTTTATTTCGCTTAAATC
62 CACCGACATATTGTTTGATTCCATCACAAAAGGAGGTGGATCGACATTTTCATTTCACTCAAATC
*
91145 CATCGC
127 CATCAC
* * *
91151 ATAAGGAGTTGGATCAGCATCAACTTTTTGCTCGATTCTATCATAGAATGAGGTACATCAGCACC
1 ATAAGGAGTTGGATCAGCATCAAATTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCACC
* * * * **
91216 GACATCTTGTTTGATTCCATCACATAATGAGGTGGATCGACATTTTTATTTTGCTCAAATCCATC
66 GACATATTGTTTGATTCCATCACAAAAGGAGGTGGATCGACATTTTCATTTCACTCAAATCCATC
**
91281 GT
131 AC
* * * * *
91283 ATAAGGAGTTGGATCAACATTAACTTTTTGCTCAATTCTATCACAGAATGAGGTAGATCAACACC
1 ATAAGGAGTTGGATCAGCATCAAATTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCACC
*
91348 GACAT-TATGTTTGATTCCATCACAGAAGGAGGTGGATC
66 GACATAT-TGTTTGATTCCATCACAAAAGGAGGTGGATC
91386 AATATTGTCA
Statistics
Matches: 439, Mismatches: 58, Indels: 12
0.86 0.11 0.02
Matches are distributed among these distances:
131 2 0.00
132 323 0.74
134 1 0.00
136 113 0.26
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (132 bp):
ATAAGGAGTTGGATCAGCATCAAATTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCACC
GACATATTGTTTGATTCCATCACAAAAGGAGGTGGATCGACATTTTCATTTCACTCAAATCCATC
AC
Found at i:91259 original size:268 final size:264
Alignment explanation
Indices: 90751--91347 Score: 768
Period size: 268 Copynumber: 2.2 Consensus size: 264
90741 CATCCAGCGT
* ** * * *
90751 ATAAGGAGTTGGATCAGTATCAAATTTTTACTCGATTCTATCACAGAAGGAGGTAGATCAGCACC
1 ATAAGGAGTTAGATCAACATCAACTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCACC
* *
90816 AACACATCGTTCGATTCTATCAAAAAATGAGGTGGATCGACATTTTCATTTCACTCAAATCCAGT
66 AACACATCATTCGATTCCATCAAAAAATGAGGTGGATCGACATTTTCATTTCACTCAAATCCAGT
* * *
90881 ACATAAGGAGTTGGATCAACATCAAATTTTTGTTCGATTCTATCACACAAGGAGGTAGATCAGTA
131 ACATAAGGAGTTGGATCAACATCAAATTTTTGCTCGATTCTATCACACAAGGAGGTACATCAGCA
*
90946 CCGACATATTGTTTGATTCCATCACAGAAGGAGTTGGATCGACATTTTCATTTCACTCAAATCCA
196 CCGACATATTGTTTGATTCCATCACAGAAGGAGGTGGATCGACATTTTCATTTCACTCAAATCCA
91011 TCAC
261 TCAC
* *
91015 ATAAGGAGTTAGATCAGCATCAACTTTTTGTTCGTTCGATTCTATCACAGAATGAGGTAGATCGG
1 ATAAGGAGTTAGATCAACATCAACTTTTTG--C--TCGATTCTATCACAGAATGAGGTAGATCAG
** * * * *
91080 CACTGATATC-TCATTCGATTCCATCACAAAAA-GAGGTGGATCGACATTTTTATTTCGCTTAAA
62 CACCAACA-CATCATTCGATTCCATCA-AAAAATGAGGTGGATCGACATTTTCATTTCACTCAAA
* * * * * *
91143 TCCA-TCGCATAAGGAGTTGGATCAGCATCAACTTTTTGCTCGATTCTATCATAGAATGAGGTAC
125 TCCAGT-ACATAAGGAGTTGGATCAACATCAAATTTTTGCTCGATTCTATCACACAAGGAGGTAC
* * * * **
91207 ATCAGCACCGACATCTTGTTTGATTCCATCACATAATGAGGTGGATCGACATTTTTATTTTGCTC
189 ATCAGCACCGACATATTGTTTGATTCCATCACAGAAGGAGGTGGATCGACATTTTCATTTCACTC
**
91272 AAATCCATCGT
254 AAATCCATCAC
* * * *
91283 ATAAGGAGTTGGATCAACATTAACTTTTTGCTCAATTCTATCACAGAATGAGGTAGATCAACACC
1 ATAAGGAGTTAGATCAACATCAACTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCACC
91348 GACATTATGT
Statistics
Matches: 287, Mismatches: 39, Indels: 14
0.84 0.11 0.04
Matches are distributed among these distances:
264 56 0.20
266 2 0.01
267 1 0.00
268 222 0.77
269 6 0.02
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (264 bp):
ATAAGGAGTTAGATCAACATCAACTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCACC
AACACATCATTCGATTCCATCAAAAAATGAGGTGGATCGACATTTTCATTTCACTCAAATCCAGT
ACATAAGGAGTTGGATCAACATCAAATTTTTGCTCGATTCTATCACACAAGGAGGTACATCAGCA
CCGACATATTGTTTGATTCCATCACAGAAGGAGGTGGATCGACATTTTCATTTCACTCAAATCCA
TCAC
Found at i:91279 original size:44 final size:44
Alignment explanation
Indices: 91231--91345 Score: 115
Period size: 44 Copynumber: 2.6 Consensus size: 44
91221 CTTGTTTGAT
* **
91231 TCCATCACATAATGAGGTGGATCGACATT-TTTATTTTGCTCAAA
1 TCCATCACATAATGAGGTGGATCAACATTAACT-TTTTGCTCAAA
** * * *
91275 TCCATCGTATAAGGAGTTGGATCAACATTAACTTTTTGCTCAAT
1 TCCATCACATAATGAGGTGGATCAACATTAACTTTTTGCTCAAA
* * *
91319 TCTATCACAGAATGAGGTAGATCAACA
1 TCCATCACATAATGAGGTGGATCAACA
91346 CCGACATTAT
Statistics
Matches: 55, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
44 54 0.98
45 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (44 bp):
TCCATCACATAATGAGGTGGATCAACATTAACTTTTTGCTCAAA
Found at i:91580 original size:3 final size:3
Alignment explanation
Indices: 91565--91618 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
91555 TTCACATCCA
* *
91565 TAT TAT TAA TAT TAT TA- TAT TAT TAA TAT TAT TAAT TAAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT T-AT TAT TAT
91611 TAT TAT TA
1 TAT TAT TA
91619 ACCAACAAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
2 2 0.04
3 36 0.80
4 7 0.16
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:91586 original size:17 final size:17
Alignment explanation
Indices: 91564--91616 Score: 81
Period size: 17 Copynumber: 3.1 Consensus size: 17
91554 TTTCACATCC
91564 ATATTATTAATATTATT
1 ATATTATTAATATTATT
91581 ATATTATTAATATTATT
1 ATATTATTAATATTATT
*
91598 A-ATTAATTATTATTATT
1 ATATT-ATTAATATTATT
91615 AT
1 AT
91617 TAACCAACAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
16 3 0.09
17 30 0.91
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTATTAATATTATT
Found at i:91619 original size:20 final size:21
Alignment explanation
Indices: 91565--91619 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
91555 TTCACATCCA
*
91565 TATTATTAATATT-ATTATAT
1 TATTATTATTATTAATTATAT
*
91585 TATTAATATTATTAATTA-AT
1 TATTATTATTATTAATTATAT
91605 TATTATTATTATTAA
1 TATTATTATTATTAA
91620 CCAACAAGAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 27 0.87
21 4 0.13
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TATTATTATTATTAATTATAT
Found at i:94745 original size:31 final size:31
Alignment explanation
Indices: 94691--94760 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
94681 AAACATAATG
* * *
94691 TTTGATCATTCTCGTTTTTATTTAAATAAGA
1 TTTGGTCATTCTCATTTTCATTTAAATAAGA
* *
94722 TTTGGTCATTTTCATTTTCATTTAATTAAGA
1 TTTGGTCATTCTCATTTTCATTTAAATAAGA
*
94753 TGTGGTCA
1 TTTGGTCA
94761 CTAAGGTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.51
Consensus pattern (31 bp):
TTTGGTCATTCTCATTTTCATTTAAATAAGA
Found at i:106142 original size:20 final size:20
Alignment explanation
Indices: 106119--106182 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 20
106109 AACTTAAATC
106119 AAAATAATTAAAATAA-ATAT
1 AAAATAATT-AAATAATATAT
*
106139 AAAAT--TTTAATAATATAT
1 AAAATAATTAAATAATATAT
*
106157 AAAATAATT-TAT-ATGATAT
1 AAAATAATTAAATAAT-ATAT
106176 AAAATAA
1 AAAATAA
106183 ATTTAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
17 5 0.13
18 13 0.34
19 13 0.34
20 7 0.18
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATAATTAAATAATATAT
Found at i:106198 original size:13 final size:12
Alignment explanation
Indices: 106176--106236 Score: 50
Period size: 13 Copynumber: 4.8 Consensus size: 12
106166 TATATGATAT
*
106176 AAAATAAATTTAA
1 AAAATTAATTT-A
*
106189 AAAATTAATTTT
1 AAAATTAATTTA
*
106201 AAAATTAATATA
1 AAAATTAATTTA
*
106213 TATAATATAATATTA
1 -AAAAT-TAAT-TTA
106228 AAAATTAAT
1 AAAATTAAT
106237 ATTTAATTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
12 10 0.26
13 18 0.47
14 8 0.21
15 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAATTAATTTA
Found at i:106216 original size:40 final size:41
Alignment explanation
Indices: 106162--106242 Score: 105
Period size: 40 Copynumber: 2.0 Consensus size: 41
106152 TATATAAAAT
*
106162 AATTTATATGATATAAAATAA-ATTTAAAAAATTAAT-TTTAA
1 AATTAATATGATATAAAATAATA-TT-AAAAATTAATATTTAA
*
106203 AATTAATAT-ATATAATATAATATTAAAAATTAATATTTAA
1 AATTAATATGATATAAAATAATATTAAAAATTAATATTTAA
106243 TTTATTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
39 10 0.28
40 17 0.47
41 9 0.25
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (41 bp):
AATTAATATGATATAAAATAATATTAAAAATTAATATTTAA
Found at i:106242 original size:14 final size:14
Alignment explanation
Indices: 106183--106242 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
106173 TATAAAATAA
106183 ATTTAAAAAATTAAT
1 ATTT-AAAAATTAAT
106198 -TTT-AAAATTAAT
1 ATTTAAAAATTAAT
* *
106210 ATAT-ATAATATAAT
1 ATTTAAAAAT-TAAT
106224 A-TTAAAAATTAAT
1 ATTTAAAAATTAAT
106237 ATTTAA
1 ATTTAA
106243 TTTATTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
12 9 0.24
13 12 0.32
14 16 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
ATTTAAAAATTAAT
Found at i:106270 original size:12 final size:12
Alignment explanation
Indices: 106189--106295 Score: 83
Period size: 12 Copynumber: 8.7 Consensus size: 12
106179 ATAAATTTAA
*
106189 AAAATTAATTTT
1 AAAATTAATATT
106201 AAAATTAATATAT
1 AAAATTAATAT-T
*
106214 ATAATATAATATT
1 AAAAT-TAATATT
106227 AAAAATTAATATT
1 -AAAATTAATATT
* * * **
106240 TAATTTATTAAAA
1 AAAATTAAT-ATT
106253 AAAATTAATATT
1 AAAATTAATATT
*
106265 AAAATTAAAATT
1 AAAATTAATATT
106277 -AAATATAATA-T
1 AAAAT-TAATATT
106288 AAAATTAA
1 AAAATTAA
106296 ATATAAAACC
Statistics
Matches: 74, Mismatches: 15, Indels: 13
0.73 0.15 0.13
Matches are distributed among these distances:
11 8 0.11
12 36 0.49
13 20 0.27
14 10 0.14
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AAAATTAATATT
Found at i:106298 original size:12 final size:12
Alignment explanation
Indices: 106253--106303 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
106243 TTTATTAAAA
106253 AAAATT-AATATT
1 AAAATTAAATA-T
106265 AAAATTAAA-AT
1 AAAATTAAATAT
*
106276 TAAA-TATAATAT
1 AAAATTA-AATAT
106288 AAAATTAAATAT
1 AAAATTAAATAT
106300 AAAA
1 AAAA
106304 CCTCTTTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
10 2 0.06
11 6 0.18
12 21 0.64
13 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAAATAT
Found at i:114651 original size:2 final size:2
Alignment explanation
Indices: 114644--114669 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
114634 AAAACAATTA
114644 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
114670 TATTTTAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:115392 original size:21 final size:17
Alignment explanation
Indices: 115263--115406 Score: 91
Period size: 17 Copynumber: 8.4 Consensus size: 17
115253 AGCTATGAAC
*
115263 TTCATTTAAC-AAATTAG
1 TTCA-TTAACTAAACTAG
* *
115280 TTCATTGATTAAACTAG
1 TTCATTAACTAAACTAG
*
115297 TTCATTCA-TCAAACTAG
1 TTCATTAACT-AAACTAG
* * *
115314 TTCATTCAA-GATTACAAG
1 TTCATT-AACTA-AACTAG
* *
115332 TTCGTTGAA-TAAAGTTAG
1 TTCATT-AACTAAA-CTAG
115350 TTCATTAACTAAACTAG
1 TTCATTAACTAAACTAG
115367 TTCATTAACTAAACTAG
1 TTCATTAACTAAACTAG
* *
115384 TCCATTCA-TCAAACTAG
1 TTCATTAACT-AAACTAG
115401 TTCATT
1 TTCATT
115407 TATTAAATTA
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
16 5 0.05
17 72 0.71
18 24 0.24
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.38
Consensus pattern (17 bp):
TTCATTAACTAAACTAG
Found at i:119632 original size:46 final size:46
Alignment explanation
Indices: 119563--119651 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 46
119553 ATACGTATGT
* * *
119563 ATTTTCATTGGTGGCATCTTTTCATGCCAATTATGCACCGTTAAAC
1 ATTTTCATTGATGGCATCCTTTCATGCCAATAATGCACCGTTAAAC
* * *
119609 ATTTTCATTTATGGCATCCTTTCATGCCTATAATGTACCGTTA
1 ATTTTCATTGATGGCATCCTTTCATGCCAATAATGCACCGTTA
119652 TGCATTTAGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (46 bp):
ATTTTCATTGATGGCATCCTTTCATGCCAATAATGCACCGTTAAAC
Found at i:119658 original size:46 final size:46
Alignment explanation
Indices: 119558--119658 Score: 121
Period size: 46 Copynumber: 2.2 Consensus size: 46
119548 CTTATATACG
* * * *
119558 TATGTATTTTCATTGGTGGCATCTTTTCATGCCAATTATGCACCGT
1 TATGCATTTTCATTGATGGCATCCTTTCATGCCAATAATGCACCGT
** * * *
119604 TAAACATTTTCATTTATGGCATCCTTTCATGCCTATAATGTACCGT
1 TATGCATTTTCATTGATGGCATCCTTTCATGCCAATAATGCACCGT
119650 TATGCATTT
1 TATGCATTT
119659 AGTCTTTTAC
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.44
Consensus pattern (46 bp):
TATGCATTTTCATTGATGGCATCCTTTCATGCCAATAATGCACCGT
Found at i:119792 original size:81 final size:81
Alignment explanation
Indices: 119661--120220 Score: 689
Period size: 81 Copynumber: 7.1 Consensus size: 81
119651 ATGCATTTAG
* * * * *
119661 TCTTTTACCCAAAGGTATTTAA-CTTTCATCTAACTTGCATGATTGACACCTTTCTACCAAATTC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGC
* *
119725 ACAGTTAGGCATTTAA
66 ACAGCTAGGCAATTAA
* *
119741 TCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTATCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGC
119806 ACAGCTAGGCAATTAA
66 ACAGCTAGGCAATTAA
* * *
119822 TCTTTTACTCAAAGGTATTTAACCTTTCATGTAACTCGCATAATTGACACCTTTCTTTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGC
*
119887 ATAGCTAGGCAATTAA
66 ACAGCTAGGCAATTAA
* * * * * *
119903 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAGCTGGCATAATTGATACATTTCTGTTAAATGG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGC
* *
119968 ACAGATAGGCAATTAG
66 ACAGCTAGGCAATTAA
* * * **
119984 T-TTTTTCTCAAAGCTATTTAACCTTTCATCTAACTAGCATAATTGACATATTTCTATCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGC
120048 ACAGCTAGGCAATTAA
66 ACAGCTAGGCAATTAA
* * *
120064 TCTTTTAATCAAAGGTATTTAACC-TT--TC--A-T--C-TAATTGTCA---TTCTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGC
* * *
120117 ACAACTAAGAAATTAA
66 ACAGCTAGGCAATTAA
* * * * *
120133 TCTTTTACTCAAAGCTATTTAACCTTTCATCTAAATGGCATAATTAACATCTTTCTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGC
120198 ACAGCTAGGCAATTAA
66 ACAGCTAGGCAATTAA
120214 TCTTTTA
1 TCTTTTA
120221 TTTAAAATAG
Statistics
Matches: 416, Mismatches: 50, Indels: 27
0.84 0.10 0.05
Matches are distributed among these distances:
69 47 0.11
70 2 0.00
72 10 0.02
73 1 0.00
74 1 0.00
75 2 0.00
76 1 0.00
77 1 0.00
78 9 0.02
80 91 0.22
81 251 0.60
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (81 bp):
TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGC
ACAGCTAGGCAATTAA
Found at i:119844 original size:161 final size:161
Alignment explanation
Indices: 119661--120220 Score: 705
Period size: 161 Copynumber: 3.5 Consensus size: 161
119651 ATGCATTTAG
* * * * * *
119661 TCTTTTACCCAAAGGTATTTAA-CTTTCATCTAACTTGCATGATTGACACCTTTCTACCAAATTC
1 TCTTTTACTCAAAGCTATTTAACCTTTCATCTAACTAGCATAATTGACACCTTTCTATCAAATGC
* * *
119725 ACAGTTAGGCATTTAATCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGCATGATTGACA
66 ACAGCTAGGCAATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACA
*
119790 CCTTTCTATCAAATGCACAGCTAGGCAATTAA
131 -CTTTCTGTCAAATGCACAGCTAGGCAATTAA
* * * *
119822 TCTTTTACTCAAAGGTATTTAACCTTTCATGTAACTCGCATAATTGACACCTTTCTTTCAAATGC
1 TCTTTTACTCAAAGCTATTTAACCTTTCATCTAACTAGCATAATTGACACCTTTCTATCAAATGC
* * * *
119887 ATAGCTAGGCAATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAGCTGGCATAATTGATA
66 ACAGCTAGGCAATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACA
* * * *
119952 CATTTCTGTTAAATGGACAGATAGGCAATTAG
131 C-TTTCTGTCAAATGCACAGCTAGGCAATTAA
* **
119984 T-TTTTTCTCAAAGCTATTTAACCTTTCATCTAACTAGCATAATTGACATATTTCTATCAAATGC
1 TCTTTTACTCAAAGCTATTTAACCTTTCATCTAACTAGCATAATTGACACCTTTCTATCAAATGC
*
120048 ACAGCTAGGCAATTAATCTTTTAATCAAAGGTATTTAACCTTTCATCTAA-T----TG--T--CA
66 ACAGCTAGGCAATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACA
* * *
120104 --TTCTGTCAAATGCACAACTAAGAAATTAA
131 CTTTCTGTCAAATGCACAGCTAGGCAATTAA
* * * * *
120133 TCTTTTACTCAAAGCTATTTAACCTTTCATCTAAATGGCATAATTAACATCTTTCTGTCAAATGC
1 TCTTTTACTCAAAGCTATTTAACCTTTCATCTAACTAGCATAATTGACACCTTTCTATCAAATGC
120198 ACAGCTAGGCAATTAATCTTTTA
66 ACAGCTAGGCAATTAATCTTTTA
120221 TTTAAAATAG
Statistics
Matches: 352, Mismatches: 44, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
149 23 0.07
150 80 0.23
152 1 0.00
154 1 0.00
156 1 0.00
160 1 0.00
161 125 0.36
162 120 0.34
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (161 bp):
TCTTTTACTCAAAGCTATTTAACCTTTCATCTAACTAGCATAATTGACACCTTTCTATCAAATGC
ACAGCTAGGCAATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACA
CTTTCTGTCAAATGCACAGCTAGGCAATTAA
Found at i:120086 original size:242 final size:230
Alignment explanation
Indices: 119661--120220 Score: 687
Period size: 242 Copynumber: 2.4 Consensus size: 230
119651 ATGCATTTAG
* * * * ** *
119661 TCTTTTACCCAAAGGTATTTAA-CTTTCATCTAACTTGCATGATTGACACCTTTCTACCAAATTC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGA-ACATTTCTGTCAAATGC
* * * *
119725 ACAGTTAGGCATTTAATCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGCATGATTGACA
65 ACAGATAGGCAATTAATCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTAGCATAATTGACA
* *
119790 CCTTTCTATCAAATGCACAGCTAGGCAATTAATCTTTTACTCAAAGGTATTTAACCTTTCATGTA
130 CATTTCTATCAAATGCACAGCTAGGCAATTAATCTTTTAATCAAAGGTATTTAACCTTTC-----
* * * * *
119855 ACTCGCATAATTGACACCTTTCTTTCAAATGCATAGCTAGGCAATTAA
190 A-T--C-TAATTGACA---TTCTGTCAAATGCACAACTAAGAAATTAA
* * *
119903 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAGCTGGCATAATTGATACATTTCTGTTAAATGG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGA-ACATTTCTGTCAAATGC
* *
119968 ACAGATAGGCAATTAGT-TTTTTCTCAAA-GCTATTTAACCTTTCATCTAACTAGCATAATTGAC
65 ACAGATAGGCAATTAATCTTTTACTCAAAGGC-ATTTAACCTTTCATCTAACTAGCATAATTGAC
*
120031 ATATTTCTATCAAATGCACAGCTAGGCAATTAATCTTTTAATCAAAGGTATTTAACCTTTCATCT
129 ACATTTCTATCAAATGCACAGCTAGGCAATTAATCTTTTAATCAAAGGTATTTAACCTTTCATCT
*
120096 AATTGTCATTCTGTCAAATGCACAACTAAGAAATTAA
194 AATTGACATTCTGTCAAATGCACAACTAAGAAATTAA
* *
120133 TCTTTTACTCAAAGCTATTTAACCTTTCATCTAAATGGCATAATT-AACATCTTTCTGTCAAATG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGAACA--TTTCTGTCAAATG
*
120197 CACAGCTAGGCAATTAATCTTTTA
64 CACAGATAGGCAATTAATCTTTTA
120221 TTTAAAATAG
Statistics
Matches: 279, Mismatches: 34, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
228 3 0.01
229 1 0.00
230 93 0.33
231 4 0.01
233 8 0.03
234 1 0.00
236 1 0.00
237 1 0.00
241 2 0.01
242 119 0.43
243 46 0.16
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (230 bp):
TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGAACATTTCTGTCAAATGCA
CAGATAGGCAATTAATCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTAGCATAATTGACAC
ATTTCTATCAAATGCACAGCTAGGCAATTAATCTTTTAATCAAAGGTATTTAACCTTTCATCTAA
TTGACATTCTGTCAAATGCACAACTAAGAAATTAA
Found at i:120131 original size:69 final size:69
Alignment explanation
Indices: 120035--120166 Score: 210
Period size: 69 Copynumber: 1.9 Consensus size: 69
120025 ATTGACATAT
* * * *
120035 TTCTATCAAATGCACAGCTAGGCAATTAATCTTTTAATCAAAGGTATTTAACCTTTCATCTAATT
1 TTCTATCAAATGCACAACTAAGAAATTAATCTTTTAATCAAAGCTATTTAACCTTTCATCTAATT
120100 GTCA
66 GTCA
* *
120104 TTCTGTCAAATGCACAACTAAGAAATTAATCTTTTACTCAAAGCTATTTAACCTTTCATCTAA
1 TTCTATCAAATGCACAACTAAGAAATTAATCTTTTAATCAAAGCTATTTAACCTTTCATCTAA
120167 ATGGCATAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 57 1.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (69 bp):
TTCTATCAAATGCACAACTAAGAAATTAATCTTTTAATCAAAGCTATTTAACCTTTCATCTAATT
GTCA
Found at i:125007 original size:19 final size:19
Alignment explanation
Indices: 124983--125019 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
124973 AGGTCAACAG
*
124983 TCAGGTCAAGGTCAATGGA
1 TCAGGTCAAAGTCAATGGA
125002 TCAGGTCAAAGTCAATGG
1 TCAGGTCAAAGTCAATGG
125020 GTTTGGTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (19 bp):
TCAGGTCAAAGTCAATGGA
Found at i:132158 original size:18 final size:18
Alignment explanation
Indices: 132135--132174 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
132125 TTTACTATAG
132135 CTAAAGTTATATCTAAAT
1 CTAAAGTTATATCTAAAT
132153 CTAAAGTTATATCTAAAT
1 CTAAAGTTATATCTAAAT
132171 CTAA
1 CTAA
132175 CCCGTGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (18 bp):
CTAAAGTTATATCTAAAT
Found at i:136252 original size:9 final size:9
Alignment explanation
Indices: 136235--136267 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
136225 AATAAAAATA
*
136235 AATAGTATT
1 AATAATATT
136244 AATAATATT
1 AATAATATT
136253 AATAATA-T
1 AATAATATT
136261 AATAATA
1 AATAATA
136268 ATTACTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (9 bp):
AATAATATT
Found at i:136506 original size:37 final size:37
Alignment explanation
Indices: 136447--137444 Score: 513
Period size: 37 Copynumber: 26.2 Consensus size: 37
136437 ATCAGACTCG
* * *
136447 AGATTGATTTGCTTCACCACTCTTCGATGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*
136484 AGATGGATTTACTTCACTACTCTTCGGTGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* *
136521 AAATGGATTTGCTTCACTACTCTTCGGTGAATGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * * * *
136558 AAATGGATTTGCTTAATTACTCTTAGGTAAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * *
136595 AGATTGG-TTTTCTTCACTACTATTTGGTGAAGGCTTA
1 AGA-TGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* ** * * *
136632 AGATGGCTCGGAGGATTTAATTA-TCATGCTC-G-GAAGGCTTA
1 AGATGGAT---TTG-CTTCACTACTC-T--TCGGTGAAGGCTTA
* * * **
136673 CTGATGAATTTGCTTTACTACTCTTTAGTGAAGGCTTA
1 -AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * *
136711 AGATTGATTTGCTTCACTACTCTTCGCTTAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*** **** * * *
136748 AGATGG-CCCGAAGGACTTAATCATCATGCTCGGAAGGCTTA
1 AGATGGATTTGCTTCAC-TACTCTTC--GGT--GAAGGCTTA
* * *
136789 CTGATGAATTTGCTTCACTACTCTTCAGTGAAGGCTTA
1 -AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * * *
136827 AGATTGATTTGTTTCACTACTCTTTGGTGAAGGTTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * **** * * *
136864 AGATGG-CTCGGAGGACTTAATCATCATGCTCGGAAGGCTTA
1 AGATGGATTTGCTTCAC-TACTCTTC--GGT--GAAGGCTTA
* * * *
136905 CTGATGAATTTGCTACACTACTCTTCAGTGAAGGCTTA
1 -AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* *
136943 AGATTGATTTGCTTCACTACTCTTCGATGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*** **** * * * *
136980 AGATGG-CCCGAAGGACTTAATCATCATGCTCAGAAGGTTTA
1 AGATGGATTTGCTTCAC-TACTCTTC--GGT--GAAGGCTTA
* * * * *
137021 CTGATGAATTTGATTCACTACTCATCAGTGAAGGCTTA
1 -AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* *
137059 AGATTGATTTGCTTCACTACTCTTCGGTGAAGCCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*
137096 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTT
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*** **** * * * *
137133 AGATGG-CCCGAAGGACTTAATCATCATGCTCGGAAAGCTTA
1 AGATGGATTTGCTTCAC-TACTCTTC--GGT--GAAGGCTTA
* * *
137174 CTGATGAATTTGCTTCACTACTCTTCAGTGAAGGCTTA
1 -AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* *
137212 AGATTGATTTG-TCTCACTACTCTTTGGTGAAGGCTTA
1 AGATGGATTTGCT-TCACTACTCTTCGGTGAAGGCTTA
*** **** * * * *
137249 AGATGG-CCCGGAGGACTTAATCATCATGCTCGGAAGCCTTA
1 AGATGGATTTGCTTCAC-TACTCTTC--GGT--GAAGGCTTA
* * * * *
137290 CTGATGAATTTGCTTCAATACTCATCAGTGAAGGCTTA
1 -AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*
137328 AGATTGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* *
137365 ATATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTT
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * *
137402 AGATTGATTTGCTTCATTACTCTTTGGTGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
137439 AGATGG
1 AGATGG
137445 CTCAGAGGAC
Statistics
Matches: 700, Mismatches: 211, Indels: 100
0.69 0.21 0.10
Matches are distributed among these distances:
36 21 0.03
37 470 0.67
38 60 0.09
39 14 0.02
40 6 0.01
41 54 0.08
42 58 0.08
43 17 0.02
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (37 bp):
AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
Found at i:136710 original size:116 final size:116
Alignment explanation
Indices: 136564--137101 Score: 817
Period size: 116 Copynumber: 4.6 Consensus size: 116
136554 CTTAAAATGG
* * * * * * *
136564 ATTTGCTTAATTACTCTT-AGGTAAAGGCTTAAGATTGGTTTTCTTCACTACTATTTGGTGAAGG
1 ATTTGCTTCACTACTCTTCA-GTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGG
* * * *
136628 CTTAAGATGGCTCGGAGGATTTAATTATCATGCTCGGAAGGCTTACTGATGA
65 CTTAAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
* * * *
136680 ATTTGCTTTACTACTCTTTAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGCTTAAGGC
1 ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGGC
136745 TTAAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
66 TTAAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
* * *
136796 ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGTTTCACTACTCTTTGGTGAAGGT
1 ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGGC
* *
136861 TTAAGATGGCTCGGAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
66 TTAAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
* *
136912 ATTTGCTACACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGATGAAGGC
1 ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGGC
* *
136977 TTAAGATGGCCCGAAGGACTTAATCATCATGCTCAGAAGGTTTACTGATGA
66 TTAAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
* * *
137028 ATTTGATTCACTACTCATCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGCC
1 ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGGC
137093 TTAAGATGG
66 TTAAGATGG
137102 ATTTGCTTCA
Statistics
Matches: 385, Mismatches: 36, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
116 384 1.00
117 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35
Consensus pattern (116 bp):
ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGGC
TTAAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
Found at i:137069 original size:153 final size:152
Alignment explanation
Indices: 136912--137254 Score: 560
Period size: 153 Copynumber: 2.2 Consensus size: 152
136902 TTACTGATGA
* *
136912 ATTTGCTACACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGATGAAGGC
1 ATTTGCT-CACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTTCGATGAAGGC
* *
136977 TTAAGATGGCCCGAAGGACTTAATCATCATGCTCAGAAGGTTTACTGATGAATTTGATTCACTAC
65 TTAAGATGGCCCGAAGGACTTAATCATCATGCTCAGAAAGCTTACTGATGAATTTGATTCACTAC
137042 TCATCAGTGAAGGCTTAAGATTG
130 TCATCAGTGAAGGCTTAAGATTG
* *
137065 ATTTGCTTCACTACTCTTCGGTGAAGCCTTAAGATGGATTTGCTTCACTACTCTTCGGTGAAGGC
1 ATTTGC-TCACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTTCGATGAAGGC
* * *
137130 TTTAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAAGCTTACTGATGAATTTGCTTCACTAC
65 TTAAGATGGCCCGAAGGACTTAATCATCATGCTCAGAAAGCTTACTGATGAATTTGATTCACTAC
*
137195 TCTTCAGTGAAGGCTTAAGATTG
130 TCATCAGTGAAGGCTTAAGATTG
*
137218 ATTTGTCTCACTACTCTTTGGTGAAGGCTTAAGATGG
1 ATTTG-CTCACTACTCTTCGGTGAAGGCTTAAGATGG
137255 CCCGGAGGAC
Statistics
Matches: 176, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
153 174 0.99
154 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (152 bp):
ATTTGCTCACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTTCGATGAAGGCT
TAAGATGGCCCGAAGGACTTAATCATCATGCTCAGAAAGCTTACTGATGAATTTGATTCACTACT
CATCAGTGAAGGCTTAAGATTG
Found at i:137185 original size:116 final size:116
Alignment explanation
Indices: 137065--137370 Score: 499
Period size: 116 Copynumber: 2.6 Consensus size: 116
137055 CTTAAGATTG
* * *
137065 ATTTGCTTCACTACTCTTCGGTGAAGCCTTAAGATGGATTTGCTTCACTACTCTTCGGTGAAGGC
1 ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGGC
*
137130 TTTAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAAG-CTTACTGATGA
66 TTAAGATGGCCCGAAGGACTTAATCATCATGCTCGG-AAGCCTTACTGATGA
*
137181 ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTG-TCTCACTACTCTTTGGTGAAGG
1 ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCT-TCACTACTCTTCGGTGAAGG
*
137245 CTTAAGATGGCCCGGAGGACTTAATCATCATGCTCGGAAGCCTTACTGATGA
65 CTTAAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAGCCTTACTGATGA
* *
137297 ATTTGCTTCAATACTCATCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGGC
1 ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGGC
*
137362 TTAATATGG
66 TTAAGATGG
137371 ATTTGCTTCA
Statistics
Matches: 177, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
115 4 0.02
116 172 0.97
117 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (116 bp):
ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGGTGAAGGC
TTAAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAGCCTTACTGATGA
Found at i:137275 original size:269 final size:269
Alignment explanation
Indices: 136796--137405 Score: 1026
Period size: 269 Copynumber: 2.3 Consensus size: 269
136786 TTACTGATGA
* * * *
136796 ATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGATTTGTTTCACTACTCTTTGGTGAAGG-
1 ATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTTCGGTGAAGGC
* * *
136860 TTTAAGATGGCTCGGAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGAATTTGCTACACTA
66 TTT-AGATGGCCCGAAGGACTTAATCATCATGCTCGGAAAGCTTACTGATGAATTTGCTACACTA
136925 CTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGATGAAGGCTTAAGATGGCCCG
130 CTCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGATGAAGGCTTAAGATGGCCCG
** *
136990 AAGGACTTAATCATCATGCTCAGAAGGTTTACTGATGAATTTGATTCACTACTCATCAGTGAAGG
195 AAGGACTTAATCATCATGCTCAGAAGCCTTACTGATGAATTTGATTCAATACTCATCAGTGAAGG
137055 CTTAAGATTG
260 CTTAAGATTG
*
137065 ATTTGCTTCACTACTCTTCGGTGAAGCCTTAAGATGGATTTGCTTCACTACTCTTCGGTGAAGGC
1 ATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTTCGGTGAAGGC
*
137130 TTTAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAAGCTTACTGATGAATTTGCTTCACTAC
66 TTTAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAAGCTTACTGATGAATTTGCTACACTAC
* *
137195 TCTTCAGTGAAGGCTTAAGATTGATTTG-TCTCACTACTCTTTGGTGAAGGCTTAAGATGGCCCG
131 TCTTCAGTGAAGGCTTAAGATTGATTTGCT-TCACTACTCTTCGATGAAGGCTTAAGATGGCCCG
* * *
137259 GAGGACTTAATCATCATGCTCGGAAGCCTTACTGATGAATTTGCTTCAATACTCATCAGTGAAGG
195 AAGGACTTAATCATCATGCTCAGAAGCCTTACTGATGAATTTGATTCAATACTCATCAGTGAAGG
137324 CTTAAGATTG
260 CTTAAGATTG
*
137334 ATTTGCTTCACTACTCTTCGGTGAAGGCTTAATATGGATTTGCTTCACTACTCTTCGGTGAAGGC
1 ATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTTCGGTGAAGGC
137399 TTTAGAT
66 TTTAGAT
137406 TGATTTGCTT
Statistics
Matches: 320, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
268 1 0.00
269 316 0.99
270 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (269 bp):
ATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTTCGGTGAAGGC
TTTAGATGGCCCGAAGGACTTAATCATCATGCTCGGAAAGCTTACTGATGAATTTGCTACACTAC
TCTTCAGTGAAGGCTTAAGATTGATTTGCTTCACTACTCTTCGATGAAGGCTTAAGATGGCCCGA
AGGACTTAATCATCATGCTCAGAAGCCTTACTGATGAATTTGATTCAATACTCATCAGTGAAGGC
TTAAGATTG
Found at i:137712 original size:42 final size:41
Alignment explanation
Indices: 137639--137733 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 41
137629 TATGGATCGT
* *
137639 CCGAAGGACTTATCATCTTGCTCGAAAGACTTAC-AGATGAC
1 CCGAAGGACTTAGCATCATGCTCGAAAGACTTACTA-ATGAC
* * *
137680 CCGAAGGATTTAAGCATCATGCTCGGAAGACTTACTAATGGC
1 CCGAAGGACTT-AGCATCATGCTCGAAAGACTTACTAATGAC
137722 CCGAAGGACTTA
1 CCGAAGGACTTA
137734 TAAATTTTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 11 0.24
42 34 0.74
43 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (41 bp):
CCGAAGGACTTAGCATCATGCTCGAAAGACTTACTAATGAC
Found at i:139907 original size:14 final size:14
Alignment explanation
Indices: 139869--139909 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
139859 TTTCTTTTTT
139869 TTTCC-TTTTTTCC
1 TTTCCTTTTTTTCC
*
139882 TTTCTCTATTTTTCC
1 TTTC-CTTTTTTTCC
139897 TTTCCTTTTTTTC
1 TTTCCTTTTTTTC
139910 TATATTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 4 0.17
14 9 0.38
15 11 0.46
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTCCTTTTTTTCC
Found at i:144141 original size:4 final size:4
Alignment explanation
Indices: 144132--144161 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
144122 AATAATAGCA
144132 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
144162 GCTAATGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:146711 original size:12 final size:12
Alignment explanation
Indices: 146694--146774 Score: 94
Period size: 12 Copynumber: 6.9 Consensus size: 12
146684 TAATTATAAA
*
146694 ACACATACACAT
1 ACACATGCACAT
146706 ACACATGCACAT
1 ACACATGCACAT
*
146718 GCACATGCACAT
1 ACACATGCACAT
*
146730 GCACATGCACAT
1 ACACATGCACAT
*
146742 GCACATGCACAT
1 ACACATGCACAT
*
146754 GCACATG--CAT
1 ACACATGCACAT
*
146764 ACACATACACA
1 ACACATGCACA
146775 CATACATACA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
10 8 0.13
12 55 0.87
ACGTcount: A:0.40, C:0.33, G:0.11, T:0.16
Consensus pattern (12 bp):
ACACATGCACAT
Found at i:146774 original size:6 final size:6
Alignment explanation
Indices: 146695--146762 Score: 118
Period size: 6 Copynumber: 11.3 Consensus size: 6
146685 AATTATAAAA
* *
146695 CACATA CACATA CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
146743 CACATG CACATG CACATG CA
1 CACATG CACATG CACATG CA
146763 TACACATACA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.37, C:0.34, G:0.13, T:0.16
Consensus pattern (6 bp):
CACATG
Found at i:148585 original size:12 final size:12
Alignment explanation
Indices: 148541--148585 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
148531 AAATCAAAAT
148541 AGAATTCAGAAC
1 AGAATTCAGAAC
* *
148553 AGAATCCAGATC
1 AGAATTCAGAAC
*
148565 AGAAATCAGAAC
1 AGAATTCAGAAC
148577 AGAATTCAG
1 AGAATTCAG
148586 GTCATGTATC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.49, C:0.18, G:0.18, T:0.16
Consensus pattern (12 bp):
AGAATTCAGAAC
Found at i:151110 original size:18 final size:18
Alignment explanation
Indices: 151084--151129 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
151074 CAACGGTCAA
* * *
151084 CGGGCCGGGTCAATGGGT
1 CGGGTCGGGTAAACGGGT
151102 CGGGTCGGGTAAACGGGT
1 CGGGTCGGGTAAACGGGT
151120 CGGGTCGGGT
1 CGGGTCGGGT
151130 TGAAATCGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.11, C:0.20, G:0.52, T:0.17
Consensus pattern (18 bp):
CGGGTCGGGTAAACGGGT
Found at i:155335 original size:25 final size:25
Alignment explanation
Indices: 155286--155336 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
155276 AATATTTTTG
* *
155286 ATATATTTTATCATAGTTTAAATTA
1 ATATATTTTATCATACTATAAATTA
155311 ATATATTTTAT-ATACTATAACATTA
1 ATATATTTTATCATACTATAA-ATTA
155336 A
1 A
155337 AAAATTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (25 bp):
ATATATTTTATCATACTATAAATTA
Found at i:156133 original size:29 final size:29
Alignment explanation
Indices: 156090--156184 Score: 154
Period size: 29 Copynumber: 3.2 Consensus size: 29
156080 GGAACTGGTT
156090 GGGTACCCGGCTAAAAGCGGTTCCAATACC
1 GGGTA-CCGGCTAAAAGCGGTTCCAATACC
156120 GGGTACCGGCTAAAAGCGGTTCCAATACC
1 GGGTACCGGCTAAAAGCGGTTCCAATACC
* *
156149 GGGTACCGGCTAAAAACAGTTCCAATACC
1 GGGTACCGGCTAAAAGCGGTTCCAATACC
*
156178 AGGTACC
1 GGGTACC
156185 CTGAAACTGG
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
29 57 0.92
30 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.25, T:0.17
Consensus pattern (29 bp):
GGGTACCGGCTAAAAGCGGTTCCAATACC
Found at i:157527 original size:13 final size:14
Alignment explanation
Indices: 157498--157527 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
157488 CACCAACACC
157498 TAAACCCTAAGTCT
1 TAAACCCTAAGTCT
157512 TAAACCCTAA-TCT
1 TAAACCCTAAGTCT
157525 TAA
1 TAA
157528 CTACTAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.40, C:0.27, G:0.03, T:0.30
Consensus pattern (14 bp):
TAAACCCTAAGTCT
Found at i:158313 original size:3 final size:3
Alignment explanation
Indices: 158298--158395 Score: 88
Period size: 3 Copynumber: 32.3 Consensus size: 3
158288 TCCCTACACC
* * * * *
158298 ATT ATT TTT ATT ATT ATT ATT ATA AAT ATT AAT GTT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
158346 ATT AAT ATT AAT GTT ATT ATT ATT AAT AAT ATT ATT ATTT ATT TTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT
158392 ATT A
1 ATT A
158396 ATTGGTTTTT
Statistics
Matches: 74, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
3 71 0.96
4 3 0.04
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:158335 original size:27 final size:27
Alignment explanation
Indices: 158305--158370 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 27
158295 ACCATTATTT
158305 TTATTATTATTATTATAAATATTAATG
1 TTATTATTATTATTATAAATATTAATG
*
158332 TTATTATTATTATTATTAATATTAATG
1 TTATTATTATTATTATAAATATTAATG
158359 TTATTATTATTA
1 TTATTATTATTA
158371 ATAATATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (27 bp):
TTATTATTATTATTATAAATATTAATG
Found at i:158337 original size:21 final size:21
Alignment explanation
Indices: 158309--158384 Score: 98
Period size: 21 Copynumber: 3.6 Consensus size: 21
158299 TTATTTTTAT
* *
158309 TATTATTATTATAAATATTAA
1 TATTATTATTATTATTATTAA
*
158330 TGTTATTATTATTATTATTAA
1 TATTATTATTATTATTATTAA
* *
158351 TATTAATGTTATTATTATTAA
1 TATTATTATTATTATTATTAA
*
158372 TAATATTATTATT
1 TATTATTATTATT
158385 TATTTTTATT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (21 bp):
TATTATTATTATTATTATTAA
Found at i:158381 original size:27 final size:26
Alignment explanation
Indices: 158308--158397 Score: 107
Period size: 27 Copynumber: 3.5 Consensus size: 26
158298 ATTATTTTTA
158308 TTATTATTATT-ATAA-ATATTAATG
1 TTATTATTATTAATAATATATTAATG
* *
158332 TTATTATTATTATTATTAATATTAATG
1 TTATTATTATTAATAAT-ATATTAATG
158359 TTATTATTATTAATAATATTATT-AT-
1 TTATTATTATTAATAATA-TATTAATG
*
158384 TTATTTTTATTAAT
1 TTATTATTATTAAT
158398 TGGTTTTTGG
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
24 11 0.19
25 15 0.26
26 3 0.05
27 28 0.49
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (26 bp):
TTATTATTATTAATAATATATTAATG
Found at i:160692 original size:130 final size:131
Alignment explanation
Indices: 160433--160797 Score: 527
Period size: 130 Copynumber: 2.8 Consensus size: 131
160423 CTCAATATTG
* * * *
160433 AAAATAGTAATATCT-TTTCATTTCGGTTGGAGTAATAAATGATTGTTTTAAGGCATGAGATGTC
1 AAAATAGTGATATCTCTTT-ATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAGAGGTC
* * * * *
160497 ATTTATTCTCGATTGGAAATAATTAGATATTACCGTTTTCTCTCGAATCAATATTGATTTTTAAG
65 ATTTATTCTCGATTGGAAATAATTAGATATTATCATTTTCACTCGAATCAATATTGAATCTTAAG
160562 AC
130 AC
* *
160564 AAAATAGTGATATCTCTTTATTT-GATTGGAGAAATGAATGATTGCTTTAAGGCATGAGAGGTCA
1 AAAATAGTGATATCTCTTTATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAGAGGTCA
* *
160628 TTTATTCTCGATTGGAAATCATTAGATATTATCATTTTCACTTGAATCAATATTGAATCTTAAGA
66 TTTATTCTCGATTGGAAATAATTAGATATTATCATTTTCACTCGAATCAATATTGAATCTTAAGA
*
160693 T
131 C
* * * *
160694 GAAATAGTGATATATCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAGAGATCA
1 AAAATAGTGATATCTCTTTATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAGAGGTCA
* *
160759 TTTATTATCGATTGGAAATAATTAGATATTATTATTTTC
66 TTTATTCTCGATTGGAAATAATTAGATATTATCATTTTC
160798 TCTCTTAGAA
Statistics
Matches: 209, Mismatches: 23, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
130 114 0.55
131 92 0.44
132 3 0.01
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (131 bp):
AAAATAGTGATATCTCTTTATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAGAGGTCA
TTTATTCTCGATTGGAAATAATTAGATATTATCATTTTCACTCGAATCAATATTGAATCTTAAGA
C
Found at i:164507 original size:23 final size:24
Alignment explanation
Indices: 164481--164531 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
164471 TTTAAGTTTT
164481 GGTCAAAAGAGGTCAACGGTC-AC
1 GGTCAAAAGAGGTCAACGGTCAAC
* *
164504 GGTCAAAGGAGGTCAATGGTCAAC
1 GGTCAAAAGAGGTCAACGGTCAAC
164528 GGTC
1 GGTC
164532 GGGTCGGGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.31, C:0.20, G:0.33, T:0.16
Consensus pattern (24 bp):
GGTCAAAAGAGGTCAACGGTCAAC
Done.