Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005754.1 Hibiscus syriacus cultivar Beakdansim tig00013462_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84718

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10202--10254
2
27.0
2
96
3
99
50
0
0
49
1.00
18302--18326
12
2.1
12
100
0
50
52
32
16
0
1.44
18520--18549
2
15.0
2
100
0
60
50
0
0
50
1.00
19829--19859
4
7.8
4
92
0
53
25
0
25
48
1.52
22894--23016
42
2.9
42
72
9
124
22
20
24
32
1.98
22895--23109
84
2.6
83
81
4
227
23
21
22
32
1.98
28941--28994
23
2.3
23
74
0
63
44
3
1
50
1.30
30234--30313
40
2.0
40
92
4
135
27
15
25
32
1.95
33499--33532
11
3.2
10
88
12
50
55
20
11
11
1.67
33516--33595
23
3.4
23
76
10
81
43
20
15
21
1.87
33545--33606
24
2.4
27
79
15
69
48
17
11
22
1.79
35984--36046
25
2.5
25
79
5
65
60
0
0
39
0.97
35972--36056
34
2.5
34
94
0
143
57
0
0
42
0.98
38372--38396
2
12.5
2
100
0
50
48
0
0
52
1.00
39393--39424
15
2.1
15
100
0
64
40
0
53
6
1.26
39401--39448
21
2.3
21
81
0
60
39
0
54
6
1.26
39797--39829
16
2.1
16
100
0
66
24
18
6
51
1.68
40992--41038
22
2.1
22
96
0
85
19
14
17
48
1.81
48701--48893
99
2.0
97
94
2
341
29
12
29
28
1.93
53233--53688
240
1.9
240
87
2
675
29
23
15
31
1.95
67985--68048
33
1.9
33
93
0
110
35
21
20
21
1.96
69786--69873
39
2.3
39
77
15
92
47
2
1
48
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70024--70061
20
1.9
20
88
0
58
26
26
5
42
1.76
77996--78029
13
2.6
13
95
0
59
17
5
2
73
1.16

Tables:   1

The End!