genome.fa.s5756.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005756.1 Hibiscus syriacus cultivar Beakdansim tig00013475_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  172372

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7592--7639	25	1.9	25	95	0	87	45	0	2	52	1.12
9723--9768	20	2.3	20	82	17	53	32	0	28	39	1.57
11161--11350	59	3.3	58	82	10	248	27	15	25	30	1.96
14253--14294	18	2.3	18	91	0	66	21	16	21	40	1.91
26259--26293	16	2.1	17	89	5	54	34	5	2	57	1.37
34729--34762	16	2.1	16	89	10	52	17	2	2	76	1.04
36862--36912	20	2.5	21	90	3	70	56	5	19	17	1.61
36869--36912	20	2.2	20	95	0	79	56	6	20	15	1.62
37871--37895	4	6.2	4	100	0	50	76	0	0	24	0.80
39044--39080	2	19.0	2	94	5	67	48	0	0	51	1.00
53698--53736	14	2.8	14	81	14	53	46	2	0	51	1.14
53870--53943	28	2.7	28	77	8	80	63	0	2	33	1.09
55147--55218	22	3.3	22	88	5	110	27	20	25	26	1.99
55155--55217	21	3.0	21	92	2	99	23	23	26	25	2.00
56594--56754	64	2.5	63	83	8	182	27	20	18	33	1.96
57383--57433	21	2.4	21	93	6	86	37	19	3	39	1.70
59929--60000	22	3.3	22	88	5	110	27	20	25	26	1.99
59937--59999	21	3.0	21	92	2	99	23	23	26	25	2.00
61375--61535	64	2.5	63	84	8	191	27	21	18	33	1.96
68984--69014	2	15.5	2	100	0	62	51	0	0	48	1.00
69014--69041	2	14.0	2	100	0	56	50	0	50	0	1.00
75005--75096	40	2.3	40	86	3	123	36	14	22	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75186--75283	18	5.3	20	64	26	63	44	3	17	34	1.64
75183--75290	36	3.0	36	98	0	207	46	2	17	33	1.63
77432--77491	20	3.0	20	71	26	56	53	1	0	45	1.10
89613--89649	3	12.3	3	100	0	74	0	67	0	32	0.91
89679--89747	3	23.3	3	97	2	131	0	66	0	33	0.92
91280--91357	38	2.0	40	87	9	117	38	2	26	32	1.70
94692--94770	20	3.8	20	76	17	70	22	34	20	22	1.97
94790--94832	20	2.2	20	91	0	68	16	25	25	32	1.96
99348--99630	68	4.2	66	82	7	291	25	24	21	28	1.99
99348--99641	67	4.3	65	79	11	252	24	23	22	29	1.99
99280--99641	70	5.3	68	77	11	278	25	23	21	29	1.99
101487--101542	25	2.3	25	76	20	64	71	5	12	10	1.29
102150--102192	18	2.5	17	85	7	61	67	2	4	25	1.22
102548--102652	37	2.8	37	85	0	138	29	14	15	40	1.86
102585--102648	21	3.3	21	62	20	57	28	14	15	42	1.86
103195--103825	105	6.0	105	91	2	891	21	18	26	33	1.96
104025--104100	36	2.1	36	90	0	116	40	15	21	22	1.90
104000--104318	105	3.1	104	93	2	527	36	12	20	30	1.89
104435--104548	36	3.2	36	73	2	113	43	14	16	25	1.85
104389--104564	72	2.4	74	84	7	216	42	13	18	26	1.87
105705--106241	183	2.9	183	96	0	995	30	21	20	26	1.98
110186--110242	18	3.2	17	78	9	60	71	3	10	14	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110307--110338	2	16.0	2	93	0	55	53	0	0	46	1.00
110326--110401	38	2.1	38	83	14	97	55	7	5	31	1.51
110804--110829	13	2.0	13	100	0	52	69	0	7	23	1.14
110851--110893	18	2.5	17	85	7	61	67	2	4	25	1.22
111250--111354	37	2.8	37	88	0	138	31	12	13	42	1.81
111287--111350	19	3.3	21	64	20	57	29	10	14	45	1.78
117187--117280	20	4.7	20	80	7	100	34	24	18	23	1.96
117799--117879	19	4.5	19	71	16	64	48	23	17	11	1.79
117875--118045	39	4.6	38	76	13	165	12	21	21	45	1.85
117875--118045	19	9.1	19	80	12	165	12	21	21	45	1.85
120854--120878	12	2.1	12	100	0	50	0	28	0	72	0.86
121988--122061	19	4.5	16	83	16	66	13	20	18	47	1.82
121984--122051	19	3.8	19	87	12	101	13	22	17	47	1.82
121965--122079	52	2.2	52	82	0	131	19	21	20	38	1.94
122168--122204	14	2.6	14	86	0	56	48	21	0	29	1.50
124072--124138	19	3.5	19	79	4	80	35	23	25	14	1.94
124127--124166	14	2.9	14	100	0	80	50	27	15	7	1.70
124200--124257	14	3.9	14	79	16	71	10	17	24	48	1.78
124187--124274	32	2.7	33	91	5	142	12	18	20	48	1.80
124261--124305	20	2.2	20	88	0	63	15	22	20	42	1.89
124268--124313	20	2.3	20	92	0	74	15	19	26	39	1.91
124795--124839	18	2.5	18	88	0	72	13	15	44	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126155--126192	20	1.9	20	88	0	58	50	21	15	13	1.78
126456--126499	22	2.0	22	95	0	79	18	15	45	20	1.85
126667--126781	20	5.7	20	78	5	97	24	16	22	36	1.94
126770--126862	20	4.5	21	78	4	100	17	24	18	39	1.91
126709--126843	41	3.3	41	84	6	150	20	20	20	39	1.93
126732--126862	20	6.4	20	74	9	97	19	21	18	41	1.91
126770--126862	41	2.3	41	100	0	186	17	24	18	39	1.91
130029--130103	39	1.9	39	91	0	123	36	25	13	25	1.92
130727--130759	16	2.0	17	88	5	50	33	3	0	63	1.10
134246--134306	21	2.9	21	85	4	70	13	9	3	73	1.20
134255--134307	21	2.5	21	87	6	72	16	9	3	69	1.30
143147--143180	2	17.0	2	100	0	68	50	0	0	50	1.00
144287--144324	18	2.1	19	85	9	53	50	0	0	50	1.00
145894--145933	21	1.9	21	94	0	71	7	32	37	22	1.82
153233--153585	177	2.0	175	93	1	607	33	18	20	27	1.96
160019--160066	23	2.1	23	84	0	60	35	10	18	35	1.85
160448--160499	23	2.3	22	90	6	77	44	19	1	34	1.62
160458--160520	23	2.7	23	90	0	90	38	19	6	36	1.77
160921--161005	38	2.2	37	91	4	134	17	14	21	47	1.83
161261--161297	18	2.1	18	89	0	56	51	10	5	32	1.60
161534--161584	25	2.0	25	92	0	84	39	19	7	33	1.81
161860--161919	23	2.6	23	89	0	84	38	18	6	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162229--162267	20	2.0	20	89	0	60	48	10	15	25	1.76
162279--162341	23	2.7	23	90	0	90	38	19	6	36	1.77
161616--162439	422	1.9	422	95	3	1498	39	12	8	39	1.74
166680--166772	3	31.0	3	76	0	87	23	34	6	35	1.81
166680--166787	12	9.0	12	82	0	90	22	34	7	36	1.82
166680--166784	18	5.8	18	78	0	102	22	34	7	35	1.83
166696--166784	42	2.1	42	89	0	133	21	34	8	34	1.85
166720--166787	21	3.4	18	69	21	55	19	35	8	36	1.83
168222--170123	193	9.9	195	91	6	2958	31	15	16	36	1.90
172022--172081	29	2.1	29	87	0	84	21	50	1	26	1.59

Tables:   1

The End!