Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005758.1 Hibiscus syriacus cultivar Beakdansim tig00013479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 90565
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Found at i:9456 original size:36 final size:36
Alignment explanation
Indices: 9407--9510 Score: 165
Period size: 35 Copynumber: 2.9 Consensus size: 36
9397 AGCATTCGCT
9407 AAGAACCAGATTCGGATCCTGTTGCCTCTGAAAGCC
1 AAGAACCAGATTCGGATCCTGTTGCCTCTGAAAGCC
* *
9443 AAGAACCATATTCGGATCCTG-TACCTCTGAAAGCC
1 AAGAACCAGATTCGGATCCTGTTGCCTCTGAAAGCC
* *
9478 AAGAACCAGATTCAGATCCTGTTGCATCTGAAA
1 AAGAACCAGATTCGGATCCTGTTGCCTCTGAAA
9511 CAGAAGGTAA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
35 32 0.52
36 29 0.48
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (36 bp):
AAGAACCAGATTCGGATCCTGTTGCCTCTGAAAGCC
Found at i:11433 original size:14 final size:14
Alignment explanation
Indices: 11414--11456 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
11404 TAACAGACTT
11414 GTCTGTTTTCTACA
1 GTCTGTTTTCTACA
11428 GTCTGTTTTCTACA
1 GTCTGTTTTCTACA
*
11442 ATCTGTTTTCTACA
1 GTCTGTTTTCTACA
11456 G
1 G
11457 CTACAAGCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.16, C:0.21, G:0.14, T:0.49
Consensus pattern (14 bp):
GTCTGTTTTCTACA
Found at i:13683 original size:17 final size:16
Alignment explanation
Indices: 13652--13682 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13642 GTAACCGGTT
13652 TCGG-TTTTTTAAAAA
1 TCGGTTTTTTTAAAAA
13667 TCGGTTTTTTTAAAAA
1 TCGGTTTTTTTAAAAA
13683 ACCGGTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.48
Consensus pattern (16 bp):
TCGGTTTTTTTAAAAA
Found at i:13688 original size:17 final size:16
Alignment explanation
Indices: 13656--13689 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
13646 CCGGTTTCGG
*
13656 TTTTTTAAAAATCGGT
1 TTTTTTAAAAACCGGT
13672 TTTTTTAAAAAACCGGT
1 TTTTTT-AAAAACCGGT
13689 T
1 T
13690 ATAAAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (16 bp):
TTTTTTAAAAACCGGT
Found at i:13797 original size:33 final size:33
Alignment explanation
Indices: 13750--13840 Score: 139
Period size: 33 Copynumber: 2.8 Consensus size: 33
13740 ACAAAGTTTA
* * *
13750 CGAT-AATTGAAATACTTAAATACTTCCAAGTT
1 CGATAAATTCAAATACTTAAAAACTTCCAAATT
*
13782 TGATAAATTCAAATACTTAAAAACTTCCAAATT
1 CGATAAATTCAAATACTTAAAAACTTCCAAATT
13815 CGATAAATTCAAATACTTAAAAACTT
1 CGATAAATTCAAATACTTAAAAACTT
13841 TAAGTTCGAT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
32 3 0.06
33 50 0.94
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.33
Consensus pattern (33 bp):
CGATAAATTCAAATACTTAAAAACTTCCAAATT
Found at i:13871 original size:21 final size:21
Alignment explanation
Indices: 13847--13888 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
13837 ACTTTAAGTT
13847 CGATAATTGAAACAAAATTTA
1 CGATAATTGAAACAAAATTTA
*
13868 CGATAATTGAAATAAAATTTA
1 CGATAATTGAAACAAAATTTA
13889 AAAATAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (21 bp):
CGATAATTGAAACAAAATTTA
Found at i:31012 original size:15 final size:15
Alignment explanation
Indices: 30992--31154 Score: 211
Period size: 15 Copynumber: 10.5 Consensus size: 15
30982 TAATAAGGTT
30992 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
31007 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
31022 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
31037 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
31052 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
31067 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
31082 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
31097 AATTATTATATAATATGGATTG
1 ATTTATT-T-TAA-A---A-TA
31119 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
31134 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
31148 ATTTATT
1 ATTTATT
31155 AGTATGGATT
Statistics
Matches: 133, Mismatches: 8, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
14 12 0.09
15 102 0.77
16 2 0.02
17 3 0.02
18 1 0.01
19 1 0.01
20 3 0.02
21 2 0.02
22 7 0.05
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:31046 original size:45 final size:45
Alignment explanation
Indices: 30992--31155 Score: 240
Period size: 45 Copynumber: 3.5 Consensus size: 45
30982 TAATAAGGTT
30992 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATA
*
31037 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATA
*
31082 ATTTATTTTAAAATAAATTATTATATAATATGGATTGATTTATTTTAAAATA
1 ATTTATTTTAAAATAATTTATTATA-AA-AT--A---ATTTATTTTAAAATA
31134 ATTTATTTT-AAATAATTTATTA
1 ATTTATTTTAAAATAATTTATTA
31156 GTATGGATTG
Statistics
Matches: 108, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
45 68 0.63
46 2 0.02
47 2 0.02
49 1 0.01
51 12 0.11
52 23 0.21
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (45 bp):
ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATA
Found at i:31131 original size:52 final size:47
Alignment explanation
Indices: 30992--31180 Score: 201
Period size: 45 Copynumber: 4.0 Consensus size: 47
30982 TAATAAGGTT
* * *
30992 ATTTATTTTAAAATAATTTATT-ATA--AAATAATTTATTTTAAAATA
1 ATTTATTTT-AAATAATTTATTAATATGGATTGATTTATTTTAAAATA
* * * *
31037 ATTTATTTTAAAATAATTTATT-ATA--AAATAATTTATTATAAAATA
1 ATTTATTTT-AAATAATTTATTAATATGGATTGATTTATTTTAAAATA
31082 ATTTATTTTAAAATAAATTATTATATAATATGGATTGATTTATTTTAAAATA
1 ATTTATTTT-AAAT-AA-T-TTAT-TAATATGGATTGATTTATTTTAAAATA
*
31134 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATA
1 ATTTATTTTAAATAATTTATTAATATGGATTGATTTATTTTAAAATA
31181 TGGATTGATT
Statistics
Matches: 131, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
45 58 0.44
46 2 0.02
47 27 0.21
48 8 0.06
49 2 0.02
50 5 0.04
51 4 0.03
52 25 0.19
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.51
Consensus pattern (47 bp):
ATTTATTTTAAATAATTTATTAATATGGATTGATTTATTTTAAAATA
Found at i:31171 original size:18 final size:18
Alignment explanation
Indices: 31148--31195 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 18
31138 ATTTTAAATA
*
31148 ATTTATTAGTATGGATTG
1 ATTTATTAATATGGATTG
31166 ATTTATTTTAAAATATGGATTG
1 ATTTA--TT--AATATGGATTG
31188 ATTTATTA
1 ATTTATTA
31196 TTGCAGTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
18 6 0.24
20 4 0.16
22 15 0.60
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (18 bp):
ATTTATTAATATGGATTG
Found at i:31250 original size:32 final size:32
Alignment explanation
Indices: 31204--31907 Score: 551
Period size: 32 Copynumber: 24.7 Consensus size: 32
31194 TATTGCAGTT
* *
31204 GTATAGATTGATTTATTTTAAATAATATATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
31236 GTATGGATTGATTTA-CTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
31259 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
31290 GTATGGATTGATTTA-TTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
31313 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
31344 GTATGGATTGATATATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
31376 GTATGGATTGATTTA-GTT--AT--TTTA-AA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
31402 ATATGGATTGATTTA--TT--AT--TGTAGTT-
1 GTATGGATTGATTTATTTTAAATAATTTA-TTA
31428 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
31460 GTATGAATTGATTTA-CTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
31483 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
31514 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
31546 GTATGGATTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
31578 GTATGGATTGATTTA-TTT--AT--TTTA-AA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
31604 ATATGGATTGATTTA--TT--AT--TGTAGTT-
1 GTATGGATTGATTTATTTTAAATAATTTA-TTA
31630 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
31662 ATATGGATTGATTTA-TTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
31685 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
31716 GTATGGATTGATTTA--TT--ATAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
31739 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
31770 GTATGGATTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* * *
31802 GTATGGATTGATTGA-TTT--GT--TTTA-AA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
31828 ATATGGATTGATTTA--TT--AT--TGTAGTT-
1 GTATGGATTGATTTATTTTAAATAATTTA-TTA
*
31854 GTATGGATTAATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
31886 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
31908 ATATGGATTG
Statistics
Matches: 554, Mismatches: 41, Indels: 154
0.74 0.05 0.21
Matches are distributed among these distances:
22 69 0.12
23 15 0.03
24 2 0.00
25 25 0.05
26 98 0.18
27 12 0.02
28 22 0.04
29 10 0.02
30 8 0.01
31 29 0.05
32 264 0.48
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:31265 original size:22 final size:22
Alignment explanation
Indices: 31237--31279 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
31227 AATATATTAG
31237 TATGGATTGATTTACTTTAAAA
1 TATGGATTGATTTACTTTAAAA
*
31259 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTACTTTAAA
31280 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (22 bp):
TATGGATTGATTTACTTTAAAA
Found at i:31276 original size:54 final size:54
Alignment explanation
Indices: 31209--31620 Score: 441
Period size: 54 Copynumber: 7.2 Consensus size: 54
31199 CAGTTGTATA
* *
31209 GATTGATTTATTTTAAATAATATATTAGTATGGATTGATTTACTTTAAAATATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
31263 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
*
31317 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATATATTTTAAATAATTTATTTG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AA-AA--TA--TG
* * * ** * * * ***
31377 TATGGATTGA-TTTAGTTATTTTA-AAATATGGATTGATTTATTATTGTAGTTGTATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-T-TT-TA-AAATATG
* *
31433 GATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTACTTTAAAATATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
31487 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTT---TAA---A--A-TATG
*
31551 GATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTATTTTAAAATATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTG----ATTTATTTTAAAATATG
31609 GATTGATTTATT
1 GATTGATTTATT
31621 ATTGTAGTTG
Statistics
Matches: 301, Mismatches: 31, Indels: 48
0.79 0.08 0.13
Matches are distributed among these distances:
54 142 0.47
55 6 0.02
56 13 0.04
57 10 0.03
58 51 0.17
59 12 0.04
60 12 0.04
61 3 0.01
63 1 0.00
64 43 0.14
67 3 0.01
68 5 0.02
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.52
Consensus pattern (54 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
Found at i:31316 original size:22 final size:22
Alignment explanation
Indices: 31291--31333 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
31281 AATTTATTAG
31291 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
31313 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
31334 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:31397 original size:26 final size:25
Alignment explanation
Indices: 31368--31444 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 25
31358 ATTTTAAATA
31368 ATTTATTTGTATGGATTGATTTAGTT
1 ATTTATTTGTATGGATTGATTTA-TT
***
31394 ATTT-TAAAATATGGATTGATTTATT
1 ATTTAT-TTGTATGGATTGATTTATT
*
31419 ATTGTAGTTGTATGGATTGATTTATT
1 ATT-TATTTGTATGGATTGATTTATT
31445 TTAAATAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
25 6 0.15
26 35 0.85
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (25 bp):
ATTTATTTGTATGGATTGATTTATT
Found at i:31415 original size:224 final size:225
Alignment explanation
Indices: 31137--31595 Score: 739
Period size: 224 Copynumber: 2.0 Consensus size: 225
31127 TAAAATAATT
31137 TATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGCAG
1 TATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGCAG
*
31202 TTGTATAGATTGATTTATTTTAAATAATATATTAGTATGGATTGATTTACTTTAAAATATGGATT
66 TTGTATAGATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTACTTTAAAATATGGATT
31267 GATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTT-TAA-A-A-TATGGATTGATTTA
131 GATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTATAATATAGTATGGATTGATTTA
31327 TTTTAAATAATTTATTAGTATGGATTGATA
196 TTTTAAATAATTTATTAGTATGGATTGATA
*
31357 TATTTTAAATAATTTATTTGTATGGATTGATTTAGTTATTTTAAAATATGGATTGATTTATTATT
1 TATTTTAAATAATTTATTAGTATGGATTGA--T--TTATTTTAAAATATGGATTGATTTATTATT
* * *
31422 GTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTACTTTAAAATATG
62 GCAGTTGTATAGATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTACTTTAAAATATG
31487 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGG
127 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT--ATAA--TA-TAGTATGG
* *
31552 ATTGATTTATTTTAAATAATTTATTTGTATGGATTGATT
187 ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATA
31591 TATTT
1 TATTT
31596 ATTTTAAAAT
Statistics
Matches: 218, Mismatches: 7, Indels: 14
0.91 0.03 0.06
Matches are distributed among these distances:
220 29 0.13
222 1 0.00
224 133 0.61
225 3 0.01
228 3 0.01
231 1 0.00
233 1 0.00
234 47 0.22
ACGTcount: A:0.34, C:0.01, G:0.14, T:0.52
Consensus pattern (225 bp):
TATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGCAG
TTGTATAGATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTACTTTAAAATATGGATT
GATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTATAATATAGTATGGATTGATTTA
TTTTAAATAATTTATTAGTATGGATTGATA
Found at i:31458 original size:170 final size:170
Alignment explanation
Indices: 31259--31925 Score: 713
Period size: 170 Copynumber: 3.9 Consensus size: 170
31249 TACTTTAAAA
31259 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
* *
31324 TTATTTTAAATAATTTA-TTAGTATGGATTGATATATTTTAAATAATTTATTTGTATGGATTGAT
66 TTATTTTAAATAATTTATTTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
*
31388 TTAGTTATTTTAAAATATGGATTGATTTA-TTATTGTAGTTG
131 TTA-TTATTTTAAAATATGGATTGATTTATTTATTTTA-TTG
* *
31429 TATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTACTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
31494 TTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
66 TTATTTTAAATAATTTATTTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
*** ***
31558 TTATTTTAAATAATTTATTTGTATGGATTGATTTATTTATTTTAAAA
131 TTA--TT--AT--TTTA-AAATATGGATTGATTTATTTATTTTATTG
* *
31605 TATGGATTGATTTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTTT-AAATA---ATTTA
1 TATGGATTGATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTTAAAATATGGATTGA
* * ** * * *
31659 TTAATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGAT
65 TTTATTTTAAATAATTTA-TTT--AGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGAT
31724 TGATTTATTA---TAAAATATGGATTGATTTATTTTAAATAATTTATTAG
127 TGATTTATTATTTTAAAATATGGATTGATTTA-TTT--AT--TTTATT-G
* *
31771 TATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTGATTTGTTTTAAAATATGGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTAT-G---GATTGATTTATTTTAAAATATGGAT
* * *
31836 TGATTTA--TT--AT--TGTAGTT-GTATGGATTAATTTATTTTAAATAATTTATTAGTATGGAT
62 TGATTTATTTTAAATAATTTATTTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGAT
31894 TGA--T-TTATTTTAAAATATGGATTGATTTATTT
127 TGATTTATTATTTTAAAATATGGATTGATTTATTT
31926 TAAATAATTT
Statistics
Matches: 422, Mismatches: 39, Indels: 73
0.79 0.07 0.14
Matches are distributed among these distances:
160 14 0.03
161 5 0.01
163 2 0.00
165 4 0.01
166 31 0.07
167 3 0.01
168 7 0.02
169 8 0.02
170 257 0.61
171 6 0.01
172 9 0.02
173 5 0.01
174 5 0.01
175 4 0.01
176 42 0.10
177 12 0.03
178 1 0.00
180 7 0.02
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (170 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
TTATTTTAAATAATTTATTTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
TTATTATTTTAAAATATGGATTGATTTATTTATTTTATTG
Found at i:31472 original size:202 final size:202
Alignment explanation
Indices: 31259--31787 Score: 751
Period size: 202 Copynumber: 2.7 Consensus size: 202
31249 TACTTTAAAA
** ** *
31259 TATGGATTGATTTATTTT-AAATAATTTATTAGTATGGA-TTGATTTATTTTA-AAATATGGATT
1 TATGGATTGATTTATTTTAAAAT-ATGGATT-G-ATGGATTTGAAATAATTTATAAATATGGATT
*
31321 GATTTATTTTAAATAATTTATTAGTATGGATTGATATATTTTAAATAATTTATTTGTATGGATTG
63 GATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTG
*
31386 ATTTAGTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAAT
128 ATTTATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAAT
31451 AATTTATTAG
193 AATTTATTAG
* * ** * * *
31461 TATGAATTGATTTACTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
1 TATGGATTGATTTATTTTAAAATATGGATTGATGGATTTGAAATAATTTATAAATATGGATTGAT
31526 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATT
66 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATT
31591 TATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAAT
131 TATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAAT
*
31656 TTATTAA
196 TTATTAG
** * * *
31663 TATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
1 TATGGATTGATTTATTTTAAAATATGGATTGATGGATTTGAAATAATTTATAAATATGGATTGAT
*
31728 TTA--TT--ATAA---A--A-TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATT
66 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATT
31783 TATTT
131 TATTT
31788 TAAATAATTT
Statistics
Matches: 306, Mismatches: 18, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
192 48 0.16
193 1 0.00
195 1 0.00
198 4 0.01
200 5 0.02
201 10 0.03
202 233 0.76
203 4 0.01
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.53
Consensus pattern (202 bp):
TATGGATTGATTTATTTTAAAATATGGATTGATGGATTTGAAATAATTTATAAATATGGATTGAT
TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATT
TATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAAT
TTATTAG
Found at i:31486 original size:22 final size:22
Alignment explanation
Indices: 31461--31503 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
31451 AATTTATTAG
31461 TATGAATTGATTTACTTTAAAA
1 TATGAATTGATTTACTTTAAAA
* *
31483 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTACTTTAAA
31504 TAATTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.02, G:0.12, T:0.49
Consensus pattern (22 bp):
TATGAATTGATTTACTTTAAAA
Found at i:31529 original size:18 final size:18
Alignment explanation
Indices: 31506--31562 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
31496 ATTTTAAATA
31506 ATTTATTAGTATGGATTG
1 ATTTATTAGTATGGATTG
* * *
31524 ATTTATT--T-T-AAATA
1 ATTTATTAGTATGGATTG
31538 ATTTATTAGTATGGATTG
1 ATTTATTAGTATGGATTG
31556 ATTTATT
1 ATTTATT
31563 TTAAATAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
14 9 0.31
15 1 0.03
16 2 0.07
17 1 0.03
18 16 0.55
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (18 bp):
ATTTATTAGTATGGATTG
Found at i:31686 original size:22 final size:22
Alignment explanation
Indices: 31661--31705 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
31651 ATAATTTATT
31661 AATATGGATTGATTTATTTTAA
1 AATATGGATTGATTTATTTTAA
31683 AATATGGATTGATTTATTTTAA
1 AATATGGATTGATTTATTTTAA
31705 A
1 A
31706 TAATTTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (22 bp):
AATATGGATTGATTTATTTTAA
Found at i:31702 original size:54 final size:54
Alignment explanation
Indices: 31631--31939 Score: 370
Period size: 54 Copynumber: 5.6 Consensus size: 54
31621 ATTGTAGTTG
*
31631 TATGGATTGATTTATTTTAAATAATTTATTAATATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
*
31685 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
31739 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
** ** * * ** * * ***
31792 TAATTTATTTGTATGGATTGATTGATTTGTTT-TAAAATATGGATTGATTTATTATTGTAGTTG
1 T-ATGGA-TTG-ATTTATT--TTAAATAATTTAT-TAGTATGGATTGATTTA-T-TT-TA-AAA
*
31855 TATGGATTAATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
31909 TATGGATTGATTTATTTTAAATAATTTATTA
1 TATGGATTGATTTATTTTAAATAATTTATTA
31940 TTGTAGTTGT
Statistics
Matches: 212, Mismatches: 31, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
53 4 0.02
54 134 0.63
55 5 0.02
56 7 0.03
57 2 0.01
58 44 0.21
59 2 0.01
60 7 0.03
61 3 0.01
62 3 0.01
63 1 0.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.52
Consensus pattern (54 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:31742 original size:22 final size:22
Alignment explanation
Indices: 31717--31759 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
31707 AATTTATTAG
31717 TATGGATTGATTTATTATAAAA
1 TATGGATTGATTTATTATAAAA
*
31739 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTATAAA
31760 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (22 bp):
TATGGATTGATTTATTATAAAA
Found at i:31819 original size:202 final size:197
Alignment explanation
Indices: 31313--31787 Score: 771
Period size: 202 Copynumber: 2.4 Consensus size: 197
31303 TATTTTAAAA
*
31313 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATATATTTTAAATAATTTATTTGT
1 TATGGATTGATTTA-TTT-AATAA--TA-TAGTATGGATTGATTTATTTTAAATAATTTATTTGT
*
31378 ATGGATTGATTTAGTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTA
61 ATGGATTGATTTATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTA
*
31443 TTTTAAATAATTTATTAGTATGAATTGATTTACTTTAAAATATGGATTGATTTATTTTAAATAAT
126 TTTTAAATAATTTATTAATATGAATTGATTTACTTTAAAATATGGATTGATTTATTTTAAATAAT
31508 TTATTAG
191 TTATTAG
31515 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGT
1 TATGGATTGATTTA-TTT-AATAA--TA-TAGTATGGATTGATTTATTTTAAATAATTTATTTGT
31580 ATGGATTGATTTATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTA
61 ATGGATTGATTTATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTA
* *
31645 TTTTAAATAATTTATTAATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAAT
126 TTTTAAATAATTTATTAATATGAATTGATTTACTTTAAAATATGGATTGATTTATTTTAAATAAT
31710 TTATTAG
191 TTATTAG
*
31717 TATGGATTGATTTA-TT-ATAA-A-A-TATGGATTGATTTATTTTAAATAATTTATTAGTATGGA
1 TATGGATTGATTTATTTAATAATATAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGGA
31777 TTGATTTATTT
66 TTGATTTATTT
31788 TAAATAATTT
Statistics
Matches: 267, Mismatches: 6, Indels: 10
0.94 0.02 0.04
Matches are distributed among these distances:
192 48 0.18
193 1 0.00
195 1 0.00
198 4 0.01
200 2 0.01
202 211 0.79
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (197 bp):
TATGGATTGATTTATTTAATAATATAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGGA
TTGATTTATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTA
AATAATTTATTAATATGAATTGATTTACTTTAAAATATGGATTGATTTATTTTAAATAATTTATT
AG
Found at i:31827 original size:224 final size:224
Alignment explanation
Indices: 31515--31939 Score: 814
Period size: 224 Copynumber: 1.9 Consensus size: 224
31505 AATTTATTAG
31515 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGT
* *
31580 ATGGATTGATTTATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTA
66 ATGGATTGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTAATTTA
31645 TTTTAAATAATTTATTAATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAAT
131 TTTTAAATAATTTATTAATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAAT
31710 TTATTAGTATGGATTGATTTATTATAAAA
196 TTATTAGTATGGATTGATTTATTATAAAA
31739 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGT
*
31804 ATGGATTGATTGATTTGTTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTAATTTA
66 ATGGATTGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTAATTTA
*
31869 TTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAAT
131 TTTTAAATAATTTATTAATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAAT
31934 TTATTA
196 TTATTA
31940 TTGTAGTTGT
Statistics
Matches: 197, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
224 197 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (224 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGT
ATGGATTGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTAATTTA
TTTTAAATAATTTATTAATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAAT
TTATTAGTATGGATTGATTTATTATAAAA
Found at i:31903 original size:22 final size:22
Alignment explanation
Indices: 31887--31929 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
31877 AATTTATTAG
31887 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
31909 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
31930 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:31989 original size:31 final size:31
Alignment explanation
Indices: 31954--32012 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
31944 AGTTGTATGG
* *
31954 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
31985 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
32013 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:33463 original size:15 final size:15
Alignment explanation
Indices: 33443--33476 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
33433 ATGGGAACTC
*
33443 TGGAATATATGGTGG
1 TGGAATATATGGCGG
*
33458 TGGAATGTATGGCGG
1 TGGAATATATGGCGG
33473 TGGA
1 TGGA
33477 CTCGGTGGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.03, G:0.44, T:0.29
Consensus pattern (15 bp):
TGGAATATATGGCGG
Found at i:33765 original size:33 final size:33
Alignment explanation
Indices: 33718--33798 Score: 117
Period size: 33 Copynumber: 2.4 Consensus size: 33
33708 TACCATTGAT
* **
33718 TTTCTCATTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTCTCTCGTTGCGATAGTCA
33751 TTTCGCATTGCGATTCTCTCGTTGCGATAGTCA
1 TTTCGCATTGCGATTCTCTCGTTGCGATAGTCA
*
33784 TTTCCGCGTTGCGAT
1 TTT-CGCATTGCGAT
33799 AGTCAATTCC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 33 0.77
34 10 0.23
ACGTcount: A:0.12, C:0.25, G:0.20, T:0.43
Consensus pattern (33 bp):
TTTCGCATTGCGATTCTCTCGTTGCGATAGTCA
Found at i:33795 original size:20 final size:20
Alignment explanation
Indices: 33770--33878 Score: 166
Period size: 20 Copynumber: 5.5 Consensus size: 20
33760 GCGATTCTCT
33770 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
33790 CGTTGCGATAGTCAATTCCG
1 CGTTGCGATAGTCATTTCCG
*
33810 CGTTGCGATAGTCAATTCCG
1 CGTTGCGATAGTCATTTCCG
*
33830 CGTTGCGATAGTCATTTCCA
1 CGTTGCGATAGTCATTTCCG
*
33850 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
33870 CGTTGCGAT
1 CGTTGCGAT
33879 TTCCGTGTTG
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
20 80 0.98
21 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:37227 original size:20 final size:20
Alignment explanation
Indices: 37204--37277 Score: 121
Period size: 20 Copynumber: 3.7 Consensus size: 20
37194 AAATTCAGTA
37204 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCTCG
37224 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCTCG
* * *
37244 TTGTGATAGTCAGATTCGCG
1 TTGCGATAGTCAGAATCTCG
37264 TTGCGATAGTCAGA
1 TTGCGATAGTCAGA
37278 TTCGCATTGC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCTCG
Found at i:37278 original size:20 final size:20
Alignment explanation
Indices: 37204--37290 Score: 120
Period size: 20 Copynumber: 4.3 Consensus size: 20
37194 AAATTCAGTA
*
37204 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
*
37224 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
* *
37244 TTGTGATAGTCAGATTCGCG
1 TTGCGATAGTCAGAATCGCG
* *
37264 TTGCGATAGTCAGATTCGCA
1 TTGCGATAGTCAGAATCGCG
37284 TTGCGAT
1 TTGCGAT
37291 TTATATATTC
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Found at i:37300 original size:20 final size:20
Alignment explanation
Indices: 37277--37410 Score: 178
Period size: 20 Copynumber: 6.7 Consensus size: 20
37267 CGATAGTCAG
**
37277 ATTCGCATTGCGATTTATAT
1 ATTCGCATTGCGATTTACGT
37297 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
37317 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
37337 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* * * * **
37357 AATCGAATTACGATTTTCCAA
1 ATTCGCATTGCGA-TTTACGT
*
37378 ATTCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
37398 ATTCGCATTGCGA
1 ATTCGCATTGCGA
37411 ATTAGGAAAA
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
20 84 0.87
21 13 0.13
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:37431 original size:41 final size:41
Alignment explanation
Indices: 37277--37432 Score: 181
Period size: 40 Copynumber: 3.9 Consensus size: 41
37267 CGATAGTCAG
* *
37277 ATTCGCATTGCGATTTA-TATATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGAAATTCGCATTGCGATTTACGT
*
37317 ATTCGCATTGCGATTTACG-TATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGAAATTCGCATTGCGATTTACGT
* * * * * *
37357 AATCGAATTACGATTTTCCAAATTCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACGAAATTCGCATTGCGATTTACGT
* * * *
37398 ATTCGCATTGCGAATTAGGAAAATCGCAATGCGAT
1 ATTCGCATTGCGATTTACGAAATTCGCATTGCGAT
37433 AGTGAGAATC
Statistics
Matches: 96, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
40 52 0.54
41 44 0.46
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (41 bp):
ATTCGCATTGCGATTTACGAAATTCGCATTGCGATTTACGT
Found at i:40737 original size:90 final size:89
Alignment explanation
Indices: 40617--40783 Score: 280
Period size: 90 Copynumber: 1.9 Consensus size: 89
40607 TAATCCCGAA
* *
40617 TATTTAATTTCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAATCCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAA-CCCTAATATGAT
40682 TAGGGTAACTTGGATATAAAATGAT
65 TAGGGTAACTTGGATATAAAATGAT
* *
40707 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCTTAATATGATT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAACCCTAATATGATT
*
40772 ATGGTAACTTGG
66 AGGGTAACTTGG
40784 TTCTAAAAGG
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
89 23 0.32
90 49 0.68
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (89 bp):
TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAACCCTAATATGATT
AGGGTAACTTGGATATAAAATGAT
Found at i:42198 original size:13 final size:13
Alignment explanation
Indices: 42180--42206 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
42170 CTCTTTTTGC
42180 TTATTTGACCAAG
1 TTATTTGACCAAG
42193 TTATTTGACCAAG
1 TTATTTGACCAAG
42206 T
1 T
42207 ATAAACATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTATTTGACCAAG
Found at i:43876 original size:45 final size:45
Alignment explanation
Indices: 43813--43915 Score: 170
Period size: 45 Copynumber: 2.3 Consensus size: 45
43803 ATTGTTCAGT
*
43813 GTGTATCGATGCACCTCTTAAAAATGGAAACATCGAATGTAATTA
1 GTGTATCGATGCACCTCTTAAAAATGGAAACATCGAAGGTAATTA
* * *
43858 GTGTATTGATGCACCTCTTAAAAATGGAAACATCGAAGGTGATTT
1 GTGTATCGATGCACCTCTTAAAAATGGAAACATCGAAGGTAATTA
43903 GTGTATCGATGCA
1 GTGTATCGATGCA
43916 TGGGTAGTGC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (45 bp):
GTGTATCGATGCACCTCTTAAAAATGGAAACATCGAAGGTAATTA
Found at i:45552 original size:34 final size:32
Alignment explanation
Indices: 45490--45559 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
45480 CCTTACAAAC
* *
45490 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGATAAACTAGAACCTT
*
45522 TCCCTAGCTTTTACACGGGATAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGATAAACTAGAACCTT
45556 TCCC
1 TCCC
45560 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGATAAACTAGAACCTT
Found at i:45801 original size:20 final size:22
Alignment explanation
Indices: 45776--45815 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
45766 AGTCGTATAT
45776 AGCCG-TTGGGGATG-TTTTAG
1 AGCCGTTTGGGGATGATTTTAG
45796 AGCCGTTTGGGGATGATTTT
1 AGCCGTTTGGGGATGATTTT
45816 TATACTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.15, C:0.10, G:0.38, T:0.38
Consensus pattern (22 bp):
AGCCGTTTGGGGATGATTTTAG
Found at i:45870 original size:21 final size:21
Alignment explanation
Indices: 45844--45885 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
45834 CCAGAATGGG
*
45844 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
45865 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
45886 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:46081 original size:30 final size:31
Alignment explanation
Indices: 46030--46120 Score: 159
Period size: 31 Copynumber: 3.0 Consensus size: 31
46020 AAATTTTAAA
*
46030 TAAATTCAATT-AAGTCTAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
46059 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
46090 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
46121 CCTTAAATTG
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
29 11 0.19
30 10 0.17
31 38 0.64
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:48456 original size:55 final size:55
Alignment explanation
Indices: 48385--48494 Score: 184
Period size: 55 Copynumber: 2.0 Consensus size: 55
48375 TGGAATATGC
* * *
48385 TATTCAATTGGCTTCTTGAGAATTTAATACTATGGTCTTTTCATAAAATTTAAAT
1 TATTAAATTGGCTTCTTGAGAAATTAATACTATGGTATTTTCATAAAATTTAAAT
*
48440 TATTAAATTGGCTTCTTGAGAAATTAATACTATGGTATTTTCGTAAAATTTAAAT
1 TATTAAATTGGCTTCTTGAGAAATTAATACTATGGTATTTTCATAAAATTTAAAT
48495 ATCAAATATA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.45
Consensus pattern (55 bp):
TATTAAATTGGCTTCTTGAGAAATTAATACTATGGTATTTTCATAAAATTTAAAT
Found at i:53800 original size:30 final size:31
Alignment explanation
Indices: 53741--53867 Score: 150
Period size: 30 Copynumber: 4.2 Consensus size: 31
53731 TTAAAAACTT
* * *
53741 AAATTTTAATTTGATCTTTAAACTTTAGATA
1 AAATATTAATTTAACCTTTAAACTTTAGATA
*
53772 AAATATTAATTTAACCTTT-AATTTTAGATA
1 AAATATTAATTTAACCTTTAAACTTTAGATA
* * **
53802 AAATCTCAATTTAGTCTTTAAACTTTAGATA
1 AAATATTAATTTAACCTTTAAACTTTAGATA
* *
53833 AAATATTAATTTAACC-TTCAACTTTAAATA
1 AAATATTAATTTAACCTTTAAACTTTAGATA
53863 AAATA
1 AAATA
53868 CCTGCCTGCG
Statistics
Matches: 80, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
30 42 0.52
31 38 0.47
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (31 bp):
AAATATTAATTTAACCTTTAAACTTTAGATA
Found at i:54031 original size:39 final size:38
Alignment explanation
Indices: 53949--54035 Score: 156
Period size: 38 Copynumber: 2.3 Consensus size: 38
53939 ATCCTTAGTA
* *
53949 TAAAAAATGCACAAGACAATTTAGATAATAAAATCCTT
1 TAAAAAAAGAACAAGACAATTTAGATAATAAAATCCTT
53987 TAAAAAAAGAACAAGACAATTTAGATAATAAAATCCTT
1 TAAAAAAAGAACAAGACAATTTAGATAATAAAATCCTT
54025 TAAAAAAAGAA
1 TAAAAAAAGAA
54036 GTCTAGTTAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.59, C:0.10, G:0.08, T:0.23
Consensus pattern (38 bp):
TAAAAAAAGAACAAGACAATTTAGATAATAAAATCCTT
Found at i:54503 original size:33 final size:31
Alignment explanation
Indices: 54461--54530 Score: 95
Period size: 33 Copynumber: 2.2 Consensus size: 31
54451 TTTGATTTCT
* *
54461 CTCTCATTTTCTATGGTTAGTTATACTTTGCCC
1 CTCTCATTTTCTATGATTAATTATA-TTT-CCC
54494 CTCTCATTTTCTATGATTAATTATATTTCCC
1 CTCTCATTTTCTATGATTAATTATATTTCCC
*
54525 CCCTCA
1 CTCTCA
54531 AGTTGGAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 8 0.24
32 3 0.09
33 23 0.68
ACGTcount: A:0.19, C:0.27, G:0.07, T:0.47
Consensus pattern (31 bp):
CTCTCATTTTCTATGATTAATTATATTTCCC
Found at i:55776 original size:14 final size:15
Alignment explanation
Indices: 55757--55795 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
55747 TATAAGGTAA
55757 TTTTATTATA-ATAT
1 TTTTATTATACATAT
*
55771 TTTTATTATACTTAT
1 TTTTATTATACATAT
55786 TGTTTATTAT
1 T-TTTATTAT
55796 GATTATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.45
15 4 0.18
16 8 0.36
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTATTATACATAT
Found at i:55801 original size:16 final size:14
Alignment explanation
Indices: 55757--55803 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 14
55747 TATAAGGTAA
*
55757 TTTTATTATAATAT
1 TTTTATTATATTAT
55771 TTTTATTATACTTAT
1 TTTTATTATA-TTAT
55786 TGTTTATTATGATTAT
1 T-TTTATTAT-ATTAT
55802 TT
1 TT
55804 GAAAAAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 10 0.34
15 5 0.17
16 13 0.45
17 1 0.03
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (14 bp):
TTTTATTATATTAT
Found at i:59275 original size:35 final size:34
Alignment explanation
Indices: 59190--59276 Score: 90
Period size: 35 Copynumber: 2.5 Consensus size: 34
59180 AATATAATTT
*
59190 TAAATACAACAAACTTACAATAAGTATTAAATGG
1 TAAATACAACAAAATTACAATAAGTATTAAATGG
*
59224 TAAATGATAA-ACAAATTACAATAACTGATATTAAATGG
1 TAAAT-ACAACA-AAATTACAATAA--G-TATTAAATGG
59262 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
59277 ACCAAAATAC
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
34 6 0.13
35 22 0.49
36 2 0.04
37 4 0.09
38 11 0.24
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.28
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGTATTAAATGG
Found at i:60404 original size:23 final size:23
Alignment explanation
Indices: 60371--60432 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
60361 CTCGTATAAA
*
60371 TGCACCAAAGTGCCATGTAGAAT
1 TGCACCGAAGTGCCATGTAGAAT
**
60394 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCATGTAGAAT
*
60417 TGCACCGTAGTGCCAT
1 TGCACCGAAGTGCCAT
60433 ATAAGATTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.21
Consensus pattern (23 bp):
TGCACCGAAGTGCCATGTAGAAT
Found at i:61225 original size:19 final size:19
Alignment explanation
Indices: 61201--61248 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
61191 TTTTAAATTA
61201 GTGCATCGATGCACTTTAT
1 GTGCATCGATGCACTTTAT
61220 GTGCATCGATGCACTTTAT
1 GTGCATCGATGCACTTTAT
61239 GTGCATCGAT
1 GTGCATCGAT
61249 ACACCTTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (19 bp):
GTGCATCGATGCACTTTAT
Found at i:61306 original size:21 final size:21
Alignment explanation
Indices: 61282--61335 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
61272 TTATCCTTGA
61282 TGCATCGGTGCATATTGAATG
1 TGCATCGGTGCATATTGAATG
61303 TGCATCGGTGCATATTGAATG
1 TGCATCGGTGCATATTGAATG
*
61324 TGCATCGATGCA
1 TGCATCGGTGCA
61336 CATAGCCTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (21 bp):
TGCATCGGTGCATATTGAATG
Found at i:61814 original size:13 final size:13
Alignment explanation
Indices: 61796--61821 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
61786 CTTCACGGTG
61796 AAGAAGAAGAAAA
1 AAGAAGAAGAAAA
61809 AAGAAGAAGAAAA
1 AAGAAGAAGAAAA
61822 TCTGGAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAGAAGAAGAAAA
Found at i:68721 original size:13 final size:13
Alignment explanation
Indices: 68703--68728 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68693 TCTTCACGGT
68703 GAAGAAGAAGAAA
1 GAAGAAGAAGAAA
68716 GAAGAAGAAGAAA
1 GAAGAAGAAGAAA
68729 AATCTGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAA
Found at i:70833 original size:27 final size:26
Alignment explanation
Indices: 70803--70854 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
70793 TATGCAAAAA
*
70803 AAATAATTAAATAAATATTAAAAAATT
1 AAATAATTAAATAAAT-TAAAAAAATT
*
70830 AAATACTTAAATAAATTAAAAAAAT
1 AAATAATTAAATAAATTAAAAAAAT
70855 ATTAAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (26 bp):
AAATAATTAAATAAATTAAAAAAATT
Found at i:70879 original size:20 final size:19
Alignment explanation
Indices: 70815--70880 Score: 54
Period size: 20 Copynumber: 3.6 Consensus size: 19
70805 ATAATTAAAT
70815 AAATA-TTAAA-AAATT--
1 AAATACTTAAATAAATTAA
70830 AAATACTTAAATAAATTAAAA
1 AAATACTTAAATAAATT--AA
70851 AAATA-TTAAATATAA-TAA
1 AAATACTTAAATA-AATTAA
70869 AAATACCTTAAA
1 AAATA-CTTAAA
70881 CAATTATAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
15 5 0.12
16 5 0.12
17 5 0.12
18 7 0.17
20 13 0.31
21 7 0.17
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
AAATACTTAAATAAATTAA
Found at i:72104 original size:2 final size:2
Alignment explanation
Indices: 72097--72134 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
72087 AGATATTCAA
*
72097 AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72135 GGTACAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:80426 original size:28 final size:28
Alignment explanation
Indices: 80394--80477 Score: 159
Period size: 28 Copynumber: 3.0 Consensus size: 28
80384 TATTCCATAT
80394 TGCTTCACTGACTCTCCTTGATTTCTCG
1 TGCTTCACTGACTCTCCTTGATTTCTCG
80422 TGCTTCACTGACTCTCCTTGATTTCTCG
1 TGCTTCACTGACTCTCCTTGATTTCTCG
*
80450 TGCTTCACTGACTCTCGTTGATTTCTCG
1 TGCTTCACTGACTCTCCTTGATTTCTCG
80478 AGCAACTATA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.11, C:0.31, G:0.15, T:0.43
Consensus pattern (28 bp):
TGCTTCACTGACTCTCCTTGATTTCTCG
Found at i:80840 original size:58 final size:58
Alignment explanation
Indices: 80768--80883 Score: 178
Period size: 58 Copynumber: 2.0 Consensus size: 58
80758 CCTTTGAAGA
* * * *
80768 TCTCAGGAGGTTTGGATTCGTGCGTAGGTTTCTCACCAGTCACCAACTCAAGATGAAC
1 TCTCAGGAGCTTTGGATACGTGCGTAAGTTTCTCACCAGTCACCAACTCAAGAAGAAC
* *
80826 TCTCAGGAGCTTTGGATACGTGTGTAAGTTTCTCACCAGTCACCAGCTCAAGAAGAAC
1 TCTCAGGAGCTTTGGATACGTGCGTAAGTTTCTCACCAGTCACCAACTCAAGAAGAAC
80884 CACTCCAAAG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (58 bp):
TCTCAGGAGCTTTGGATACGTGCGTAAGTTTCTCACCAGTCACCAACTCAAGAAGAAC
Found at i:84456 original size:33 final size:33
Alignment explanation
Indices: 84365--84466 Score: 165
Period size: 32 Copynumber: 3.2 Consensus size: 33
84355 ACAAAGTTTA
* *
84365 CGAT-AATTGAAATAC-TAAATACTTCCAAGTT
1 CGATAAATTCAAATACTTAAAAACTTCCAAGTT
84396 CGATAAATTCAAATACTT-AAAACTTCCAAGTT
1 CGATAAATTCAAATACTTAAAAACTTCCAAGTT
84428 CGATAAATTCAAATACTTAAAAACTTCCAAGTT
1 CGATAAATTCAAATACTTAAAAACTTCCAAGTT
84461 CGATAA
1 CGATAA
84467 TTGAAACAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
31 4 0.06
32 41 0.62
33 21 0.32
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (33 bp):
CGATAAATTCAAATACTTAAAAACTTCCAAGTT
Found at i:84486 original size:21 final size:21
Alignment explanation
Indices: 84461--84502 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
84451 CTTCCAAGTT
84461 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
84482 CGATAATTGAAATAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
84503 AAAATAACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Done.