genome.fa.s5759.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005759.1 Hibiscus syriacus cultivar Beakdansim tig00013483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72432

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1046--1125	41	2.0	41	97	0	151	47	12	11	28	1.76
8223--8252	12	2.5	12	94	0	51	40	6	16	36	1.75
12838--12876	20	2.0	20	89	0	60	58	0	5	35	1.20
17710--17741	13	2.4	14	94	5	57	46	0	0	53	1.00
22254--22293	8	5.1	8	84	3	55	27	0	0	72	0.85
22596--22667	16	4.9	15	72	26	57	65	2	2	29	1.21
22576--22681	41	2.7	38	84	9	140	66	1	2	28	1.16
22576--22680	39	2.6	39	85	8	140	67	1	2	27	1.15
22593--22670	15	5.4	15	77	22	71	66	2	2	28	1.18
23214--23270	29	2.0	29	96	0	105	15	38	26	19	1.92
23309--23383	20	3.8	20	81	11	102	21	42	17	18	1.89
23365--23415	26	2.0	26	100	0	102	15	47	17	19	1.83
23367--23425	26	2.2	26	87	3	82	20	47	15	16	1.83
23455--23510	29	1.9	29	92	0	94	8	23	35	32	1.86
27791--27842	20	2.6	20	96	0	95	38	26	13	21	1.90
27832--27930	21	4.8	20	72	6	72	36	23	19	21	1.95
27897--28090	20	9.6	20	81	5	221	35	25	19	19	1.95
27897--28090	60	3.2	60	83	0	253	35	25	19	19	1.95
28472--28542	33	2.2	33	92	0	115	11	22	18	47	1.80
28663--28717	14	3.6	14	73	21	56	40	23	27	9	1.85
28663--28733	33	2.2	33	92	0	115	42	25	23	8	1.82
28729--28826	19	5.7	19	70	22	81	10	24	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28751--28840	14	5.7	14	74	23	81	8	25	23	42	1.83
28734--28848	33	3.5	33	95	0	212	9	24	20	45	1.81
30545--30831	93	3.1	93	98	1	567	22	12	18	46	1.83
30875--31003	19	7.3	19	75	17	125	45	28	17	8	1.77
30911--31003	33	2.8	32	91	4	150	46	27	18	7	1.76
30875--31003	52	2.5	52	74	14	140	45	28	17	8	1.77
30999--31133	19	7.6	19	75	16	128	11	19	23	45	1.82
31021--31077	14	3.7	14	77	20	60	10	21	22	45	1.82
31004--31096	33	2.8	33	95	0	168	10	20	21	47	1.80
33037--33072	14	2.6	14	95	0	63	33	0	22	44	1.53
33179--33280	19	5.6	19	84	13	151	44	17	23	14	1.86
33309--33615	19	17.4	19	78	16	349	14	20	17	47	1.83
33309--33548	71	3.4	71	83	11	355	15	20	17	47	1.83
33277--33615	142	2.4	136	89	6	495	15	20	17	46	1.83
33309--33587	52	5.2	52	90	6	345	15	20	16	47	1.83
33287--33615	33	9.5	33	74	19	178	14	20	17	46	1.83
35920--35944	12	2.1	12	100	0	50	0	28	0	72	0.86
36119--36165	24	2.0	24	87	8	69	38	21	14	25	1.92
36838--37206	20	18.5	20	86	4	458	20	18	26	34	1.96
44297--44335	21	1.9	21	89	5	62	15	20	33	30	1.94
44302--44365	21	3.1	21	81	2	67	17	18	34	29	1.94
49418--49488	4	17.8	4	100	0	142	25	50	23	0	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51432--51578	60	2.4	59	79	4	152	32	17	18	31	1.94
53176--53209	17	1.9	18	88	5	52	55	8	0	35	1.31
54707--54898	98	1.9	99	90	1	305	28	13	5	52	1.63
55498--55524	10	2.7	10	100	0	54	18	22	22	37	1.95
56552--56578	14	1.9	14	100	0	54	51	14	0	33	1.43
62316--62352	19	1.9	19	88	0	56	40	0	0	59	0.97
62645--62685	16	2.5	17	80	15	50	48	2	0	48	1.14
64385--64428	23	1.9	23	81	9	54	50	18	22	9	1.75
64392--64442	23	2.2	22	82	6	57	52	17	21	7	1.69
64645--64909	20	13.9	20	76	10	241	33	21	18	26	1.97
64653--64870	54	3.9	54	84	4	247	33	23	17	24	1.96
64948--65005	20	2.9	20	76	5	64	13	17	24	44	1.85
65104--65165	14	4.3	14	77	6	61	46	14	0	38	1.45
66588--66678	42	2.2	42	80	4	103	23	16	38	21	1.93
67165--67250	20	4.5	19	89	5	120	36	26	18	18	1.94
67293--67358	20	3.3	20	89	0	96	18	19	24	37	1.93
67889--67937	18	2.7	18	96	0	89	12	12	44	30	1.78
69255--69361	20	5.4	20	83	3	110	45	23	15	14	1.84
69930--70027	20	4.9	20	87	2	135	26	21	26	25	1.99
69941--70027	39	2.2	40	89	2	131	26	21	27	24	1.99
69941--70042	20	5.2	20	87	2	125	26	22	25	25	2.00
69941--70042	39	2.6	39	85	1	114	26	22	25	25	2.00

Tables:   1

The End!