Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005760.1 Hibiscus syriacus cultivar Beakdansim tig00013486_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75256

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12479--12537
20
3.0
20
74
0
64
33
28
11
25
1.91
12521--12594
20
3.7
20
87
0
94
25
21
21
31
1.98
12581--12656
20
3.8
20
75
5
64
32
32
18
15
1.93
12928--13124
21
9.7
21
76
9
131
25
19
29
25
1.98
13009--13099
20
4.6
20
77
6
87
24
20
29
25
1.99
12984--13079
20
4.8
20
81
3
104
28
22
28
20
1.99
12963--13079
40
2.9
39
81
10
119
26
23
28
22
1.99
13045--13162
20
5.8
20
74
5
94
23
16
29
30
1.96
12984--13161
61
2.9
60
80
7
164
25
17
29
26
1.98
13064--13162
41
2.4
41
84
1
119
24
14
29
32
1.94
16849--16877
6
4.8
6
100
0
58
51
0
0
48
1.00
23543--23602
29
2.1
29
96
0
111
51
13
11
23
1.73
28223--28290
29
2.3
29
100
0
136
50
13
11
25
1.75
30270--30345
31
2.4
30
78
6
80
27
31
25
15
1.96
31215--31252
7
5.4
7
100
0
76
26
28
28
15
1.96
31242--31284
22
2.0
22
100
0
86
9
23
48
18
1.76
31281--31379
9
10.3
9
73
10
72
29
26
27
17
1.97
31287--31380
19
4.8
19
77
13
77
29
26
25
18
1.98
31306--31380
29
2.5
31
89
8
120
29
26
26
17
1.97
31342--31380
21
1.9
21
89
5
62
33
23
25
17
1.96
37552--37684
63
2.1
62
81
10
146
27
27
27
17
1.98
38555--38585
7
4.4
7
91
0
53
29
29
25
16
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38576--38635
17
3.2
17
79
20
75
13
23
45
18
1.84
38582--38634
22
2.4
22
96
0
97
9
22
49
18
1.76
38631--38758
9
13.3
9
78
11
121
29
28
27
14
1.95
38633--38738
19
5.5
19
79
12
110
29
29
26
15
1.96
38656--38758
10
10.7
9
74
13
80
30
28
27
14
1.95
50511--50551
21
1.9
22
85
5
57
53
9
2
34
1.47
51175--51220
18
2.5
19
92
3
76
78
0
10
10
0.97
59600--59666
22
3.1
22
84
4
91
23
22
23
29
1.99
59603--59666
21
3.0
22
83
4
76
21
23
25
29
1.99
61042--61166
64
1.9
66
85
6
175
28
20
16
35
1.94
61042--61202
64
2.5
62
81
8
162
27
20
18
34
1.95
72211--72275
17
3.6
19
78
17
68
38
12
36
12
1.80
73551--73846
116
2.6
115
96
2
540
41
17
10
29
1.83

Tables:   1

The End!