Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005761.1 Hibiscus syriacus cultivar Beakdansim tig00013488_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118407

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1344--1662
170
1.9
172
91
4
529
42
2
7
46
1.47
5490--5681
99
1.9
99
93
2
332
50
15
15
19
1.79
7783--7838
21
2.7
21
97
0
103
41
7
3
48
1.48
14257--14296
21
1.9
21
84
0
53
40
5
17
37
1.72
22320--22384
33
2.0
33
90
0
103
18
7
29
44
1.77
22958--23057
50
2.0
50
100
0
200
32
14
10
44
1.78
24446--24493
22
2.2
22
84
0
60
20
8
6
64
1.43
31484--31528
23
2.0
23
90
0
72
24
26
26
22
2.00
32569--32603
18
1.9
18
88
11
54
22
17
5
54
1.64
33187--33231
21
2.1
21
87
0
63
15
24
28
31
1.96
36031--36078
22
2.2
22
84
0
60
20
8
6
64
1.43
52550--52625
37
2.1
37
92
5
127
34
15
19
30
1.93
61154--61189
18
2.0
18
88
0
54
2
19
30
47
1.64
63915--63947
17
1.9
17
88
11
50
66
0
12
21
1.23
77910--77964
24
2.3
24
93
0
92
18
9
16
56
1.66
82711--82777
16
4.3
16
88
3
93
10
8
19
61
1.54
82705--82769
32
2.0
32
90
0
103
7
9
23
60
1.53
82699--82759
22
2.9
22
71
22
58
8
9
22
59
1.56
94424--94491
31
2.2
32
84
7
86
41
2
8
47
1.50
101211--101254
21
2.1
21
83
8
54
45
11
9
34
1.72
101386--101428
22
2.0
22
90
0
68
37
0
2
60
1.10
101459--101518
25
2.4
25
94
0
102
35
8
11
45
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106110--106146
19
1.9
19
88
0
56
32
27
16
24
1.96
106214--106271
21
2.8
21
77
12
75
31
27
18
22
1.97
106170--106300
41
3.2
41
76
12
126
32
23
16
27
1.96
107099--107152
24
2.2
24
86
0
72
22
20
18
38
1.93
108358--108420
22
2.8
23
82
4
83
26
25
26
20
1.99
115092--115153
21
2.8
22
73
9
63
29
27
22
20
1.99
118047--118099
20
2.6
22
74
17
60
24
13
41
20
1.88
118247--118321
21
3.7
20
77
12
80
22
17
24
36
1.95
118309--118398
38
2.3
40
90
3
148
28
18
20
32
1.96
118315--118379
19
3.3
20
71
16
73
26
18
20
35
1.95

Tables:   1

The End!