genome.fa.s5763.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005763.1 Hibiscus syriacus cultivar Beakdansim tig00013492_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52514

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4058--4114	29	2.0	28	86	3	78	19	33	22	24	1.97
4125--4279	29	5.3	29	92	1	240	34	6	15	43	1.72
13272--13358	15	5.9	15	80	2	104	39	6	17	36	1.76
13273--13358	30	2.9	29	87	5	118	39	6	16	37	1.75
13341--13390	20	2.5	20	96	0	91	42	10	14	34	1.78
13466--13499	17	1.9	17	88	5	50	47	0	0	52	1.00
13475--13562	31	2.8	32	75	17	94	51	0	0	48	1.00
13478--13571	23	3.6	26	71	23	72	48	0	0	51	1.00
13494--13537	22	2.0	23	86	4	63	54	0	0	45	0.99
13498--13554	21	2.6	22	81	10	64	52	0	0	47	1.00
13743--13862	42	2.9	42	88	1	179	48	18	16	16	1.82
17558--17708	18	8.6	18	76	11	134	28	19	10	41	1.84
17564--17708	35	4.1	35	83	9	152	28	17	11	42	1.83
17564--17680	53	2.2	54	89	3	175	29	17	11	41	1.85
22913--22952	16	2.4	17	91	4	64	27	27	12	32	1.93
22925--23001	22	4.1	18	71	15	57	29	20	9	40	1.83
22913--22977	17	3.8	17	80	6	60	30	24	9	35	1.87
22957--23000	22	2.0	23	90	4	72	31	20	6	40	1.79
23917--23953	19	1.9	19	94	0	65	32	29	16	21	1.95
23919--24129	41	5.1	42	78	7	134	31	25	18	24	1.97
23979--24091	20	5.6	20	70	8	84	30	24	19	24	1.98
23979--24160	41	4.4	41	82	4	202	33	23	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24620--24728	19	5.4	19	73	13	74	33	26	4	35	1.77
24737--24790	21	2.6	21	79	2	56	24	18	24	33	1.97
25608--25712	34	3.1	34	81	10	142	17	8	13	60	1.56
25824--25882	20	3.2	19	70	22	54	20	10	13	55	1.66
25815--25883	35	2.0	35	88	0	102	17	8	11	62	1.53
26467--26526	27	2.2	27	87	0	93	31	35	16	16	1.92
26660--26740	28	2.9	28	85	5	101	48	0	2	49	1.14
26683--26740	15	4.0	15	88	8	93	50	0	0	50	1.00
26683--26903	36	6.5	33	70	16	148	39	0	9	50	1.35
26772--26814	22	2.0	22	100	0	86	34	0	13	51	1.42
26795--26900	32	3.6	31	76	23	131	35	0	13	50	1.41
26726--27631	54	16.8	54	68	19	418	34	0	12	52	1.41
26827--26868	22	1.9	22	100	0	84	35	0	14	50	1.43
26831--27476	80	8.0	80	85	7	389	34	0	12	52	1.42
26937--26989	14	3.5	14	72	18	52	35	0	7	56	1.28
26927--27012	32	2.7	31	90	3	136	34	0	12	52	1.40
26798--27306	160	3.1	162	84	9	594	34	0	12	53	1.39
27199--27306	32	3.7	32	74	23	128	37	0	9	52	1.33
27232--27274	22	2.0	22	100	0	86	39	0	9	51	1.34
27045--27616	214	2.7	213	93	0	984	34	0	12	52	1.42
26962--27616	294	2.2	290	87	6	955	34	0	12	52	1.42
27414--27536	53	2.3	54	92	1	203	34	0	11	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27205--27631	133	3.2	132	87	7	548	35	0	11	52	1.42
27579--27621	22	2.0	22	100	0	86	34	0	13	51	1.42
27646--27704	31	1.9	31	92	0	100	42	10	6	40	1.65
28128--28193	22	3.0	22	78	10	73	7	16	21	54	1.66
28128--28187	21	2.8	20	80	9	66	8	16	20	55	1.67
32021--32131	40	2.9	39	77	6	111	34	18	9	36	1.85
32297--32384	32	3.0	28	82	11	88	28	20	11	39	1.87
32230--32541	126	2.5	127	82	7	395	25	19	14	40	1.90
32436--32508	30	2.4	30	77	8	78	30	20	12	36	1.89
32486--32616	67	2.0	67	83	4	167	29	13	14	42	1.84
32230--32577	126	2.8	127	80	7	390	27	18	14	39	1.89
32769--33188	131	3.2	131	83	4	499	25	29	17	27	1.98
33229--33326	40	2.3	40	77	6	97	24	32	16	26	1.96
35590--35620	5	6.2	5	92	0	53	16	0	3	80	0.83
38482--38579	45	2.2	45	89	7	146	23	37	14	24	1.92
39241--39376	63	2.1	64	81	4	150	31	11	5	51	1.60
39626--39650	11	2.3	11	100	0	50	32	0	0	68	0.90
43300--43436	72	1.9	72	89	3	213	28	21	18	32	1.96
45034--45067	17	2.0	18	88	11	54	47	2	29	20	1.65
45231--45446	54	4.0	54	86	4	301	36	13	24	25	1.92
45231--45441	109	1.9	108	89	2	325	36	13	24	26	1.92
46536--46796	73	3.6	73	92	0	432	31	16	12	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46832--47100	39	6.9	39	85	1	342	43	11	24	21	1.85
46801--47100	78	3.8	77	88	2	422	42	11	24	22	1.85
46801--47100	117	2.6	117	84	6	374	42	11	24	22	1.85
47397--47518	45	2.7	45	81	8	133	24	40	13	22	1.89
48146--48282	63	2.2	64	85	6	181	32	10	2	54	1.49
51941--51987	3	15.7	3	82	8	60	68	0	0	31	0.90

Tables:   1

The End!