genome.fa.s5765.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005765.1 Hibiscus syriacus cultivar Beakdansim tig00013497_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  269056

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14054--14147	48	2.0	48	89	0	143	21	24	23	30	1.99
16666--16731	7	9.4	7	98	0	123	13	13	56	16	1.68
18746--18806	22	2.8	22	100	0	122	44	13	9	32	1.76
30129--30161	15	2.3	15	89	5	50	54	0	3	42	1.15
30144--30189	24	1.9	24	81	0	56	56	2	2	39	1.24
30560--30654	21	4.6	21	80	2	102	24	16	25	33	1.96
30707--30746	19	2.1	19	90	0	62	20	15	30	35	1.93
30705--30754	19	2.5	19	80	9	55	18	18	30	34	1.94
30853--30886	10	3.1	11	91	8	52	38	44	17	0	1.49
31384--31438	6	9.2	6	100	0	110	0	16	49	34	1.46
31532--31621	41	2.2	41	93	0	153	40	22	17	20	1.92
31613--31787	41	4.3	40	80	7	133	38	24	20	17	1.92
31634--31807	20	8.6	20	71	16	135	40	22	21	14	1.90
31572--31850	102	2.7	102	80	9	311	38	23	18	19	1.93
31648--31743	19	4.8	19	75	11	86	42	19	20	16	1.89
31554--31764	22	10.2	22	70	14	87	39	23	18	18	1.92
31796--31849	21	2.6	21	90	0	90	29	25	16	27	1.97
31532--31807	143	1.9	143	91	2	448	39	22	19	17	1.92
38146--38215	2	35.0	2	100	0	140	50	0	0	50	1.00
39794--39840	2	24.0	2	95	4	87	48	51	0	0	1.00
41561--41593	17	1.9	17	93	0	57	42	9	36	12	1.74
48093--48124	12	2.7	12	100	0	64	43	6	50	0	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48531--48596	7	9.6	7	96	3	125	28	30	13	27	1.94
48539--48603	20	3.2	20	88	2	94	32	30	10	26	1.90
49272--49309	19	2.0	19	85	10	51	52	7	0	39	1.31
51529--51567	12	2.9	14	81	14	55	7	7	33	51	1.59
63396--63430	17	2.1	17	89	5	54	60	2	0	37	1.12
67005--67077	24	3.0	24	89	0	101	28	39	15	16	1.89
67657--67877	36	6.3	35	83	8	229	26	43	12	18	1.85
67651--67877	69	3.2	69	81	7	244	26	44	11	17	1.84
67648--67873	72	3.2	71	80	6	253	26	44	11	17	1.82
73557--73638	29	2.8	29	94	1	137	32	14	9	42	1.79
78307--78388	29	2.8	29	94	1	137	32	14	9	42	1.79
93839--93886	21	2.3	21	100	0	96	29	25	14	31	1.95
103348--103375	14	2.0	14	100	0	56	50	7	0	42	1.30
104132--104185	22	2.4	23	93	3	92	53	18	25	1	1.54
110822--110860	20	2.0	19	85	14	53	38	10	10	41	1.73
115218--115621	200	2.0	203	98	1	787	39	12	17	30	1.86
126563--126600	18	2.1	18	100	0	76	36	10	5	47	1.61
127728--127761	18	1.9	18	88	5	52	17	26	29	26	1.98
140263--140322	22	2.7	21	77	10	57	50	3	3	43	1.35
140304--140337	16	2.1	16	88	0	50	50	0	2	47	1.16
140379--140412	16	2.0	18	88	11	54	26	2	5	64	1.30
140853--141097	130	1.9	130	90	0	391	35	13	14	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141498--141573	35	2.2	35	92	0	125	35	1	23	39	1.63
146347--146442	31	3.1	31	98	0	183	32	27	21	18	1.97
148155--148206	22	2.4	22	81	9	61	19	19	30	30	1.96
154121--154147	8	3.4	8	100	0	54	51	22	25	0	1.48
155285--155400	61	1.9	59	83	10	146	38	22	12	25	1.90
160295--160332	19	2.1	19	85	5	51	31	5	0	63	1.17
172464--172530	24	2.8	24	82	6	84	50	2	8	37	1.49
172896--172941	16	2.9	16	83	3	58	39	19	4	36	1.72
179103--179226	63	2.0	63	90	0	194	41	4	10	43	1.58
184739--184808	2	34.5	2	91	8	115	50	0	2	47	1.16
189837--189875	2	19.5	2	100	0	78	51	0	0	48	1.00
192295--192352	31	1.9	30	85	3	80	37	10	13	37	1.79
192832--192889	29	2.0	29	86	0	80	46	0	12	41	1.41
199166--199220	24	2.3	25	84	9	78	9	20	27	43	1.81
203694--203743	22	2.3	23	79	10	59	18	12	16	54	1.72
208246--208621	190	2.0	189	93	0	644	37	10	24	28	1.88
208707--208746	17	2.4	17	100	0	80	17	25	27	30	1.97
219697--219751	20	2.8	20	91	0	83	29	20	16	34	1.94
220958--221007	19	2.7	17	80	17	55	50	0	2	48	1.12
221275--221315	19	2.2	19	86	8	57	53	4	0	41	1.22
223437--223857	214	2.0	211	98	1	815	31	19	21	27	1.97
231061--231091	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235471--235521	25	2.0	25	82	14	61	52	25	5	15	1.65
240419--240501	32	2.6	31	74	12	87	38	2	10	48	1.51
243916--244985	536	2.0	536	99	0	2131	29	27	15	27	1.96
251698--251728	16	1.9	16	93	0	53	54	16	9	19	1.68
259172--259246	36	2.1	36	85	5	98	48	1	4	46	1.29
260203--260261	16	3.8	16	90	2	75	38	20	6	33	1.79
262098--262614	43	12.2	42	75	13	395	47	5	22	24	1.71
262090--262404	169	1.9	166	82	5	402	48	5	21	24	1.70
262091--262614	85	6.2	85	74	12	296	47	5	21	25	1.71

Tables:   1

The End!