genome.fa.s5766.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005766.1 Hibiscus syriacus cultivar Beakdansim tig00013498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72949

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4655--5652	335	3.0	331	86	5	1413	34	11	17	36	1.86
7633--7672	21	1.9	21	84	0	53	30	15	12	42	1.83
8328--8440	41	2.8	41	81	9	124	52	7	0	40	1.29
8371--8426	21	2.6	22	75	16	55	51	5	0	42	1.24
10281--10313	15	2.3	15	94	5	59	36	21	6	36	1.78
10406--10468	30	2.2	29	82	5	74	25	12	7	53	1.65
14942--15298	116	3.1	115	81	4	412	35	15	21	27	1.94
19620--19769	80	1.9	77	87	4	219	32	17	6	44	1.75
20275--20305	2	16.0	2	93	6	55	48	0	0	51	1.00
30629--30729	49	2.1	48	88	1	148	40	20	4	33	1.74
32340--32414	24	3.1	24	88	0	96	29	14	13	42	1.84
36197--36361	21	8.0	21	74	11	144	21	20	23	34	1.97
36222--36358	42	3.3	41	94	2	231	21	19	23	35	1.96
36964--36995	5	6.6	5	96	3	57	0	40	21	37	1.54
36992--37022	6	5.2	6	100	0	62	0	16	48	35	1.46
37119--37291	21	8.4	21	71	19	141	37	21	19	21	1.94
37119--37247	61	2.1	61	91	5	208	38	20	18	21	1.93
37182--37298	40	2.9	40	92	2	198	36	23	18	21	1.95
37139--37316	21	8.6	21	71	15	88	37	23	19	20	1.95
37325--37377	21	2.5	22	81	9	65	18	22	28	30	1.98
42598--42665	22	3.3	22	65	23	65	32	2	14	50	1.58
42596--42685	40	2.2	40	100	0	180	34	2	14	48	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42623--42699	20	3.8	19	67	16	57	36	2	12	48	1.56
57025--57061	3	12.3	3	94	0	65	32	2	0	64	1.07
60505--60575	3	23.3	3	85	2	97	61	1	2	33	1.19
60726--61213	129	3.8	129	85	2	602	24	17	31	26	1.97
60764--61182	46	9.8	42	65	15	148	24	17	31	26	1.97
61272--61325	28	1.9	28	85	7	74	40	12	18	27	1.87
61322--61371	21	2.4	21	96	0	91	40	8	26	26	1.83
61264--61437	86	2.0	86	86	2	242	40	8	21	29	1.83
61388--61647	72	3.8	68	77	10	276	40	13	19	25	1.89
61526--61647	36	3.4	36	94	0	208	40	13	20	25	1.88
61426--61612	101	1.9	100	88	1	284	40	14	19	25	1.90
61350--61700	137	2.6	136	90	1	551	39	11	19	28	1.87
61698--62021	124	2.7	119	81	7	357	25	18	23	32	1.97
61698--62325	121	5.1	121	70	12	407	25	18	23	33	1.97
61930--62455	255	2.1	254	92	0	872	24	17	22	35	1.95
63055--63128	32	2.3	32	86	4	96	33	21	16	28	1.95
64882--64918	19	1.9	19	94	0	65	13	35	29	21	1.92
66197--66244	24	2.0	24	100	0	96	20	16	29	33	1.95
67179--67219	20	2.0	20	100	0	82	14	29	41	14	1.86

Tables:   1

The End!