genome.fa.s5767.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005767.1 Hibiscus syriacus cultivar Beakdansim tig00013501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  207275

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6033--6117	11	7.2	11	72	22	66	31	36	3	28	1.74
6030--6134	36	2.9	36	94	1	176	31	35	4	28	1.78
6506--6549	17	2.5	19	82	13	51	75	6	18	0	1.02
9749--9833	11	7.2	11	72	22	66	31	34	3	30	1.75
9746--9850	36	2.9	36	94	1	176	30	34	4	30	1.78
16721--16903	91	2.0	91	92	0	303	19	27	22	29	1.98
20176--20358	91	2.0	91	89	0	276	19	27	21	31	1.98
35088--35138	19	2.6	20	90	3	77	43	5	15	35	1.71
39139--39189	19	2.6	20	90	3	77	43	5	15	35	1.71
43317--43351	16	2.2	16	90	10	54	11	25	0	62	1.28
49661--49711	20	2.6	20	90	3	77	35	15	5	43	1.71
50121--50170	23	2.2	22	86	10	66	26	8	0	66	1.19
53856--53906	20	2.6	20	90	3	77	35	15	5	43	1.71
54317--54366	23	2.2	22	86	10	66	26	8	0	66	1.19
55844--55869	13	2.0	13	100	0	52	38	0	30	30	1.58
65202--65230	14	2.1	14	100	0	58	24	13	6	55	1.63
65218--65257	20	1.9	22	90	10	66	25	20	10	45	1.81
66755--66809	23	2.3	25	84	6	78	60	12	18	9	1.58
79787--79843	15	3.7	15	81	6	69	68	0	15	15	1.22
80456--80520	13	5.4	12	75	21	57	29	3	35	32	1.73
80438--80541	36	2.9	36	92	1	165	29	2	35	31	1.72
85488--85544	15	3.7	15	81	6	69	68	0	15	15	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86159--86223	13	5.4	12	75	21	57	29	3	35	32	1.73
86141--86244	36	2.9	36	94	1	174	29	3	35	30	1.75
92432--92476	19	2.2	21	85	14	60	26	8	0	64	1.23
92428--92477	24	2.1	23	85	10	66	28	8	0	64	1.22
92737--92789	18	2.9	18	84	15	65	75	5	18	0	0.99
98033--98082	23	2.2	22	86	10	66	26	8	0	66	1.19
99438--99594	76	2.1	76	93	0	269	41	14	23	20	1.89
100870--100936	11	5.8	11	75	20	66	26	2	37	32	1.72
100870--100916	24	2.0	24	84	15	64	25	2	36	36	1.68
100870--100949	35	2.2	36	88	2	117	28	2	37	31	1.71
109583--109651	33	2.1	33	83	5	86	33	0	36	30	1.58
109637--109701	13	5.4	12	75	21	57	29	3	35	32	1.73
109622--109734	36	3.2	36	88	1	156	29	1	35	33	1.68
114811--114858	25	2.0	23	84	8	60	0	12	6	81	0.87
115201--115269	33	2.1	33	83	5	86	33	1	36	28	1.67
115255--115351	13	8.0	12	72	22	62	28	3	37	30	1.73
115240--115352	36	3.2	36	91	1	165	28	3	36	31	1.74
116809--116842	16	2.2	15	89	5	50	38	2	29	29	1.72
117530--117609	36	2.2	36	91	2	126	28	3	37	30	1.75
117949--117991	19	2.2	20	87	4	61	48	6	9	34	1.62
121574--121625	21	2.6	21	87	6	63	34	13	5	46	1.67
122037--122086	19	2.5	20	79	20	61	24	8	0	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122335--122406	34	2.2	31	83	11	83	73	2	15	8	1.18
125530--125581	21	2.6	21	90	6	81	32	13	7	46	1.72
125947--125999	23	2.2	25	86	6	74	26	5	0	67	1.12
125951--125999	19	2.5	20	78	21	59	26	6	0	67	1.14
126517--126677	52	3.1	51	88	4	218	42	11	19	25	1.85
137715--137774	24	2.5	23	77	17	68	18	5	6	70	1.29
137712--137774	25	2.5	25	75	12	65	17	6	6	69	1.31
139215--139367	52	3.0	52	87	3	204	43	9	19	26	1.82
139659--139704	23	2.0	23	83	8	58	36	6	8	47	1.60
141308--141360	16	3.2	16	82	15	72	77	1	20	0	0.87
141308--141360	8	6.4	8	82	8	52	77	1	20	0	0.87
141310--141365	5	11.8	5	72	24	50	76	1	21	0	0.87
147013--147071	24	2.5	23	83	5	66	61	15	15	8	1.56
147024--147069	24	2.0	23	95	4	83	58	19	13	8	1.60
154014--154172	73	2.2	73	86	7	220	40	21	16	20	1.91
155540--155569	13	2.4	13	94	5	53	43	0	30	26	1.55
158399--158535	71	1.9	71	85	2	186	32	2	36	27	1.72
158399--158535	36	3.9	36	85	1	188	32	2	36	27	1.72
158873--158915	20	2.2	20	88	12	63	51	9	9	30	1.65
164301--164362	19	3.2	20	82	11	60	3	14	6	75	1.12
168168--168218	19	2.6	20	87	3	68	45	5	13	35	1.68
170001--170052	21	2.6	21	90	6	81	32	13	7	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170464--170512	19	2.5	20	78	21	59	24	8	0	67	1.18
173642--173693	21	2.6	21	90	6	81	34	15	5	44	1.70
181349--181396	24	2.0	25	83	4	62	8	25	16	50	1.73
183729--183797	33	2.1	33	83	5	86	33	1	34	30	1.67
188236--188304	33	2.1	33	83	5	86	33	1	34	30	1.67
191222--191276	19	2.9	19	86	5	67	43	12	9	34	1.74
200265--200307	23	1.9	21	81	13	50	32	18	13	34	1.90
204961--205012	22	2.4	22	75	15	54	67	0	7	25	1.17
205411--205457	19	2.5	20	83	16	64	46	6	12	34	1.67

Tables:   1

The End!