genome.fa.s5768.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005768.1 Hibiscus syriacus cultivar Beakdansim tig00013502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76417

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2071--2111	21	1.9	22	90	5	66	70	2	17	9	1.25
8293--8344	27	1.9	27	92	0	86	28	9	30	30	1.89
14195--14237	14	3.4	14	70	29	51	55	0	4	39	1.20
14188--14251	23	2.9	23	95	4	114	56	0	3	40	1.15
14374--14425	5	10.4	5	95	0	95	42	19	17	21	1.89
15944--15994	16	3.0	18	75	13	54	56	15	27	0	1.39
16454--16486	15	2.1	16	88	5	50	54	3	42	0	1.15
23679--23739	21	2.9	21	92	0	95	31	22	29	16	1.96
25180--25216	3	12.7	3	88	5	58	37	0	0	62	0.96
25302--25340	14	2.6	15	84	12	53	30	33	28	7	1.85
28513--28583	12	5.9	12	72	6	54	18	14	16	50	1.78
28512--28585	24	3.1	24	84	0	103	20	13	16	50	1.78
29325--29368	21	2.1	21	87	8	63	50	18	29	2	1.59
31389--31417	2	14.5	2	100	0	58	51	0	0	48	1.00
31595--31641	3	15.7	3	100	0	94	68	0	0	31	0.90
31717--31776	23	2.5	24	89	2	86	73	6	6	13	1.24
31717--31783	23	2.8	24	84	4	82	71	5	7	14	1.28
32957--33138	94	1.9	95	84	3	242	42	12	21	23	1.87
33544--33961	81	5.2	81	89	2	626	36	10	19	33	1.86
33912--34011	53	1.9	52	85	6	139	43	6	16	35	1.72
39936--40115	94	1.9	95	82	3	229	40	12	21	25	1.89
40524--41139	81	7.6	81	88	0	813	35	11	20	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43279--43310	15	2.0	17	88	11	50	43	6	0	50	1.27
44305--44366	29	2.2	28	85	2	79	51	1	16	30	1.54
50999--51035	19	1.9	19	88	0	56	40	8	16	35	1.78
55779--55840	27	2.3	26	88	5	88	29	0	56	14	1.39
55779--55854	27	2.8	25	79	18	73	31	0	56	11	1.35
56897--56982	40	2.2	40	87	2	129	33	19	9	37	1.84
67893--67931	18	2.2	18	90	0	60	20	7	2	69	1.26
68101--68140	18	2.2	18	90	0	62	17	5	12	65	1.44
67796--68216	102	3.9	107	84	9	552	39	5	9	44	1.61
68922--68951	3	10.0	3	92	0	51	0	36	0	63	0.95
72233--72270	19	2.0	20	94	5	69	28	5	15	50	1.66

Tables:   1

The End!