genome.fa.s5769.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005769.1 Hibiscus syriacus cultivar Beakdansim tig00013503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57813

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795--825	16	1.9	16	93	0	53	61	0	25	12	1.32
1013--1084	34	2.2	32	85	11	94	5	16	4	73	1.18
1787--1837	19	2.6	20	90	3	77	43	5	15	35	1.71
8705--8809	36	2.9	36	94	1	185	30	36	4	28	1.78
14349--14409	13	5.0	12	74	23	56	31	36	1	31	1.68
14328--14428	36	2.8	36	96	1	186	31	35	2	29	1.73
15629--15688	30	2.0	31	83	3	77	26	8	10	55	1.61
16598--16648	20	2.6	20	90	3	77	35	15	5	43	1.71
17343--17377	18	1.9	18	88	0	52	82	2	11	2	0.88
20625--20675	20	2.6	20	90	3	77	35	15	5	43	1.71
23317--23376	30	2.0	31	83	3	77	26	8	10	55	1.61
24286--24336	20	2.6	20	93	3	86	37	15	5	41	1.72
24739--24789	19	2.7	19	82	14	61	23	13	0	62	1.31
27706--27790	13	7.2	12	72	24	65	29	1	36	32	1.65
27723--27808	13	7.2	12	72	22	58	29	2	37	31	1.70
27705--27808	36	2.9	36	94	1	174	28	1	36	32	1.69
40075--40117	23	1.9	21	81	13	50	32	20	13	32	1.92
41618--41700	36	2.3	36	95	0	148	28	3	36	31	1.75
42039--42089	19	2.6	20	87	3	68	45	5	15	33	1.71
45518--45566	23	2.1	24	81	11	57	63	0	22	14	1.30
45784--45825	19	2.2	20	83	12	52	0	14	7	78	0.95
46191--46286	36	2.7	36	90	0	138	31	3	35	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54012--54041	13	2.4	13	94	5	53	43	0	30	26	1.55
55318--55346	15	2.0	15	93	6	51	0	20	3	75	0.94
56183--56225	23	1.9	21	81	13	50	32	18	13	34	1.90

Tables:   1

The End!