Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000577.1 Hibiscus syriacus cultivar Beakdansim tig00001129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77710

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5592--5703
37
3.0
37
90
0
179
22
20
16
41
1.90
5718--5838
42
2.9
42
81
0
143
34
20
19
24
1.96
14184--14246
2
31.5
2
100
0
126
50
0
0
49
1.00
16543--16574
15
2.1
15
100
0
64
25
6
18
50
1.70
16628--16911
54
5.3
54
82
3
304
32
15
17
33
1.92
17211--17262
26
2.0
26
96
0
95
40
7
13
38
1.73
20243--20378
60
2.2
61
83
6
170
32
16
15
35
1.91
23037--23080
21
2.1
21
100
0
88
52
20
18
9
1.72
26592--27208
139
4.4
139
84
2
641
45
14
12
27
1.82
27975--28055
24
3.4
24
78
0
81
41
18
14
24
1.88
29101--29588
240
2.0
240
97
0
922
31
14
18
35
1.90
31074--31243
45
3.8
45
90
1
261
41
6
21
30
1.78
31074--31243
91
1.9
89
91
2
277
41
6
21
30
1.78
32224--32290
22
3.0
22
100
0
134
26
26
26
19
1.99
32491--32568
30
2.6
29
80
8
84
35
20
8
34
1.84
32582--32653
29
2.5
29
90
0
108
37
12
11
38
1.79
32972--33126
64
2.4
65
84
6
188
20
27
24
28
1.99
33084--33126
21
2.0
21
86
0
59
16
25
27
30
1.97
39162--39228
22
3.0
22
100
0
134
26
26
26
19
1.99
39431--39508
30
2.6
29
80
8
84
35
20
8
34
1.84
39522--39593
29
2.5
29
90
0
108
37
12
11
38
1.79
39897--40048
68
2.2
68
87
2
207
19
28
26
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40028--40070
21
2.0
21
86
0
59
16
25
27
30
1.97
39897--40070
67
2.6
67
84
5
190
18
28
25
27
1.98
42779--42842
21
3.0
21
83
0
83
12
17
50
20
1.78
44872--45069
36
5.7
35
79
15
239
45
4
6
44
1.47
44872--45069
71
2.8
70
84
10
253
45
4
6
44
1.47
45112--45141
2
15.0
2
100
0
60
50
0
0
50
1.00
45569--45608
20
2.1
20
86
9
57
60
27
5
7
1.45
45568--45610
17
2.6
16
82
10
50
60
27
4
6
1.43
46372--46459
13
6.6
14
68
15
53
19
7
0
72
1.08
46379--46482
25
4.2
23
70
21
68
18
7
0
74
1.05
46428--46517
42
2.1
42
80
11
105
17
7
0
74
1.05
46452--46537
41
2.1
41
81
14
99
15
10
0
74
1.07
46558--46595
2
19.5
2
94
5
69
47
0
0
52
1.00
47107--47194
24
3.7
24
80
6
97
43
18
14
23
1.87
49874--49900
13
2.1
13
100
0
54
33
29
22
14
1.94
50243--50586
139
2.5
138
84
6
412
40
12
13
32
1.82
52610--52665
17
3.4
16
70
9
51
73
1
3
21
1.08
52721--52768
18
2.6
18
81
15
62
68
4
6
20
1.28
52803--52848
2
25.0
2
83
16
64
54
0
0
45
0.99
54022--54070
23
2.1
23
88
7
73
57
0
4
38
1.18
56018--56050
17
1.9
17
88
11
50
3
21
0
75
0.93
56021--56059
16
2.4
16
83
12
53
7
15
0
76
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56106--56157
7
7.7
7
91
8
90
0
15
0
84
0.62
56106--56157
13
3.9
13
95
5
95
0
15
0
84
0.62
56106--56157
20
2.6
20
88
11
88
0
15
0
84
0.62
67762--67812
22
2.3
22
100
0
102
31
17
27
23
1.97
72233--72330
49
2.0
49
93
0
169
28
25
22
23
1.99
73237--73307
30
2.2
33
82
7
85
63
7
7
22
1.44
73463--73783
105
3.0
107
81
5
342
46
15
14
23
1.83
73592--73805
110
2.0
109
90
0
338
45
15
15
22
1.84
75265--75294
2
15.0
2
100
0
60
50
0
0
50
1.00
75651--75698
22
2.3
20
75
21
53
45
4
22
27
1.70
75654--75705
23
2.3
23
93
3
88
44
3
25
26
1.71
77003--77059
29
2.0
29
85
0
78
68
1
3
26
1.15

Tables:   1

The End!