genome.fa.s5770.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005770.1 Hibiscus syriacus cultivar Beakdansim tig00013504_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74968

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1481--1521	22	1.9	21	85	14	57	24	4	36	34	1.77
4467--4517	24	2.1	24	85	0	66	33	17	11	37	1.86
5683--5734	23	2.3	22	83	6	68	7	13	15	63	1.51
7181--7227	20	2.3	20	92	0	76	29	10	23	36	1.89
12909--12970	33	2.0	30	82	14	74	17	22	3	56	1.55
17335--17385	24	2.2	23	82	3	57	9	13	15	60	1.58
22302--22331	13	2.4	13	94	5	53	26	30	0	43	1.55
28157--28208	22	2.3	23	90	3	79	30	3	32	32	1.76
28159--28274	36	3.2	37	79	13	134	31	5	33	30	1.80
28177--28284	36	3.0	36	95	0	198	29	5	35	29	1.80
29654--29692	20	2.0	20	90	5	62	30	12	10	46	1.75
30664--30715	21	2.6	21	90	6	81	34	13	5	46	1.67
31070--31114	13	3.5	13	84	3	56	35	35	2	26	1.69
31430--31482	25	2.1	25	82	10	63	77	3	13	5	1.09
31449--31500	16	3.4	17	72	22	60	75	3	13	7	1.17
31436--31505	30	2.3	29	81	13	88	74	4	15	5	1.17
31449--31504	30	1.9	28	92	7	94	75	3	14	7	1.16
35022--35196	90	2.0	89	89	1	269	44	7	10	38	1.67
36711--36755	13	3.5	13	84	3	56	35	35	2	26	1.69
47624--47696	24	2.8	27	82	15	91	58	15	13	12	1.63
51432--51473	22	1.9	22	85	0	57	42	16	0	40	1.48
52385--52435	21	2.5	21	84	6	70	31	11	7	49	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56139--56190	21	2.6	21	90	6	81	32	13	7	46	1.72
61408--61459	21	2.6	21	90	6	81	32	13	7	46	1.72
61871--61909	18	2.0	20	90	9	64	23	10	0	66	1.22
61867--61915	18	2.5	20	78	21	59	24	8	0	67	1.18
64731--64769	18	2.0	20	90	9	64	23	10	0	66	1.22
64727--64775	18	2.5	20	78	21	59	24	8	0	67	1.18
64880--64989	51	2.1	52	83	8	136	29	25	10	34	1.90
65090--65154	19	3.5	18	81	10	69	75	4	16	3	1.10

Tables:   1

The End!