genome.fa.s5771.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005771.1 Hibiscus syriacus cultivar Beakdansim tig00013505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110007

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7147--7201	23	2.4	23	96	0	101	29	29	21	20	1.98
7176--7261	41	2.1	41	88	0	127	33	25	16	24	1.95
23582--23659	31	2.5	31	91	2	122	51	14	11	23	1.74
23879--23936	27	2.1	28	81	9	66	53	1	5	39	1.33
24109--24168	32	1.9	31	83	10	77	35	18	8	38	1.81
30113--30190	23	3.3	23	80	1	84	33	23	19	24	1.97
31190--31504	149	2.1	149	94	1	551	35	20	15	27	1.94
33148--33192	21	2.1	21	84	8	56	17	24	26	31	1.97
36027--36083	28	2.0	28	100	0	114	14	33	10	42	1.79
36503--36817	149	2.1	149	96	0	585	34	21	16	27	1.94
38460--38504	21	2.1	21	84	8	56	15	22	28	33	1.95
39623--39655	15	2.2	15	94	0	57	33	30	18	18	1.94
39767--39835	24	2.8	26	83	12	85	31	24	5	37	1.79
39800--39835	12	3.0	12	91	0	63	36	25	5	33	1.79
40209--40351	64	2.2	64	82	4	182	28	20	18	32	1.96
46532--46600	24	2.8	26	83	12	85	31	24	5	37	1.79
46565--46600	12	3.0	12	91	0	63	36	25	5	33	1.79
46908--47128	64	3.5	63	84	4	248	27	18	20	33	1.96
48894--48944	19	2.7	19	100	0	102	23	25	21	29	1.99
50625--50874	32	7.9	32	89	1	362	28	17	20	33	1.95
52731--52768	20	1.9	20	84	10	51	52	2	13	31	1.54
54262--54299	20	1.9	20	84	10	51	52	2	13	31	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56069--56120	10	4.8	10	73	17	50	9	13	21	55	1.66
56410--56459	24	2.1	24	88	0	73	14	12	14	60	1.60
56423--56468	24	2.0	24	91	8	78	15	8	13	63	1.52
58439--58480	19	2.3	19	87	4	59	35	0	2	61	1.09
58531--58576	18	2.7	16	81	15	56	39	0	6	54	1.26
68372--68424	22	2.4	22	81	9	54	45	1	0	52	1.11
73860--74010	60	2.5	59	81	6	169	32	23	3	39	1.73
74132--74307	60	2.9	60	77	11	157	42	5	19	31	1.75
80383--80419	19	1.9	19	89	10	58	5	24	10	59	1.52
80793--80856	3	21.0	3	81	9	76	59	0	0	40	0.97
80782--80828	25	2.0	24	88	12	71	55	0	0	44	0.99
81204--81661	116	4.0	116	97	0	850	30	19	11	37	1.88
81605--81649	23	1.9	23	82	13	56	15	26	6	51	1.68
82079--82120	22	1.9	22	85	0	57	38	14	11	35	1.83
82085--82139	22	2.5	22	84	0	74	36	14	12	36	1.84
84598--84938	114	3.0	114	94	0	574	31	20	15	33	1.93
90448--90485	14	2.7	14	83	0	58	52	0	15	31	1.43
90602--90654	29	1.9	26	85	11	70	60	9	7	22	1.53
92063--92128	14	4.6	15	75	19	61	71	0	1	27	0.95
92063--92126	3	21.3	3	82	17	64	70	0	1	28	0.97
92063--92128	17	3.9	17	75	24	68	71	0	1	27	0.95
92063--92126	33	1.9	33	84	12	87	70	0	1	28	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93753--93789	19	1.9	19	89	10	58	5	24	10	59	1.52
94173--94239	3	22.0	3	82	8	82	59	0	0	40	0.97
94173--94251	9	8.3	10	77	13	62	62	0	0	37	0.96
100035--100063	10	2.9	10	100	0	58	31	31	17	20	1.96
103027--103124	30	3.4	30	69	13	87	45	2	10	41	1.49
103622--103751	61	2.1	61	81	0	152	29	15	26	28	1.96
105328--105398	26	2.7	27	80	12	76	56	5	4	33	1.42
105378--105444	31	2.1	33	83	5	84	50	2	4	41	1.37
105434--105518	27	3.2	27	85	8	95	54	1	2	42	1.21
107702--107747	17	2.6	18	80	12	51	43	0	2	54	1.12

Tables:   1

The End!