Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005774.1 Hibiscus syriacus cultivar Beakdansim tig00013513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99234

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12759--12928
84
2.0
82
89
2
259
56
11
2
29
1.48
13834--13916
35
2.4
35
80
10
98
31
10
10
46
1.73
15209--15251
6
7.0
6
84
5
59
76
0
6
16
0.99
19158--19326
84
2.0
81
89
3
257
55
11
2
30
1.49
21632--21682
24
2.1
24
100
0
102
29
3
31
35
1.76
26793--26877
42
2.0
42
100
0
170
35
11
27
25
1.91
30180--30206
2
13.5
2
100
0
54
51
0
0
48
1.00
30585--30617
2
16.5
2
100
0
66
51
0
0
48
1.00
30082--30887
416
2.0
404
86
4
1132
33
12
15
38
1.86
31533--32011
55
8.7
55
93
0
796
34
16
12
36
1.86
32443--32489
20
2.2
21
85
7
60
25
27
10
36
1.89
38699--38916
55
4.0
54
89
3
312
35
16
9
37
1.82
40751--40948
44
4.5
44
84
1
261
25
23
12
38
1.89
40746--40948
89
2.3
88
86
0
280
25
23
13
38
1.91
47020--47053
13
2.6
13
90
0
50
47
11
11
29
1.76
47864--47921
29
2.2
25
82
14
64
25
24
6
43
1.79
55334--55368
10
3.5
10
84
0
52
14
0
0
85
0.59
56902--56982
29
2.8
29
75
0
81
34
6
8
50
1.58
59076--59168
39
2.4
39
96
0
168
26
18
24
30
1.98
63685--63760
36
2.1
36
85
7
100
47
1
3
47
1.29
66852--66889
3
12.3
3
94
5
67
63
0
0
36
0.95
67603--67644
22
1.9
22
85
0
57
45
14
11
28
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67817--67904
32
2.8
32
82
8
108
30
22
15
30
1.95
75240--75268
3
9.7
3
100
0
58
65
0
0
34
0.93
77620--77656
17
2.3
16
90
9
58
54
27
0
18
1.44
77984--78021
3
13.0
3
88
5
60
31
0
0
68
0.90
77988--78021
14
2.4
14
85
5
50
32
0
0
67
0.91
77985--78019
17
2.1
17
94
0
61
31
0
0
68
0.90
81536--81642
36
3.0
36
95
0
187
40
19
12
28
1.87
82096--82178
43
1.9
43
90
0
130
31
12
22
33
1.91
82257--82294
13
2.9
13
84
7
51
15
15
10
57
1.64
87761--87859
42
2.4
42
96
0
180
33
16
22
28
1.95
90355--91019
123
5.6
113
85
6
511
40
15
18
25
1.90
90466--91019
123
4.6
122
88
3
757
40
15
18
25
1.89
90356--91019
245
2.8
238
83
7
780
40
15
18
25
1.90
91397--91450
3
18.0
3
92
7
92
33
0
0
66
0.92
93283--93308
4
6.5
4
100
0
52
23
0
0
76
0.78
93444--93472
10
3.0
10
95
5
51
37
0
0
62
0.96
93540--93583
23
2.0
22
82
13
54
56
0
2
40
1.11

Tables:   1

The End!