genome.fa.s5779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005779.1 Hibiscus syriacus cultivar Beakdansim tig00013533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  318131

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3192--3230	20	1.9	21	89	5	62	15	17	0	66	1.25
3487--3534	13	3.7	12	79	17	51	75	2	18	4	1.07
7715--7765	19	2.7	19	84	6	68	17	17	0	64	1.29
12222--12259	19	2.0	20	89	5	60	15	18	0	65	1.27
16036--16073	16	2.4	16	82	8	51	23	18	15	42	1.89
17099--17146	13	3.6	13	80	5	60	77	2	18	2	0.97
26046--26149	36	2.9	36	89	1	138	31	34	4	28	1.78
33140--33190	19	2.6	20	90	3	77	43	5	15	35	1.71
37339--37389	19	2.6	20	90	3	77	43	5	15	35	1.71
39128--39171	13	3.5	13	76	17	56	11	25	0	63	1.27
39122--39171	25	2.0	25	100	0	100	12	24	0	64	1.27
39112--39152	19	2.2	19	100	0	82	9	26	0	63	1.25
59911--59969	23	2.5	24	80	5	75	66	8	15	10	1.45
69118--69175	23	2.4	24	88	5	82	8	17	12	62	1.54
72602--72630	14	2.0	15	93	6	51	75	0	24	0	0.80
75222--75307	13	7.2	12	72	22	58	29	3	37	30	1.74
75204--75308	36	2.9	36	94	1	176	29	4	36	29	1.78
82971--83000	14	2.1	14	93	0	51	6	16	0	76	0.99
85821--85868	19	2.6	19	86	3	53	31	14	6	47	1.69
86377--86687	155	2.0	155	99	0	615	22	19	8	49	1.75
88398--88482	11	7.2	11	72	22	66	31	36	3	28	1.74
88395--88499	36	2.9	36	94	1	176	29	36	4	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95736--95764	14	2.1	14	93	6	51	6	17	0	75	1.01
99183--99224	19	2.4	17	80	11	57	61	14	14	9	1.55
101970--101999	13	2.4	13	94	5	53	43	0	30	26	1.55
106546--106574	14	2.1	14	93	6	51	6	17	0	75	1.01
110251--110302	17	2.9	17	77	11	50	76	9	11	1	1.09
110325--110371	14	3.1	15	75	12	51	72	4	19	4	1.18
110512--110541	14	2.1	14	93	0	51	6	16	0	76	0.99
115835--115919	11	7.2	11	72	22	66	31	36	3	28	1.74
115832--115936	36	2.9	36	94	1	176	29	36	4	29	1.78
120400--120429	13	2.4	13	94	5	53	26	30	0	43	1.55
122959--123000	19	2.4	17	80	11	57	9	14	14	61	1.55
126070--126112	22	2.0	22	90	9	70	13	11	4	69	1.33
128349--128391	22	2.0	22	90	9	70	13	11	4	69	1.33
133493--133537	23	1.9	24	90	4	74	22	13	0	64	1.28
135410--135498	11	7.6	11	72	22	67	31	38	3	26	1.73
135407--135501	36	2.7	36	95	1	165	30	36	4	28	1.76
158517--158541	13	1.9	13	100	0	50	72	12	16	0	1.13
164959--165001	23	1.9	21	81	13	50	32	18	13	34	1.90
167193--167235	23	1.9	21	81	13	50	32	18	13	34	1.90
172036--172070	17	2.0	18	88	5	54	31	11	11	45	1.76
177985--178039	24	2.3	25	81	12	62	32	14	21	30	1.93
180865--180889	13	1.9	13	100	0	50	80	4	16	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182562--182612	26	2.0	26	100	0	102	23	11	0	64	1.26
182563--182619	26	2.2	26	93	0	96	22	12	1	63	1.38
185146--185232	33	2.5	34	81	7	104	33	4	36	25	1.76
188575--188624	2	25.0	2	100	0	100	50	0	0	50	1.00
191521--191584	26	2.5	26	83	14	80	7	17	4	70	1.29
191537--191593	17	3.5	15	79	13	60	3	17	5	73	1.16
204496--204625	58	2.2	58	93	1	215	25	16	30	27	1.96
208441--208505	25	2.5	26	92	2	105	18	32	20	29	1.96
211027--211093	25	2.6	26	83	2	82	20	32	17	28	1.96
212524--212575	19	2.6	21	90	6	81	46	5	13	34	1.67
216289--216352	27	2.4	26	77	12	67	3	17	3	76	1.04
217059--217110	19	2.6	21	84	6	72	46	5	11	36	1.64
220161--220225	27	2.4	28	80	12	80	61	10	16	10	1.56
226253--226281	15	2.0	15	93	6	51	0	20	3	75	0.94
228171--228275	35	2.9	36	83	7	142	26	34	3	35	1.75
229891--229948	13	4.7	13	75	12	59	29	41	0	29	1.56
229890--230043	35	4.3	35	86	5	200	27	36	1	33	1.68
229890--230039	73	2.0	74	87	1	212	28	36	2	34	1.69
230552--230585	17	2.1	16	88	5	50	67	0	17	14	1.23
232366--232521	69	2.3	69	97	0	294	23	20	19	37	1.95
235023--235059	11	3.4	11	100	0	74	75	8	16	0	1.02
235015--235059	22	2.2	21	88	11	67	77	8	13	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239291--239337	10	4.5	11	91	5	71	72	12	14	0	1.13
239293--239329	10	3.7	10	100	0	74	75	8	16	0	1.02
243319--243366	12	4.2	12	81	5	55	75	10	12	2	1.14
243310--243345	10	3.8	10	92	7	58	77	11	11	0	0.99
243319--243366	23	2.1	22	84	3	60	75	10	12	2	1.14
255006--255035	12	2.4	13	94	5	53	83	3	13	0	0.77
254998--255046	11	4.5	11	82	2	64	83	6	10	0	0.80
261553--261578	13	2.0	13	100	0	52	30	30	0	38	1.58
267827--267878	22	2.4	22	83	3	70	78	3	13	3	1.02
272027--272078	20	2.5	20	87	9	68	71	5	7	15	1.29
275980--276004	13	1.9	13	100	0	50	40	0	32	28	1.57
291462--291501	18	2.2	18	90	0	62	0	7	12	80	0.91
291488--291517	11	2.7	11	100	0	60	0	0	10	90	0.47
291469--291515	10	4.8	10	82	12	53	0	4	8	87	0.67
294598--294709	36	3.2	36	85	2	138	28	4	33	33	1.77
298980--299048	33	2.1	33	83	5	86	31	1	36	30	1.67
299034--299130	13	8.0	12	72	22	62	28	3	37	30	1.73
299019--299131	36	3.2	36	92	1	174	27	3	36	32	1.74
302672--302701	13	2.4	13	94	5	53	26	30	0	43	1.55
305055--305093	14	2.8	14	100	0	78	74	5	15	5	1.17
305038--305063	9	2.9	9	100	0	52	80	0	19	0	0.71
308473--308502	13	2.4	13	94	5	53	26	30	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315006--315049	18	2.4	18	100	0	88	18	13	36	31	1.90

Tables:   1

The End!