genome.fa.s5781.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005781.1 Hibiscus syriacus cultivar Beakdansim tig00013540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116125

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38--72	18	1.9	18	88	0	52	42	0	0	57	0.99
349--389	16	2.5	17	80	15	50	48	2	0	48	1.14
2297--2561	20	13.9	20	76	10	241	33	21	18	26	1.97
2305--2522	54	3.9	54	84	4	247	33	23	17	24	1.96
2600--2657	20	2.9	20	76	5	64	13	17	24	44	1.85
2756--2817	14	4.3	14	77	6	61	46	14	0	38	1.45
4233--4323	42	2.2	42	80	4	103	23	16	38	21	1.93
4822--4897	20	3.8	20	94	0	125	36	25	18	19	1.94
4940--5005	20	3.3	20	89	0	96	18	19	24	37	1.93
5539--5587	18	2.7	18	96	0	89	12	12	44	30	1.78
6922--7028	20	5.4	20	83	3	110	45	23	15	14	1.84
7609--7707	20	4.9	20	89	0	144	26	21	26	26	1.99
7620--7722	20	5.2	20	90	0	134	26	22	25	26	2.00
28418--28451	14	2.4	14	90	0	50	41	17	11	29	1.85
30818--30859	21	2.0	21	81	9	50	47	14	9	28	1.75
31207--31259	18	2.9	18	72	11	54	43	5	0	50	1.25
33415--33444	12	2.5	12	100	0	60	16	23	36	23	1.94
34885--34951	28	2.4	27	78	11	73	53	26	1	17	1.53
39134--39210	38	2.0	38	84	0	100	37	10	2	49	1.51
39397--39526	65	2.0	63	81	8	147	54	0	6	38	1.31
53445--53480	2	18.0	2	100	0	72	50	0	0	50	1.00
54289--54439	60	2.5	59	86	2	203	32	16	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54555--54696	60	2.4	60	81	1	151	38	12	14	35	1.84
55050--55125	39	1.9	40	84	7	102	40	5	5	48	1.48
58718--58857	71	2.0	71	84	0	181	35	18	15	31	1.92
59448--59486	18	2.2	18	85	0	51	64	2	0	33	1.08
66754--66798	3	15.0	3	100	0	90	66	0	0	33	0.92
66794--66984	53	3.5	54	75	9	172	43	7	7	40	1.61
76725--76768	5	8.2	5	85	9	52	18	4	2	75	1.09
76727--76768	11	3.8	11	78	9	50	16	4	2	76	1.07
79874--79963	23	3.9	22	73	15	65	76	6	14	2	1.08
81805--82336	106	5.0	106	91	1	829	33	25	18	22	1.97
81805--82336	209	2.5	209	91	1	832	33	25	18	22	1.97
83853--83894	5	8.2	5	84	10	50	16	4	2	76	1.07
85834--85879	19	2.2	22	85	11	62	39	2	2	56	1.24
87876--87937	31	2.2	28	78	16	65	32	29	20	17	1.96
88738--88865	59	2.2	59	81	5	143	34	20	17	28	1.95
90071--90119	24	2.0	24	96	0	89	24	12	34	28	1.91
90911--90964	2	27.0	2	100	0	108	50	0	0	50	1.00
92126--92169	20	2.4	19	85	14	58	43	11	22	22	1.85
93409--93458	23	2.2	23	82	7	57	48	0	12	40	1.40
97446--97502	29	2.0	29	92	0	96	43	8	8	38	1.67
98330--98406	29	2.7	29	89	0	109	44	6	11	37	1.67
98356--98421	29	2.2	29	86	2	87	46	3	12	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97355--99156	905	2.0	888	94	2	3158	37	9	20	32	1.85
99240--99283	19	2.2	20	96	4	81	22	27	29	20	1.99
99784--99838	22	2.5	22	78	0	56	32	20	21	25	1.97
101714--101957	51	4.8	51	83	4	314	24	11	15	48	1.77
101714--101957	100	2.4	102	83	4	305	24	11	15	48	1.77
101960--102014	18	2.7	21	72	21	53	40	12	18	29	1.87
102448--102491	20	2.2	20	87	0	61	59	13	15	11	1.62
102448--102500	21	2.6	21	84	3	63	56	16	15	11	1.67
102537--102564	12	2.3	12	100	0	56	17	17	17	46	1.85
109351--109416	29	2.3	27	82	10	69	46	0	9	43	1.35
113771--113826	28	2.0	28	100	0	112	25	14	10	50	1.75

Tables:   1

The End!