genome.fa.s5782.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005782.1 Hibiscus syriacus cultivar Beakdansim tig00013542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54899

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4821--4850	13	2.4	13	94	5	53	43	0	30	26	1.55
6155--6183	15	2.0	15	93	6	51	0	20	3	75	0.94
7040--7082	23	1.9	21	81	13	50	32	18	13	34	1.90
11978--12003	5	5.2	5	100	0	52	80	0	19	0	0.71
13870--13938	27	2.6	27	97	0	129	26	26	18	28	1.98
14525--14665	36	3.9	36	92	0	230	29	37	4	28	1.78
15113--15146	14	2.3	15	90	5	52	73	2	20	2	1.09
20280--20383	23	4.4	24	68	25	78	29	35	4	29	1.78
20277--20417	36	3.9	36	92	0	230	30	35	4	29	1.77
27200--27239	8	5.0	8	84	9	55	2	20	0	77	0.88
27200--27257	16	3.8	15	77	8	55	3	18	1	75	1.03
28036--29061	509	2.0	510	99	0	2009	23	19	25	32	1.97
36621--36649	15	2.0	15	93	6	51	0	20	3	75	0.94
36642--36694	24	2.2	24	86	0	79	7	15	18	58	1.60
37708--37759	21	2.6	21	87	6	72	30	15	7	46	1.74
38165--38206	4	10.0	4	80	19	50	23	4	0	71	1.05
38179--38217	18	2.0	20	90	9	64	23	10	0	66	1.22
38175--38223	18	2.5	20	78	21	59	24	8	0	67	1.18
41479--41558	35	2.2	37	88	4	119	32	36	2	28	1.71
41509--41557	11	4.2	12	75	19	50	32	36	2	28	1.69
45959--46038	35	2.2	37	84	8	112	35	33	1	30	1.66
47875--47926	21	2.6	21	90	6	81	32	13	7	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48338--48376	18	2.0	20	90	9	64	23	10	0	66	1.22
48334--48382	18	2.5	20	78	21	59	24	8	0	67	1.18
49116--49165	19	2.6	19	87	0	64	36	14	6	44	1.69
49682--49748	33	2.1	33	81	13	77	19	23	0	56	1.42
52888--52925	20	1.9	20	100	0	76	65	0	26	7	1.19
53082--53184	35	2.9	36	90	5	167	28	4	36	30	1.78

Tables:   1

The End!